Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 45,757 (bp)   Positions: 263
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
BXH2/CubMcwi (2020) 
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
Mocos
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
T
-
T
T
2
C
A
C
G
C
2
T
T
G
G
C
C
T
G
A
T
T
G
A
C
G
G
C
A
T
A
A
A
T
T
T
-
G
C
C
C
T
2
G
A
C
T
T
A
T
A
G
G
C
C
T
A
A
T
G
G
G
G
G
G
G
4
T
A
T
C
A
T
5
G
G
G
C
C
G
T
T
C
A
A
G
G
C
A
G
G
G
G
C
C
G
C
A
-
C
A
G
C
G
T
T
T
3
C
C
A
A
A
T
G
G
T
G
2
T
A
A
G
-
A
A
A
T
A
C
T
C
T
T
T
G
G
T
T
T
A
C
A
A
A
C
T
A
-
-
C
A
G
A
A
T
A
C
G
C
G
T
3
A
G
C
A
C
T
T
A
T
4
T
T
A
C
T
C
A
C
7
A
A
A
T
A
G
C
G
-
2
4
20
T
G
C
A
T
A
A
T
G
A
G
C
C
A
A
T
-
G
G
11
C
C
A
G
G
T
A
-
T
G
-
A
G
G
-
G
C
C
T
T
-
G
A
T
G
T
C
T
A
C
A
C
C
T
A
-
C
-
C
G
T
C
C
-
A
A
T
C
  15,931,850
  15,931,951
  15,932,447
  15,932,737
  15,932,911
  15,932,999
  15,933,089
  15,933,273
  15,933,348
  15,933,395
  15,933,520
  15,933,617
  15,933,709
  15,934,179
  15,934,245
  15,934,303
  15,934,475
  15,934,545
  15,934,549
  15,934,582
  15,934,597
  15,934,618
  15,934,627
  15,934,683
  15,934,743
  15,934,803
  15,934,824
  15,934,866
  15,934,871
  15,934,901
  15,934,919
  15,935,095
  15,935,106
  15,935,157
  15,935,214
  15,935,309
  15,935,882
  15,935,928
  15,936,151
  15,936,160
  15,936,286
  15,936,317
  15,936,836
  15,936,857
  15,936,875
  15,937,074
  15,937,078
  15,937,089
  15,937,136
  15,937,151
  15,937,168
  15,937,181
  15,937,182
  15,937,275
  15,937,441
  15,937,444
  15,937,527
  15,937,767
  15,937,836
  15,937,859
  15,937,923
  15,938,059
  15,938,061
  15,938,063
  15,938,065
  15,938,067
  15,938,105
  15,938,108
  15,938,130
  15,938,204
  15,938,236
  15,938,400
  15,938,437
  15,938,467
  15,938,642
  15,938,722
  15,938,730
  15,938,857
  15,938,863
  15,938,886
  15,938,896
  15,938,989
  15,938,995
  15,939,007
  15,939,163
  15,939,312
  15,939,320
  15,939,434
  15,939,480
  15,939,520
  15,939,527
  15,939,548
  15,939,558
  15,939,595
  15,939,744
  15,939,836
  15,939,951
  15,940,195
  15,940,196
  15,940,285
  15,940,345
  15,940,346
  15,940,355
  15,940,501
  15,940,576
  15,940,581
  15,940,616
  15,940,630
  15,940,724
  15,940,767
  15,940,828
  15,940,884
  15,940,918
  15,940,924
  15,940,925
  15,940,926
  15,940,939
  15,940,944
  15,940,962
  15,940,976
  15,940,981
  15,941,008
  15,941,018
  15,941,019
  15,941,042
  15,941,149
  15,941,156
  15,941,181
  15,941,477
  15,941,638
  15,941,695
  15,941,802
  15,941,971
  15,942,131
  15,942,153
  15,942,277
  15,942,294
  15,942,295
  15,942,316
  15,942,349
  15,943,017
  15,943,195
  15,943,249
  15,943,250
  15,943,280
  15,943,332
  15,943,427
  15,943,428
  15,943,952
  15,944,172
  15,944,582
  15,944,770
  15,945,365
  15,945,409
  15,945,797
  15,945,883
  15,946,337
  15,946,718
  15,946,832
  15,946,843
  15,946,881
  15,946,928
  15,947,044
  15,947,382
  15,947,539
  15,947,615
  15,947,798
  15,947,855
  15,947,964
  15,948,227
  15,948,243
  15,948,306
  15,948,384
  15,948,405
  15,948,423
  15,948,448
  15,948,486
  15,948,684
  15,948,867
  15,948,887
  15,948,981
  15,948,992
  15,949,031
  15,949,048
  15,949,090
  15,949,293
  15,949,295
  15,949,395
  15,949,442
  15,949,520
  15,949,556
  15,949,588
  15,949,624
  15,949,643
  15,949,651
  15,949,668
  15,949,738
  15,950,196
  15,950,283
  15,950,303
  15,950,350
  15,950,389
  15,950,682
  15,950,724
  15,950,802
  15,950,824
  15,950,829
  15,951,284
  15,951,410
  15,951,618
  15,951,787
  15,953,106
  15,953,194
  15,953,415
  15,953,625
  15,953,633
  15,953,815
  15,953,911
  15,954,955
  15,956,066
  15,956,485
  15,956,642
  15,956,870
  15,957,383
  15,957,538
  15,957,656
  15,957,735
  15,958,316
  15,958,513
  15,958,607
  15,959,048
  15,959,314
  15,960,326
  15,960,466
  15,960,638
  15,960,773
  15,961,194
  15,961,689
  15,963,189
  15,963,568
  15,963,617
  15,963,665
  15,963,916
  15,964,394
  15,964,517
  15,964,854
  15,965,235
  15,966,245
  15,966,248
  15,966,275
  15,970,917
  15,971,323
  15,974,926
  15,976,674
  15,976,783
  15,977,107
  15,977,140
  15,977,146
  15,977,154
  15,977,184
  15,977,219
  15,977,236
  15,977,277
T/G
T/A
-/T
A/G
T/C
2/-
C/G
A/T
C/A
G/A
C/T
2/-
T/C
T/C
G/T
G/A
C/T
C/T
T/-
G/A
A/T
T/C
T/C
G/A
A/G
C/G
G/T
G/C
C/G
A/G
T/C
A/G
A/G
A/C
T/G
T/C
T/C
-/T
G/A
C/T
C/T
C/T
T/G
2/-
G/A
A/-
C/G
T/C
T/G
T/C
T/A
A/C
G/A
G/A
C/T
C/T
T/-
A/G
A/G
T/C
G/-
C/-
G/C
G/C
G/C
G/C
C/-
4/-
T/A
A/G
T/C
C/T
A/G
T/C
5/-
G/A
G/A
G/A
C/G
C/T
G/T
T/C
T/C
C/T
A/C
A/T
G/A
G/A
C/T
A/G
G/A
G/A
G/A
G/C
C/T
C/T
G/T
C/T
A/G
-/20
C/T
A/G
G/A
C/A
G/A
T/C
T/C
T/C
3/-
C/T
C/G
A/G
A/G
A/C
T/C
G/T
G/A
T/C
G/A
2/-
T/C
A/G
A/C
G/T
-/22
A/G
A/G
A/G
T/C
A/T
C/T
T/G
C/A
T/C
T/C
T/A
G/A
G/A
T/G
T/C
T/G
A/G
C/T
A/G
A/G
A/G
C/G
T/C
G/-
-/2
-/G
C/T
A/G
G/C
A/G
A/C
T/G
A/G
C/A
G/T
C/T
G/A
T/C
3/-
A/C
G/A
C/T
A/G
C/T
T/C
T/C
A/C
T/G
4/-
T/C
T/A
A/C
C/A
T/C
C/T
A/T
C/T
7/-
A/G
A/G
A/G
T/G
A/C
G/T
C/T
G/A
-/16
2/-
4/-
20/-
C/-
G/A
C/T
A/G
T/C
A/G
A/T
T/C
G/T
A/G
G/A
C/T
C/T
A/G
A/G
T/C
-/C
A/-
G/A
11/-
T/-
C/T
A/T
G/A
G/C
T/C
A/T
-/8
T/C
G/T
-/C
A/G
G/T
G/A
-/C
G/A
C/T
C/T
T/C
T/C
-/G
G/A
A/C
T/C
G/T
T/G
C/T
T/C
A/G
C/T
A/G
C/T
C/T
T/C
A/G
-/3
C/T
-/T
-/G
G/A
T/C
C/T
C/T
-/3
A/C
A/C
T/C
C/T