Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 374,532 (bp)   Positions: 567
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
PVG/Seac (2019) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
Mid1
G
G
A
T
-
G
A
A
C
A
G
G
C
G
A
T
A
A
A
T
C
G
C
C
A
C
T
G
G
A
T
C
C
7
G
G
A
G
A
T
G
C
T
A
C
G
-
G
G
A
A
G
T
A
G
C
A
T
2
-
G
G
C
2
-
G
T
A
T
C
A
21
A
C
A
G
A
C
T
25
C
G
-
G
T
C
G
C
-
A
T
A
C
A
G
9
A
C
-
A
A
G
T
C
C
T
G
T
G
C
G
A
G
6
G
G
C
T
T
A
T
G
2
T
T
G
G
A
C
A
T
T
T
-
T
T
G
G
T
A
C
G
G
C
C
A
A
T
A
T
G
G
T
T
C
T
T
-
-
-
G
T
A
C
C
G
A
T
G
T
T
T
T
-
A
G
C
C
-
T
C
A
T
T
G
T
A
A
-
C
18
A
-
T
G
T
T
T
T
C
C
C
A
C
T
T
3
T
A
-
T
T
A
C
G
A
A
C
T
C
G
C
G
G
T
T
G
A
A
C
C
G
C
A
C
C
G
G
C
C
-
A
T
T
T
T
A
C
G
C
A
A
-
T
C
C
-
C
T
C
C
T
G
G
C
G
C
T
C
A
C
T
T
2
A
G
C
G
C
G
G
4
A
A
T
A
T
T
8
G
T
T
A
A
C
-
A
G
A
T
A
C
-
C
T
T
T
2
T
T
A
-
3
A
C
T
3
G
A
A
A
C
T
A
T
G
A
T
A
-
T
-
T
C
A
-
T
2
-
-
A
A
C
T
A
G
T
A
A
8
T
G
A
G
C
-
T
A
C
A
C
G
C
G
A
T
A
C
C
C
G
A
C
C
T
G
16
C
G
G
C
A
T
3
C
C
A
T
-
T
A
A
2
A
C
G
T
C
T
G
C
T
-
A
C
G
T
C
G
T
C
A
G
T
-
C
A
A
C
T
G
G
T
C
T
T
T
G
C
G
G
G
C
T
T
A
T
G
A
T
C
C
A
T
T
A
G
G
A
G
A
A
C
2
C
T
C
T
T
A
T
A
A
G
C
C
T
G
4
T
C
T
G
A
G
G
A
G
G
C
A
C
A
C
G
C
A
A
C
T
A
T
T
A
C
A
A
2
C
A
T
C
C
C
-
G
T
G
4
T
A
T
A
G
T
G
A
A
A
T
G
T
G
A
-
C
T
T
-
G
A
T
T
A
6
A
T
-
G
T
A
A
C
A
G
T
T
T
6
C
A
A
A
A
C
A
C
G
C
A
A
C
2
C
T
T
T
  24,129,712
  24,135,243
  24,138,448
  24,139,174
  24,139,351
  24,139,374
  24,139,521
  24,139,590
  24,139,645
  24,141,493
  24,142,572
  24,142,574
  24,143,625
  24,144,105
  24,144,761
  24,145,204
  24,145,287
  24,145,310
  24,145,435
  24,145,510
  24,145,642
  24,146,033
  24,146,570
  24,147,017
  24,147,150
  24,147,968
  24,148,103
  24,149,265
  24,149,902
  24,150,861
  24,151,488
  24,151,878
  24,152,965
  24,155,189
  24,155,386
  24,157,381
  24,157,649
  24,159,009
  24,159,248
  24,159,344
  24,161,263
  24,162,028
  24,162,066
  24,162,075
  24,162,223
  24,164,022
  24,164,027
  24,164,415
  24,166,330
  24,168,822
  24,170,633
  24,170,658
  24,171,522
  24,172,357
  24,172,810
  24,175,812
  24,179,979
  24,182,735
  24,182,846
  24,182,853
  24,183,300
  24,183,601
  24,184,375
  24,185,446
  24,185,458
  24,187,585
  24,190,357
  24,191,211
  24,192,783
  24,192,990
  24,194,468
  24,194,470
  24,194,491
  24,195,305
  24,196,738
  24,196,994
  24,200,240
  24,200,744
  24,204,033
  24,208,178
  24,210,491
  24,210,884
  24,211,029
  24,211,139
  24,211,419
  24,211,725
  24,216,993
  24,218,659
  24,220,325
  24,226,352
  24,229,688
  24,230,816
  24,233,584
  24,236,518
  24,241,731
  24,242,158
  24,243,069
  24,243,532
  24,244,357
  24,244,358
  24,246,047
  24,246,996
  24,247,513
  24,248,504
  24,249,088
  24,252,206
  24,253,582
  24,254,665
  24,255,448
  24,255,834
  24,256,046
  24,256,051
  24,256,081
  24,256,617
  24,256,716
  24,256,740
  24,256,913
  24,257,381
  24,257,764
  24,258,440
  24,259,073
  24,260,610
  24,261,057
  24,261,143
  24,261,203
  24,261,788
  24,262,848
  24,262,960
  24,263,084
  24,263,262
  24,263,412
  24,263,514
  24,264,515
  24,264,757
  24,265,031
  24,265,049
  24,265,218
  24,265,618
  24,267,422
  24,267,649
  24,267,658
  24,268,251
  24,268,502
  24,268,651
  24,268,698
  24,269,239
  24,269,775
  24,270,362
  24,270,862
  24,270,986
  24,271,532
  24,271,582
  24,271,801
  24,272,466
  24,273,057
  24,273,802
  24,274,060
  24,274,069
  24,274,071
  24,274,072
  24,275,130
  24,276,450
  24,276,458
  24,278,502
  24,278,855
  24,278,904
  24,279,560
  24,279,615
  24,280,085
  24,280,305
  24,280,398
  24,280,989
  24,281,711
  24,282,529
  24,283,039
  24,285,458
  24,285,653
  24,285,708
  24,285,903
  24,286,162
  24,287,713
  24,288,693
  24,289,335
  24,289,900
  24,290,733
  24,292,461
  24,292,792
  24,293,863
  24,293,880
  24,294,194
  24,294,288
  24,295,307
  24,297,038
  24,297,119
  24,297,356
  24,297,636
  24,298,152
  24,298,869
  24,300,558
  24,300,573
  24,301,049
  24,301,137
  24,302,594
  24,306,041
  24,307,145
  24,307,420
  24,307,868
  24,308,218
  24,308,350
  24,308,955
  24,310,399
  24,311,104
  24,311,996
  24,313,042
  24,313,521
  24,314,346
  24,314,348
  24,314,432
  24,315,106
  24,315,897
  24,315,904
  24,316,336
  24,316,741
  24,316,794
  24,316,829
  24,317,100
  24,317,548
  24,317,878
  24,317,894
  24,317,988
  24,318,044
  24,318,389
  24,318,832
  24,318,874
  24,319,478
  24,320,193
  24,320,363
  24,320,762
  24,320,777
  24,321,076
  24,321,248
  24,321,352
  24,321,488
  24,321,561
  24,321,976
  24,322,077
  24,322,078
  24,322,087
  24,322,108
  24,324,289
  24,324,500
  24,324,974
  24,326,546
  24,327,040
  24,329,226
  24,331,038
  24,331,336
  24,332,009
  24,333,729
  24,334,015
  24,335,060
  24,335,637
  24,337,142
  24,339,264
  24,342,711
  24,342,724
  24,342,885
  24,342,945
  24,343,077
  24,343,813
  24,345,697
  24,346,835
  24,347,255
  24,347,327
  24,347,648
  24,348,054
  24,351,115
  24,351,134
  24,352,200
  24,352,349
  24,352,388
  24,353,431
  24,354,515
  24,354,725
  24,355,497
  24,355,527
  24,355,549
  24,355,572
  24,356,645
  24,356,671
  24,356,706
  24,356,708
  24,357,637
  24,357,741
  24,358,206
  24,358,490
  24,358,632
  24,358,715
  24,358,722
  24,360,131
  24,360,782
  24,361,422
  24,361,995
  24,362,444
  24,362,487
  24,362,520
  24,363,253
  24,364,508
  24,364,520
  24,365,533
  24,365,534
  24,366,402
  24,366,901
  24,366,988
  24,367,101
  24,367,407
  24,367,409
  24,373,563
  24,373,754
  24,374,673
  24,382,407
  24,382,663
  24,385,049
  24,388,176
  24,394,981
  24,394,983
  24,396,504
  24,396,606
  24,396,654
  24,397,063
  24,397,215
  24,397,623
  24,397,734
  24,397,787
  24,397,886
  24,398,672
  24,398,850
  24,398,881
  24,398,960
  24,398,969
  24,399,300
  24,399,836
  24,400,081
  24,400,091
  24,400,371
  24,400,900
  24,401,538
  24,401,548
  24,401,605
  24,401,639
  24,401,645
  24,401,736
  24,402,362
  24,403,195
  24,403,598
  24,403,612
  24,403,870
  24,403,958
  24,403,974
  24,404,190
  24,404,567
  24,404,706
  24,405,357
  24,406,243
  24,406,389
  24,406,487
  24,406,586
  24,406,857
  24,407,090
  24,407,823
  24,408,010
  24,408,502
  24,409,599
  24,409,635
  24,409,636
  24,410,598
  24,412,378
  24,412,667
  24,412,908
  24,413,625
  24,414,644
  24,414,654
  24,414,736
  24,415,266
  24,415,267
  24,415,268
  24,415,567
  24,416,072
  24,416,117
  24,416,883
  24,417,172
  24,417,179
  24,417,327
  24,417,376
  24,418,070
  24,420,358
  24,420,364
  24,420,993
  24,421,013
  24,421,222
  24,421,403
  24,422,523
  24,423,105
  24,423,674
  24,424,290
  24,424,322
  24,424,832
  24,425,176
  24,425,218
  24,425,485
  24,426,503
  24,427,257
  24,427,323
  24,428,317
  24,429,575
  24,430,242
  24,430,341
  24,431,267
  24,431,664
  24,431,953
  24,432,563
  24,432,736
  24,432,823
  24,432,911
  24,433,105
  24,433,490
  24,433,796
  24,433,801
  24,433,923
  24,434,111
  24,434,569
  24,434,932
  24,435,397
  24,435,849
  24,435,850
  24,436,446
  24,436,525
  24,438,632
  24,438,774
  24,439,172
  24,439,257
  24,439,858
  24,439,867
  24,440,601
  24,441,597
  24,441,905
  24,442,224
  24,442,298
  24,442,684
  24,442,768
  24,442,771
  24,442,774
  24,442,789
  24,442,793
  24,442,960
  24,443,072
  24,443,141
  24,443,264
  24,443,276
  24,443,444
  24,443,494
  24,443,820
  24,443,992
  24,444,033
  24,444,141
  24,444,150
  24,444,187
  24,444,321
  24,444,388
  24,445,581
  24,445,789
  24,445,928
  24,453,172
  24,453,396
  24,453,436
  24,453,474
  24,454,533
  24,454,555
  24,454,717
  24,454,739
  24,455,081
  24,455,102
  24,455,334
  24,455,410
  24,455,609
  24,455,751
  24,455,865
  24,455,953
  24,456,561
  24,457,718
  24,457,736
  24,458,068
  24,458,128
  24,458,150
  24,458,164
  24,458,972
  24,459,045
  24,459,135
  24,459,441
  24,459,576
  24,459,625
  24,459,751
  24,460,335
  24,460,381
  24,460,852
  24,461,215
  24,461,817
  24,462,568
  24,463,275
  24,463,340
  24,463,793
  24,464,053
  24,464,089
  24,464,249
  24,464,453
  24,464,670
  24,465,014
  24,465,582
  24,465,782
  24,465,800
  24,466,001
  24,466,390
  24,466,887
  24,468,024
  24,468,130
  24,468,139
  24,468,471
  24,468,992
  24,469,267
  24,470,186
  24,470,646
  24,470,734
  24,472,069
  24,472,625
  24,472,695
  24,472,752
  24,472,913
  24,473,330
  24,473,655
  24,474,533
  24,474,701
  24,475,180
  24,475,885
  24,475,920
  24,477,145
  24,477,687
  24,477,832
  24,478,091
  24,479,617
  24,481,367
  24,482,215
  24,482,305
  24,484,114
  24,484,440
  24,485,436
  24,485,896
  24,486,327
  24,486,531
  24,486,818
  24,487,073
  24,487,420
  24,487,658
  24,488,087
  24,489,396
  24,489,402
  24,489,734
  24,490,548
T
A
G
C
A
C
G
G
T
G
C
A
T
C
G
C
G
G
G
A
T
A
A
T
C
T
C
A
A
C
A
T
A/-
-
A
A
G
T
G
-
T
T
C
-
T
G/-
-/C
A
A
C
-/T
-/C
G
G
A
A
G
-
-
T
A
A
G
-
8
A
C
G
C
T
G
-
G
G
T
A
T
T
A
25/-
T
-
A
C
A
T
A
G
2
C
G
G
A
G
A
-
G
A
T
T
G
A
-
T
T
A
A
C
A
T
C
C
A
-
A
T
T
C
C
G/-
A
-
-
-
G
C
A
G
T
T
A
C
G
T
C
C
A
C
G
C
T
T
C
T
T
G
G
-
G
G
A
A
G
C
T
C
C
-/3
-/12
-/16
A
-
C
T
T
A
G
A
A
C
C
C
-/A
T
T
A
A
T
T
C
T
-
C
C
T
C
T
G
T
T
-
-
C
T/G
T
-
C
C
G
G
G
G
G
G
A
A
-
C
T
A
A
G
T
T
A
-/T
T/-
A
-
T
A
T
A
C
A/C
A
A
G
G
A
T
A
G
G
T
G
A
T
T
G
A
G
C
C
G
G
T
G
A
T
-
G
T
G
T
G
C
T
C
T
G
-/C
A
A
T
T
T
G
T
C
A
C
G
2/-
G
A
T
A
T
T
C
-
G
G
C
G
C
G
-
A
G
C
G
-
G
14
G
T
T
C
G
-
T
A
G
G
C
-
A
G
G
A
-
-
T
-
-
-
-
T
T
T
A
G
-/G
T/-
G
C
G
C
C
T
C
T
G
8
C
-
54
2
C
G
A
A
G
C
C
G
G
-
C/-
A
G
T
A
T
C
-
T
G
G
A
G
A
T
-
G
A
A
T
A
-
A
G
A
A
-
T
A
A
T/-
C/T
C
3/-
A/-
A/-
-
-
2
C
G
G
-
G
T
T
C
T
-
A
T
C
4
G
A
A
A
T
A
C
A
G
T
G
A
T
G
C
T
C
T
A
-
T
C
C
C
A
G
A
A
A
A/-
G
G
C
G
A
G
C
C/G
T
G
A
G
G
T
C
C
T
C
C
-
-
G
C
G
G
G
T
C
T
G
A
G
G
A
T
-
C
T
G
C
C
A
C
T
A
A
A
-
A
T
T
C
G
G
G
T
C
T
C
C
C
T
G
C
-
T
G
C
G
T
T
2
A
C
A
-
C
T
C
G
A
C
A
G
C
G
G
T/-
A
A
G
3
T
G
-
4
C
C
C
C
-
-
C
C
T
A
C
-
-
T
C
T
C
C
C
-
T
G
G
G
G
G
G
G
A
A
C
C
T
-
-
A
-
A