Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 182,549 (bp)   Positions: 346
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
F344/N (2020) 
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
Bckdhb
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
T
C
C
C
T
A
A
-
G
T
A
A
C
T
-
-
C
C
T
G
T
C
T
T
-
T
G
C
G
A
C
C
G
G
C
T
T
G
A
G
A
T
A
G
C
A
G
G
G
G
G
A
G
G
3
A
G
T
G
G
A
T
-
T
A
C
A
T
10
C
T
C
A
T
A
A
T
-
C
C
A
G
A
T
A
C
C
C
T
A
T
T
A
C
T
A
T
A
G
T
C
T
A
T
3
C
T
-
C
A
T
A
G
G
T
A
A
A
A
-
T
G
T
C
A
C
A
A
A
A
G
A
C
A
T
A
T
C
A
C
6
A
G
A
A
A
C
A
T
C
T
C
T
-
A
G
C
A
G
3
-
T
A
T
C
T
T
C
C
-
T
C
G
G
A
G
C
A
G
G
G
2
T
C
T
A
G
T
G
A
C
T
C
T
G
A
C
T
T
A
A
G
A
T
A
T
A
A
T
A
C
T
T
T
A
A
-
T
T
-
G
G
A
G
T
A
G
G
G
4
A
G
A
G
A
G
A
T
G
T
A
G
C
T
T
C
C
G
A
C
G
G
A
G
A
A
G
C
C
G
C
G
4
A
G
G
-
-
T
G
A
-
T
T
C
T
G
T
T
G
10
A
A
G
C
T
A
A
A
G
A
A
-
C
G
C
A
G
T
G
C
T
G
G
T
C
C
G
C
A
A
G
A
C
G
T
T
T
C
A
T
C
C
C
G
C
G
C
G
G
G
C
T
C
G
-
T
G
G
G
C
C
G
T
A
  84,845,410
  84,845,809
  84,845,814
  84,846,023
  84,846,074
  84,846,162
  84,846,663
  84,846,923
  84,847,048
  84,847,746
  84,847,849
  84,848,109
  84,848,223
  84,848,274
  84,848,299
  84,848,348
  84,848,373
  84,848,453
  84,848,548
  84,848,783
  84,848,793
  84,849,105
  84,849,509
  84,850,160
  84,850,278
  84,850,296
  84,850,344
  84,850,396
  84,850,523
  84,850,587
  84,850,726
  84,850,749
  84,851,317
  84,852,073
  84,852,400
  84,852,713
  84,853,012
  84,853,070
  84,853,159
  84,853,395
  84,854,002
  84,854,101
  84,854,416
  84,854,738
  84,855,288
  84,855,498
  84,855,977
  84,856,366
  84,856,515
  84,856,822
  84,856,930
  84,856,970
  84,857,352
  84,858,263
  84,858,485
  84,858,498
  84,858,857
  84,858,903
  84,859,151
  84,859,975
  84,859,980
  84,860,116
  84,860,475
  84,860,548
  84,860,679
  84,860,854
  84,861,298
  84,861,781
  84,862,101
  84,864,226
  84,864,248
  84,864,648
  84,866,511
  84,867,532
  84,868,033
  84,868,097
  84,868,283
  84,868,304
  84,870,091
  84,870,339
  84,870,705
  84,870,706
  84,870,788
  84,870,866
  84,871,641
  84,906,237
  84,927,889
  84,927,913
  84,927,964
  84,936,421
  84,936,433
  84,936,494
  84,936,875
  84,936,906
  84,937,435
  84,937,705
  84,937,739
  84,937,858
  84,938,075
  84,938,394
  84,938,816
  84,939,050
  84,939,122
  84,939,422
  84,939,509
  84,939,640
  84,939,690
  84,939,749
  84,940,117
  84,943,414
  84,943,538
  84,943,620
  84,943,742
  84,944,250
  84,944,332
  84,944,787
  84,944,905
  84,945,252
  84,945,434
  84,945,485
  84,945,566
  84,945,826
  84,945,849
  84,945,967
  84,945,968
  84,946,532
  84,946,753
  84,946,788
  84,947,022
  84,947,033
  84,947,155
  84,947,362
  84,947,487
  84,947,813
  84,947,943
  84,948,751
  84,948,858
  84,948,874
  84,949,010
  84,949,151
  84,949,310
  84,949,370
  84,949,375
  84,949,457
  84,949,537
  84,949,538
  84,949,541
  84,949,562
  84,949,611
  84,949,739
  84,949,800
  84,949,844
  84,949,845
  84,950,082
  84,950,690
  84,951,181
  84,951,410
  84,955,234
  84,955,236
  84,955,564
  84,955,691
  84,955,695
  84,955,899
  84,955,958
  84,956,961
  84,957,390
  84,957,524
  84,957,624
  84,957,859
  84,960,018
  84,960,206
  84,960,312
  84,960,315
  84,960,400
  84,960,714
  84,961,423
  84,963,197
  84,963,877
  84,964,249
  84,964,891
  84,965,025
  84,965,054
  84,965,354
  84,965,521
  84,965,646
  84,965,834
  84,965,869
  84,966,513
  84,966,546
  84,966,575
  84,967,021
  84,967,025
  84,967,495
  84,967,625
  84,968,317
  84,968,318
  84,968,913
  84,969,009
  84,969,150
  84,969,197
  84,969,365
  84,969,556
  84,969,775
  84,969,782
  84,970,406
  84,970,552
  84,970,634
  84,970,645
  84,971,554
  84,978,966
  84,981,180
  84,982,281
  84,985,701
  84,985,755
  84,985,966
  84,986,449
  84,986,618
  84,986,691
  84,990,789
  84,990,840
  84,990,844
  84,991,566
  84,991,574
  84,991,620
  84,991,626
  84,994,380
  84,996,374
  84,996,600
  84,997,900
  84,998,444
  84,999,061
  85,000,689
  85,000,868
  85,001,338
  85,004,084
  85,004,404
  85,005,007
  85,006,619
  85,006,725
  85,007,243
  85,007,260
  85,007,278
  85,007,406
  85,008,141
  85,008,765
  85,008,790
  85,008,814
  85,009,578
  85,009,960
  85,010,084
  85,010,854
  85,011,140
  85,011,635
  85,012,404
  85,013,107
  85,013,319
  85,013,823
  85,013,920
  85,013,947
  85,014,028
  85,014,193
  85,014,194
  85,014,305
  85,014,510
  85,015,161
  85,015,473
  85,015,612
  85,015,614
  85,015,616
  85,015,617
  85,015,709
  85,015,880
  85,016,101
  85,016,150
  85,016,348
  85,016,673
  85,016,839
  85,016,963
  85,017,699
  85,017,817
  85,018,344
  85,018,413
  85,018,469
  85,018,516
  85,018,756
  85,018,883
  85,019,005
  85,019,065
  85,019,166
  85,019,170
  85,019,240
  85,019,402
  85,019,788
  85,019,858
  85,019,881
  85,019,948
  85,020,355
  85,020,410
  85,020,607
  85,020,608
  85,020,711
  85,020,797
  85,021,092
  85,021,320
  85,021,394
  85,021,465
  85,021,497
  85,021,567
  85,021,627
  85,021,636
  85,021,647
  85,021,844
  85,021,946
  85,022,012
  85,022,038
  85,022,086
  85,022,262
  85,022,395
  85,022,589
  85,022,620
  85,022,697
  85,022,730
  85,022,761
  85,023,580
  85,023,603
  85,023,613
  85,023,669
  85,023,739
  85,023,774
  85,024,689
  85,024,817
  85,025,055
  85,025,177
  85,025,213
  85,025,497
  85,026,538
  85,026,591
  85,026,639
  85,026,927
  85,027,097
  85,027,240
  85,027,287
  85,027,658
  85,027,679
  85,027,699
  85,027,716
G
C
T
T
T
C
G
T
A
A
G
T
G
T
A
A
A
T
T
A
-
C
T
C
C
2
A
A
G
C
G
T
T
A
T
T
C
C
A
G
T
G
G
G
C
-
G
A
A
A
A/-
A
G
A
A
-
G
-
C
A
A
G
C
22
C
G
T
G
C
-
T
C
T
G
C
T
G
C
T
T
T
G
-
G
-
-/T
-/T
-/T
G
G
G
C
C
G
T
A
C
-
G
A
C
A
A
G
C
-
A
C
G/G
T
G
C
G
A
A
C
G
G
G
C
3
C
A
C
A
G
A
G
T
G
G
A
G
T
G
C
G
C
G
G
T
6/-
G/-
A
T
T
G
T
-
G
T
A
A
G
4
T
A
T
G
T
-
2
C
G
A
-
C
-
T
T
6
C
T
A
A
G
A
T
C
A
A
A
-
C
T
C
G
A
A
A
-
-/T
C
T
C
A
G
T
C
A
G
G
A
G
C
T
C
C
G
C
C
A
C
C
-
G
G
A
C
C
4
G/-
G/A
A/T
G/A
C
G
T
T
A
-
-
A
G
A
T
A
C
G
A
C
T
T
T
A
A
A
T
A
-/T
T
A
T
T
C
G
G
A
G
T
-
T
A
-
G
A
A
A
7
A
A
G
6
C
C
A
C
A
C
C
A
-
G
G
A
T
-
-
G
G
A
G
C
T
A
A
T
-
T
C
A
T
C
A
A
C
T
T
A
G
G
-
A
G
T
T
C
-
C
T
G
C
A
T/-
G/T
A
T
A
T
A
A
A
G
A
T
T/-
T
C
A
A
A
T
T
A
C
G