Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly mRatBN7.2
   

Chromosome Start Position Stop Position
Region Size: 248,602 (bp)   Positions: 346
Genes ( + ) 
Genes ( - ) 
mRatBN7.2  
BXH3/CubMcwi (2020) 
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
Adcy8
G
C
C
A
A
-
2
A
T
4
C
C
G
C
T
-
A
T
A
G
G
A
C
T
A
A
G
T
G
G
T
G
G
T
T
G
C
A
G
C
A
T
C
C
A
T
G
C
C
G
T
T
-
C
A
C
24
A
G
A
T
G
T
-
T
A
C
T
C
A
C
A
A
A
A
G
T
10
G
G
G
G
A
G
C
T
G
C
T
-
-
G
A
A
T
C
C
T
-
T
T
G
T
-
T
G
A
T
A
A
-
-
T
G
A
G
A
C
C
T
G
-
A
4
A
A
G
C
A
G
T
C
A
T
A
T
A
G
A
T
C
A
T
T
T
A
T
A
T
A
A
C
T
T
A
A
A
A
A
C
A
-
T
T
C
G
T
T
T
A
T
13
T
A
T
-
G
G
A
A
C
G
G
G
C
G
C
A
T
A
G
T
A
G
C
-
C
A
G
T
C
T
A
6
G
T
A
G
C
C
C
C
G
A
G
T
C
T
G
G
A
G
C
T
2
T
G
C
C
C
G
G
A
C
T
C
C
G
G
C
A
A
A
G
A
G
T
C
G
T
A
A
T
T
10
-
-
A
A
A
G
T
4
C
A
T
T
A
C
G
C
A
A
C
A
G
C
C
T
-
-
A
-
T
G
C
-
A
G
A
C
T
G
G
T
-
G
A
G
C
T
C
C
C
A
C
A
C
A
A
C
C
T
T
G
C
A
G
G
T
C
-
T
G
C
-
G
A
T
-
C
G
C
T
A
A
C
A
C
4
C
T
C
A
G
G
  96,418,012
  96,418,974
  96,419,365
  96,419,476
  96,419,477
  96,420,265
  96,421,348
  96,421,879
  96,423,237
  96,423,265
  96,424,661
  96,424,971
  96,425,029
  96,425,178
  96,426,277
  96,426,314
  96,428,367
  96,429,230
  96,429,510
  96,432,001
  96,434,643
  96,435,004
  96,436,514
  96,439,879
  96,439,973
  96,443,069
  96,443,151
  96,443,198
  96,443,334
  96,444,953
  96,447,565
  96,451,801
  96,460,725
  96,466,153
  96,466,155
  96,467,014
  96,470,000
  96,470,839
  96,480,660
  96,481,565
  96,483,677
  96,485,664
  96,485,849
  96,501,084
  96,501,569
  96,502,677
  96,503,066
  96,503,263
  96,503,266
  96,503,379
  96,503,588
  96,504,787
  96,505,580
  96,506,202
  96,508,962
  96,510,379
  96,511,313
  96,511,371
  96,513,548
  96,518,646
  96,520,130
  96,520,136
  96,520,598
  96,524,561
  96,524,864
  96,526,536
  96,527,026
  96,533,333
  96,534,740
  96,535,532
  96,535,996
  96,536,664
  96,536,665
  96,536,666
  96,536,674
  96,537,948
  96,538,004
  96,538,811
  96,540,042
  96,541,292
  96,541,436
  96,541,498
  96,544,410
  96,548,101
  96,554,169
  96,554,173
  96,554,329
  96,554,382
  96,554,597
  96,555,637
  96,555,653
  96,555,777
  96,556,809
  96,556,813
  96,556,991
  96,559,113
  96,559,435
  96,560,436
  96,561,518
  96,561,744
  96,561,774
  96,563,862
  96,564,036
  96,564,493
  96,564,646
  96,565,937
  96,565,989
  96,566,448
  96,566,729
  96,567,453
  96,568,637
  96,568,878
  96,570,318
  96,572,894
  96,573,670
  96,575,697
  96,576,938
  96,577,339
  96,578,165
  96,578,488
  96,579,073
  96,582,273
  96,584,685
  96,584,871
  96,586,480
  96,587,221
  96,593,908
  96,593,959
  96,594,068
  96,594,157
  96,594,347
  96,595,579
  96,597,135
  96,597,862
  96,598,119
  96,599,159
  96,599,198
  96,599,923
  96,601,677
  96,601,694
  96,602,768
  96,607,233
  96,609,924
  96,610,543
  96,611,318
  96,613,865
  96,614,938
  96,615,709
  96,615,957
  96,616,368
  96,616,401
  96,616,489
  96,616,667
  96,617,305
  96,617,496
  96,617,631
  96,617,953
  96,618,153
  96,618,173
  96,618,462
  96,618,811
  96,618,848
  96,618,994
  96,619,566
  96,619,869
  96,619,974
  96,620,089
  96,620,328
  96,620,432
  96,620,456
  96,620,486
  96,620,848
  96,620,892
  96,621,055
  96,621,186
  96,621,810
  96,622,158
  96,622,160
  96,622,514
  96,622,838
  96,622,920
  96,623,040
  96,623,093
  96,623,547
  96,623,627
  96,623,869
  96,623,972
  96,624,223
  96,624,514
  96,624,534
  96,624,550
  96,624,562
  96,624,635
  96,624,642
  96,625,307
  96,625,373
  96,625,422
  96,625,878
  96,626,219
  96,626,369
  96,626,394
  96,626,417
  96,626,640
  96,626,846
  96,627,547
  96,627,662
  96,627,765
  96,627,982
  96,628,667
  96,628,716
  96,628,817
  96,628,885
  96,628,929
  96,628,941
  96,629,044
  96,629,179
  96,629,184
  96,629,285
  96,629,395
  96,629,426
  96,629,467
  96,629,576
  96,629,618
  96,629,719
  96,629,862
  96,631,197
  96,631,422
  96,631,493
  96,631,837
  96,631,893
  96,632,169
  96,632,392
  96,632,789
  96,633,140
  96,633,202
  96,633,398
  96,633,436
  96,633,592
  96,633,784
  96,633,944
  96,634,025
  96,634,076
  96,634,712
  96,635,222
  96,635,355
  96,635,634
  96,635,958
  96,636,008
  96,636,224
  96,636,240
  96,636,373
  96,636,519
  96,636,538
  96,636,609
  96,636,621
  96,636,731
  96,636,794
  96,636,818
  96,636,820
  96,636,963
  96,637,147
  96,637,787
  96,638,127
  96,638,410
  96,638,552
  96,638,653
  96,638,793
  96,638,976
  96,639,606
  96,639,626
  96,640,174
  96,640,225
  96,640,244
  96,640,689
  96,641,277
  96,641,326
  96,641,489
  96,641,896
  96,642,036
  96,642,955
  96,643,501
  96,643,950
  96,644,481
  96,645,428
  96,645,479
  96,645,835
  96,646,125
  96,646,133
  96,646,301
  96,646,470
  96,646,962
  96,647,161
  96,647,482
  96,647,882
  96,647,912
  96,647,995
  96,648,528
  96,648,732
  96,648,744
  96,649,059
  96,649,567
  96,649,572
  96,649,573
  96,649,933
  96,650,078
  96,650,467
  96,651,847
  96,652,126
  96,652,435
  96,653,350
  96,653,621
  96,653,681
  96,653,716
  96,654,487
  96,655,048
  96,655,162
  96,655,192
  96,655,293
  96,655,401
  96,655,405
  96,655,561
  96,655,677
  96,655,914
  96,656,069
  96,656,608
  96,656,737
  96,656,879
  96,657,162
  96,657,404
  96,658,217
  96,659,086
  96,659,849
  96,660,772
  96,661,452
  96,661,631
  96,661,874
  96,661,876
  96,662,012
  96,662,047
  96,662,608
  96,663,203
  96,664,047
  96,664,155
  96,665,810
  96,665,811
  96,665,879
T
T
T
C
T
11
-
G
C
-
G
T
C
T
A
G
G
C
G
A
C
C
T
C
G
C
A
C
C
A
C
T
A
A/-
-/A
A
T
G
A
T
C
C
T
T
G
C
A
T
-
A
A
C
T
T
-
A
-
G
A
G
C
T
-/C
G
C
G
G/A
A
A
G
A
T/-
-/T
T/-
A/T
A
-
-
C
C
C
A
T
T
T
G
T
A
C
2
7
A
G/-
G/-
C
T
T
G
G
C
C
A
C
7
C
A
C
C
G
G
A
4
C
A
C
A
G
A
T
C
A
A
G
-
G
C/T
C
A
T
A
A
G
C
C
-
C
C
A
-
C
T
-
C
C
A
-
C
G
C
T
G
T
C
C
G
C
T
G
G
T
G
2
C
C
A
-
C
C
C
C
A
-
C
G
C
14
T
T
G
C
T
A
A
A
T
A
A
G
C
T
A
C
G
A
G
G
T
G
A
C
A
C
T
-
A
C
G
A
A
A
A
A
A
G
A
C
A
-
A
A
T
C
G
C
-
G
A
A
T
T
T
-
G
T
C
T
T
A
T
T
G
G
G
A
C
A
C
A
A
G
G
G
G
-
-
G
-/18
-/T
T/-
G
C
C
-
T
C
C
C
G
T
T
A
G
G
T
C
A
-
A
C
4
A
G
4
-
A
T
T
T
A
G
T
A
T
A
G
G
A
G
A
A
C
T
A
A
G
T
G
T
G
T
T
A
C
C
A
T
G
A
A
-
T
2
C
A
T
G
A
G
C
A
T
T
A
A
G
C
-
G
A
-
T
C
A
C
A
T