Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 263,509 (bp)   Positions: 462
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
GK/FarMcwi (2019) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
Ghr
A
-
A
G
2
C
G
T
T
G
T
A
C
G
G
T
A
C
G
C
-
A
C
C
C
T
-
C
C
T
A
C
A
A
C
C
T
C
C
T
C
C
T
G
14
T
T
T
-
A
C
G
A
T
A
A
C
T
C
G
G
-
T
A
G
A
A
C
-
C
A
G
C
C
G
A
C
33
A
G
C
G
A
A
-
G
T
G
T
G
-
A
T
C
C
G
C
G
T
11
C
A
T
C
T
A
-
C
A
T
T
-
T
T
A
G
C
T
A
-
A
G
T
A
5
G
A
G
A
A
C
A
T
A
T
A
A
T
-
G
T
C
G
T
C
C
G
C
G
A
C
G
T
3
A
A
G
A
G
A
A
A
T
A
A
A
T
C
A
T
C
C
T
T
A
G
G
C
C
T
C
A
-
A
A
A
C
-
-
G
-
A
G
T
T
C
G
A
C
T
C
G
T
T
3
A
A
T
A
G
G
G
T
A
T
-
G
C
A
T
G
T
T
G
C
C
C
A
A
T
C
-
T
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
C
G
-
C
T
G
C
G
T
C
G
C
G
A
-
-
T
G
C
C
T
A
-
C
A
G
-
-
A
A
A
A
G
A
C
-
T
A
G
G
C
A
A
C
C
T
C
C
C
A
A
T
A
A
G
-
T
A
G
-
A
C
C
C
9
G
G
G
T
C
C
T
C
A
3
-
T
T
C
A
A
C
G
C
A
C
C
C
G
A
2
C
A
A
G
-
A
-
C
A
C
4
A
A
C
T
G
G
C
T
C
T
T
A
G
C
G
A
T
5
A
G
A
A
A
A
-
C
A
A
T
A
C
G
2
T
C
C
T
A
G
T
T
A
T
T
G
-
C
G
T
2
A
C
G
A
A
A
2
C
G
A
A
A
T
C
C
G
3
2
A
-
T
A
C
-
C
T
C
T
C
G
G
G
C
A
C
T
G
T
G
C
-
A
A
G
A
A
A
T
-
A
C
G
A
C
C
C
T
G
A
G
G
T
  52,541,483
  52,542,687
  52,544,475
  52,544,516
  52,544,524
  52,544,525
  52,544,579
  52,545,223
  52,545,410
  52,554,736
  52,556,012
  52,556,282
  52,556,399
  52,556,635
  52,556,636
  52,556,802
  52,556,998
  52,557,004
  52,557,183
  52,558,683
  52,558,809
  52,559,006
  52,559,471
  52,559,489
  52,559,543
  52,559,699
  52,560,465
  52,560,865
  52,560,963
  52,567,281
  52,567,360
  52,567,477
  52,568,055
  52,570,156
  52,572,297
  52,572,299
  52,572,332
  52,573,271
  52,573,606
  52,574,113
  52,574,386
  52,574,474
  52,575,281
  52,576,093
  52,576,738
  52,577,226
  52,578,984
  52,579,927
  52,579,990
  52,580,892
  52,581,205
  52,581,605
  52,581,731
  52,585,487
  52,586,663
  52,586,695
  52,586,969
  52,587,077
  52,587,169
  52,587,376
  52,587,427
  52,587,768
  52,589,774
  52,593,017
  52,593,184
  52,593,193
  52,593,194
  52,593,257
  52,593,362
  52,594,436
  52,599,982
  52,600,169
  52,600,539
  52,600,701
  52,601,004
  52,601,731
  52,601,818
  52,602,624
  52,602,667
  52,603,297
  52,603,321
  52,603,369
  52,603,653
  52,603,912
  52,604,064
  52,604,416
  52,604,431
  52,604,432
  52,605,134
  52,606,173
  52,606,620
  52,606,776
  52,606,874
  52,607,186
  52,607,487
  52,607,609
  52,608,598
  52,608,936
  52,609,078
  52,609,445
  52,609,457
  52,609,477
  52,609,901
  52,609,909
  52,610,132
  52,610,332
  52,610,711
  52,610,883
  52,611,003
  52,611,123
  52,611,279
  52,611,469
  52,611,484
  52,611,711
  52,611,833
  52,611,884
  52,611,962
  52,612,075
  52,612,145
  52,612,323
  52,612,477
  52,612,525
  52,612,684
  52,612,708
  52,613,317
  52,613,322
  52,613,358
  52,613,378
  52,613,447
  52,613,473
  52,620,294
  52,620,714
  52,620,759
  52,620,812
  52,620,825
  52,621,190
  52,621,336
  52,621,503
  52,621,574
  52,621,679
  52,621,721
  52,621,765
  52,621,993
  52,622,133
  52,622,239
  52,622,732
  52,622,745
  52,623,307
  52,624,031
  52,624,217
  52,624,586
  52,624,637
  52,624,646
  52,624,740
  52,624,758
  52,624,770
  52,624,777
  52,624,786
  52,624,789
  52,624,793
  52,624,795
  52,624,798
  52,624,853
  52,625,177
  52,625,241
  52,625,255
  52,625,349
  52,625,416
  52,625,460
  52,625,525
  52,625,837
  52,626,074
  52,626,250
  52,626,587
  52,627,180
  52,627,274
  52,627,302
  52,627,318
  52,627,357
  52,628,223
  52,628,453
  52,628,493
  52,628,654
  52,628,719
  52,629,633
  52,630,736
  52,631,044
  52,631,060
  52,631,061
  52,631,105
  52,631,311
  52,631,668
  52,631,854
  52,632,303
  52,632,411
  52,632,554
  52,632,959
  52,633,532
  52,633,837
  52,633,872
  52,634,157
  52,634,276
  52,634,677
  52,634,795
  52,635,038
  52,635,087
  52,635,193
  52,635,730
  52,636,445
  52,636,505
  52,636,974
  52,636,975
  52,637,855
  52,637,874
  52,638,365
  52,638,626
  52,639,097
  52,639,231
  52,639,443
  52,639,465
  52,640,228
  52,640,518
  52,641,132
  52,657,196
  52,660,541
  52,678,982
  52,687,028
  52,687,651
  52,692,331
  52,692,440
  52,692,840
  52,692,889
  52,693,007
  52,693,114
  52,693,116
  52,693,118
  52,693,120
  52,693,122
  52,693,124
  52,693,126
  52,693,128
  52,693,130
  52,693,132
  52,693,134
  52,693,136
  52,693,410
  52,694,204
  52,694,234
  52,694,237
  52,694,842
  52,695,563
  52,695,708
  52,695,765
  52,695,866
  52,696,084
  52,696,127
  52,696,328
  52,697,089
  52,697,243
  52,697,356
  52,697,385
  52,697,512
  52,697,931
  52,698,057
  52,698,211
  52,698,659
  52,699,021
  52,699,420
  52,699,640
  52,700,213
  52,700,907
  52,701,016
  52,701,092
  52,701,533
  52,701,762
  52,701,816
  52,701,893
  52,718,384
  52,728,015
  52,740,873
  52,742,808
  52,742,860
  52,742,953
  52,743,254
  52,743,736
  52,744,348
  52,744,349
  52,744,623
  52,746,086
  52,746,281
  52,746,318
  52,746,335
  52,746,359
  52,746,575
  52,746,835
  52,747,559
  52,747,618
  52,747,641
  52,747,716
  52,748,164
  52,748,711
  52,748,999
  52,749,025
  52,751,174
  52,751,175
  52,751,180
  52,751,249
  52,751,375
  52,751,614
  52,751,811
  52,751,964
  52,751,979
  52,752,090
  52,752,135
  52,752,170
  52,752,213
  52,752,248
  52,752,283
  52,752,287
  52,752,291
  52,752,337
  52,752,448
  52,752,545
  52,752,808
  52,753,126
  52,753,129
  52,753,321
  52,753,809
  52,753,984
  52,754,233
  52,754,864
  52,755,559
  52,755,661
  52,756,132
  52,756,164
  52,756,165
  52,756,753
  52,756,871
  52,758,090
  52,758,187
  52,758,434
  52,758,518
  52,758,646
  52,758,770
  52,759,193
  52,759,357
  52,759,941
  52,759,979
  52,760,037
  52,760,137
  52,760,193
  52,760,442
  52,760,493
  52,760,566
  52,760,696
  52,761,474
  52,761,741
  52,762,095
  52,762,946
  52,762,966
  52,762,971
  52,763,000
  52,763,065
  52,763,079
  52,763,088
  52,764,045
  52,764,061
  52,764,312
  52,764,469
  52,765,084
  52,765,109
  52,765,249
  52,765,256
  52,765,367
  52,765,563
  52,765,951
  52,766,824
  52,766,838
  52,767,151
  52,767,303
  52,767,353
  52,767,374
  52,767,376
  52,767,868
  52,768,309
  52,768,650
  52,768,862
  52,769,059
  52,769,373
  52,769,664
  52,769,890
  52,769,902
  52,770,748
  52,770,776
  52,770,778
  52,772,068
  52,773,213
  52,774,195
  52,775,583
  52,780,336
  52,780,427
  52,781,901
  52,782,173
  52,783,264
  52,783,483
  52,783,649
  52,783,702
  52,783,780
  52,783,782
  52,784,483
  52,786,229
  52,786,343
  52,786,789
  52,787,568
  52,788,204
  52,789,936
  52,790,094
  52,790,129
  52,790,132
  52,790,388
  52,790,443
  52,790,893
  52,791,017
  52,791,077
  52,791,159
  52,791,519
  52,791,610
  52,791,885
  52,792,029
  52,792,087
  52,792,276
  52,792,902
  52,793,072
  52,793,113
  52,793,139
  52,793,232
  52,793,427
  52,793,655
  52,794,212
  52,794,392
  52,794,931
  52,794,995
  52,795,776
  52,796,024
  52,796,046
  52,796,054
  52,796,086
  52,796,305
  52,796,339
  52,797,082
  52,797,549
  52,800,657
  52,800,660
  52,801,513
  52,801,514
  52,801,516
  52,802,581
  52,802,847
  52,803,567
  52,803,568
  52,804,258
  52,804,883
G
A
G
-
-
A/-
A
C
C
A
A
T
T
C
T
C
C
T
A
A
T
-
T
A
A
-/A
3
G
T
C
C
T
G
G
T
T
G
T
T
C
T
A
C
A
-
A
A
G
G
C
T
C
C
C
G
G
T
C
T
A
A
C
C
G/-
A
G
G
T
2
G
C
A
A
T
A
G
T
-
G
A
T
A
-
T
30
A
C
A
-
C
2
G
C
T
T
A
T
A
C
-
T
-
C
T
C
-
A
T
C
C
C
T
C
G
C
A
T
C
G
C
G
C
C
G
-
T
T
T
C
C
-
G
C
C
C
C
G
G
C
C
C
T
T
C
T
T
A
G
A
G
T
A
C
-
T/-
-/T
?
T/-
A/-
C/-
-/C
T/-
A
G
G
G
C
G
C
C
T
G
G
G
G
C
A
A
G
C
T
G
T
G
T
G
T
T
18
A
3
G
A
C
A
T
A
T
T
C
G
T
-
G
-
G
G
C
C
A
A
A
C
G/-
C
4
C
T
G
C
C
C
C
T
T
G
A
-
G
G
A
T
A
-/T
-/T
T/-
-/T
-/T
T/-
-/T
T/-
T/-
T/-
-/T
-/T
T
G
C
T
A
A
T
G
A
G
A
A
A
A
T
A
G
T
T
C
A
T
G
G
G
T
G
G
A
C
4
G
A/-
-
G
C
T
T
T
C
C
T
T
T
G
G
-
T
G
T
A
G
T
T
A
G
G
A
T
A
T
A
T
G
T
T
A
-
A
T
T
C
T/-
T
C
A
T
-
T
G/-
G
A
-
G
A
A
T
G
T
T
G
-
G
-
T
C
C
A
T
G
T
T
T
G
-
G
C
G
C
T
T
A
G
A
T/C
T/C
G
C/T
G
A
G
C
-
C
-
T
G
-
G
T
-
T
G
A
T
T
-
-
C
T
T
C
G
A
A
C
G
C
A
A
2
A
A
A
-
C
G
A
C
G
-/G
-
G
C
T
G
G
C
A
T
A
-
-
-
2
G
G
T
A
G
G
G
C
T
A
C
G/A
T
T
T
-
A
C
C
T
T
G
C
C/-
C
-/G
G/-
C
8
G
A
A
C
-/T
T/-
T
-
A
T
C
A/-
A