Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 205,487 (bp)   Positions: 432
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
MWF/Hsd (2019) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
Morc1
T
C
C
C
A
G
T
G
A
G
T
C
T
-
C
C
A
A
A
T
3
A
T
T
C
G
C
A
G
G
T
-
G
T
T
-
-
A
G
C
6
C
G
G
G
T
-
G
-
-
T
T
G
A
G
A
C
C
T
C
-
G
-
A
A
C
2
G
G
T
A
T
A
A
-
C
A
C
C
T
C
C
C
A
C
T
T
G
G
G
T
A
A
T
G
C
G
G
A
A
T
A
G
T
-
-
6
A
G
A
T
C
A
T
T
C
A
A
T
A
T
T
T
C
G
G
T
T
-
T
G
C
G
A
A
A
C
G
-
A
T
C
A
T
C
A
G
A
C
C
A
G
T
G
C
A
A
A
-
A
G
A
C
G
G
C
T
G
G
A
T
T
A
C
T
G
3
T
T
T
C
G
C
A
-
G
A
T
-
T
-
T
T
T
2
16
C
C
A
A
C
C
C
C
G
C
A
-
G
G
T
A
T
T
A
G
T
G
G
A
G
G
G
A
T
C
G
G
G
T
G
A
T
T
C
2
-
G
T
C
T
C
-
C
A
T
C
C
T
G
T
G
A
G
A
T
A
A
T
G
T
G
C
-
A
T
A
A
C
C
G
-
A
-
C
A
C
-
A
A
G
T
-
T
A
A
A
G
G
T
T
-
3
G
A
C
T
A
G
A
A
G
G
G
A
G
G
C
A
C
C
C
A
T
A
C
T
T
A
T
G
A
G
C
-
-
-
-
-
-
A
G
G
A
3
A
A
A
C
T
G
C
C
A
A
C
A
G
T
A
T
-
T
A
15
T
G
T
A
A
A
G
T
12
G
G
8
T
T
5
C
G
C
G
C
-
T
-
-
T
A
G
T
C
T
A
G
G
G
G
A
-
C
A
C
C
G
-
A
C
-
C
-
T
-
A
G
3
-
G
G
-
-
A
G
C
G
C
A
A
G
A
T
G
G
-
T
T
9
A
G
-
  52,179,328
  52,179,453
  52,179,747
  52,179,751
  52,179,882
  52,179,984
  52,180,098
  52,180,249
  52,180,422
  52,180,435
  52,180,447
  52,180,655
  52,180,697
  52,180,701
  52,180,737
  52,181,162
  52,182,700
  52,183,093
  52,184,920
  52,186,268
  52,186,713
  52,186,769
  52,187,223
  52,187,382
  52,188,282
  52,188,322
  52,188,540
  52,189,068
  52,190,520
  52,191,002
  52,191,569
  52,191,803
  52,192,946
  52,194,862
  52,195,157
  52,195,606
  52,198,231
  52,198,491
  52,199,611
  52,200,232
  52,201,275
  52,201,528
  52,202,863
  52,202,864
  52,202,873
  52,203,253
  52,203,451
  52,203,817
  52,203,860
  52,203,861
  52,203,997
  52,205,876
  52,206,265
  52,206,283
  52,207,252
  52,208,777
  52,208,786
  52,208,873
  52,209,217
  52,209,569
  52,210,088
  52,210,564
  52,210,772
  52,210,791
  52,210,792
  52,210,814
  52,210,848
  52,211,429
  52,213,283
  52,213,587
  52,213,780
  52,213,887
  52,214,416
  52,215,572
  52,216,071
  52,216,075
  52,216,320
  52,216,336
  52,216,372
  52,216,526
  52,217,012
  52,217,238
  52,217,310
  52,217,312
  52,217,475
  52,217,477
  52,217,581
  52,217,672
  52,217,734
  52,217,777
  52,217,927
  52,218,126
  52,218,788
  52,219,318
  52,221,780
  52,221,864
  52,221,996
  52,222,058
  52,222,481
  52,223,295
  52,224,293
  52,226,527
  52,227,011
  52,227,068
  52,227,395
  52,227,398
  52,228,328
  52,228,457
  52,228,964
  52,231,818
  52,232,642
  52,234,568
  52,234,645
  52,235,414
  52,235,630
  52,235,668
  52,235,906
  52,236,087
  52,236,720
  52,236,745
  52,237,140
  52,237,146
  52,237,499
  52,237,526
  52,237,557
  52,237,597
  52,237,685
  52,238,721
  52,239,167
  52,239,387
  52,239,411
  52,239,439
  52,239,443
  52,239,605
  52,241,094
  52,242,800
  52,242,815
  52,242,920
  52,244,029
  52,244,141
  52,244,239
  52,245,116
  52,247,130
  52,247,682
  52,249,842
  52,250,327
  52,250,411
  52,250,467
  52,251,576
  52,252,574
  52,252,878
  52,252,993
  52,255,217
  52,256,158
  52,256,520
  52,257,149
  52,257,475
  52,258,136
  52,258,474
  52,258,919
  52,259,525
  52,260,354
  52,261,894
  52,262,024
  52,262,497
  52,263,083
  52,263,593
  52,264,392
  52,266,098
  52,266,125
  52,267,071
  52,267,126
  52,268,537
  52,268,737
  52,269,365
  52,270,667
  52,271,665
  52,271,731
  52,271,734
  52,272,470
  52,272,776
  52,272,880
  52,273,084
  52,273,851
  52,274,072
  52,274,187
  52,274,433
  52,275,168
  52,276,144
  52,276,190
  52,276,527
  52,277,742
  52,277,804
  52,277,951
  52,279,778
  52,279,822
  52,280,157
  52,282,032
  52,282,143
  52,282,145
  52,282,619
  52,282,653
  52,282,699
  52,282,910
  52,282,934
  52,282,978
  52,283,040
  52,283,475
  52,283,510
  52,283,626
  52,283,670
  52,283,687
  52,283,787
  52,283,800
  52,283,802
  52,287,491
  52,287,506
  52,287,523
  52,287,526
  52,287,599
  52,287,615
  52,287,667
  52,287,674
  52,287,730
  52,287,733
  52,287,875
  52,287,897
  52,287,903
  52,287,927
  52,288,054
  52,288,120
  52,288,252
  52,288,298
  52,288,300
  52,288,306
  52,288,340
  52,288,343
  52,288,347
  52,288,434
  52,288,472
  52,288,483
  52,288,526
  52,288,528
  52,288,529
  52,288,622
  52,288,639
  52,288,659
  52,288,725
  52,288,746
  52,288,802
  52,288,983
  52,288,988
  52,289,389
  52,289,465
  52,289,559
  52,289,736
  52,289,801
  52,289,903
  52,289,981
  52,290,137
  52,290,269
  52,290,297
  52,290,530
  52,290,657
  52,290,683
  52,290,686
  52,290,709
  52,290,725
  52,290,750
  52,290,757
  52,290,763
  52,290,792
  52,290,809
  52,290,858
  52,290,923
  52,291,039
  52,291,146
  52,291,154
  52,291,302
  52,291,305
  52,291,373
  52,291,631
  52,291,746
  52,291,878
  52,292,571
  52,292,740
  52,293,087
  52,293,096
  52,293,240
  52,293,353
  52,293,405
  52,293,407
  52,293,408
  52,293,560
  52,293,581
  52,293,616
  52,293,634
  52,293,644
  52,293,914
  52,293,959
  52,294,084
  52,294,176
  52,294,213
  52,294,346
  52,296,530
  52,296,591
  52,296,757
  52,296,760
  52,297,115
  52,297,615
  52,297,671
  52,297,884
  52,297,905
  52,298,009
  52,298,037
  52,298,100
  52,298,279
  52,298,291
  52,298,628
  52,298,878
  52,298,879
  52,299,922
  52,300,007
  52,300,129
  52,300,352
  52,301,080
  52,301,085
  52,301,088
  52,301,119
  52,301,157
  52,301,561
  52,302,247
  52,302,613
  52,302,836
  52,303,318
  52,303,337
  52,303,347
  52,303,391
  52,303,928
  52,304,041
  52,304,051
  52,304,180
  52,304,392
  52,304,461
  52,304,468
  52,304,492
  52,304,623
  52,304,624
  52,304,740
  52,304,805
  52,312,186
  52,312,205
  52,312,232
  52,312,267
  52,312,370
  52,312,404
  52,312,455
  52,312,456
  52,312,526
  52,312,645
  52,312,856
  52,312,974
  52,312,980
  52,313,047
  52,313,075
  52,313,090
  52,313,248
  52,313,332
  52,313,419
  52,313,421
  52,313,471
  52,314,432
  52,315,350
  52,315,750
  52,315,902
  52,316,534
  52,319,425
  52,324,040
  52,324,802
  52,325,851
  52,326,408
  52,327,465
  52,332,978
  52,333,592
  52,333,619
  52,333,719
  52,334,650
  52,335,051
  52,335,214
  52,339,702
  52,340,572
  52,340,714
  52,340,715
  52,341,271
  52,344,194
  52,348,912
  52,349,346
  52,351,813
  52,352,249
  52,353,093
  52,353,785
  52,354,670
  52,355,577
  52,356,108
  52,356,177
  52,356,332
  52,356,541
  52,356,543
  52,356,625
  52,357,009
  52,357,695
  52,361,300
  52,361,874
  52,363,251
  52,364,240
  52,364,328
  52,364,389
  52,364,646
  52,364,647
  52,364,710
  52,364,947
  52,365,043
  52,365,369
  52,366,818
  52,367,028
  52,373,415
  52,375,162
  52,375,791
  52,375,987
  52,378,097
  52,378,205
  52,382,429
G
T
A
T
G
A
C
A
C
A
C
A
A
A
A
A
G
G
G
C
-
G
C
G
T
A
G
G
A
A
C
T
A
C
A
2
2
G
T
T
-
T
G/-
G/T
T
A
T
A
T
T
-
C
A
G
C
G
T
T
A
A
2
C
4
T
C
T
-
T
T
C
T
C
-
T
T
T
G
T
T
G
-
G
A
-
T
A
C
A
C
A
A
G
G
C
C
T
A
C
T
C
C
T
A
C
2
-/2
-
C
T
C
C
T
-
C
G
T
G
T
C
G
A
C
C
T
A
T
C
-
T
G
A
G
T
G
C
T
T
A
G
C
C
T
T
-
G
G
C
G
T
T
G
A
G
A
T
T
G
T
3
G
T
G
T
C
A
T
C
A
A
G
C
C
G
T
C
A
-
A
A
G
A
-
T
G
5
A
G
C
C
C
-/T
G
C
A
-
-
T
T
C
G
A
T
A
A
A
G
G
17
A
C
C
G
C
G
C
A
C
A
A
G
C
C
A
T
C
T
A
A
T
C
T
G
C
G
T
-
2
T
C
T
C
T
T
T
T
C
T
G
C
A
G
A
C
T
G
C
T
G
C
A
C
C
T
A
G
C
G
G
T
T
A
5
G
8
G
G
T
T
G
G
T
C
T
A
G
T
G
T
A
A
A
2
-
T
T
T
G
G
A
C
G
C
T
A
G
C
A
T
G
G
C/T
T
-
C
G
A
T/C
T/G
-
C
A
G
T
T
4
-/9
-/22
-/65
2
2
G
A
T
G
-
G
G
G
T
C
C
T
T
C
G
-
C
C
C
-
C
8
G
G
-
C
A
A
T
G
G
A
C
-
T
A
-
C
A
-
T
T
G
A
A
2
G
-/6
4
C
G
A
C
T
C
G
A
T
A
A
A/G
C
A
T
C/G
T
C
A
G
A
4
T
A
C
A
G
-
-
C
A
T
C
A
C
A
-
A
T
G
T
C
C
C
C
T
C
C
G
-
G
A
T