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  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 100,418 (bp)   Positions: 364
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
HXB4/IpcvMcwi (2020) 
1.0
.992
.889
.0
.004
.04
.004
.029
.01
.001
.001
.042
.004
.026
.003
.013
.003
.003
.021
.0
.004
.001
.001
.013
.008
.019
.009
.882
.039
.034
--
.001
.004
.001
.0
.0
.039
.329
.127
.0
.001
.0
.003
.001
.014
.001
.001
.0
.126
.0
.015
.001
.007
.983
.984
.991
.989
.986
.993
.997
.0
.0
.036
.0
.001
.042
--
.0
.079
.112
.0
.0
--
--
--
--
--
--
--
--
.073
.0
.0
.062
.0
.0
.003
.001
.001
.009
.009
.071
.084
.001
.003
.0
.0
.0
.002
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.0
.967
.0
.0
.0
.002
.002
.001
.003
.0
.001
.005
.0
.0
.001
.0
.012
.0
.015
.068
.009
.011
.002
.001
.016
.019
.004
.004
.003
.003
.0
.0
.0
.0
.0
.002
.001
.0
.0
.008
.004
.666
.002
.118
.001
.0
.001
.101
.0
.0
.001
.0
.015
.001
.126
.001
.0
.001
.0
.018
.0
.001
.019
.082
.003
.002
.003
.0
.0
.01
.0
.0
.14
.015
.0
.003
.0
.014
.049
.0
.009
.0
.002
.021
--
--
.024
.003
.001
.994
.0
.002
.003
.002
.0
.002
.0
.0
.078
.0
.0
.002
.017
.0
.044
.0
.0
.012
.0
.0
.026
.0
.001
.001
.007
.01
.002
.028
.001
.0
.0
.002
.0
.0
.001
.002
.001
.158
.0
.001
.039
.064
.008
.005
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.008
.118
.011
.014
.013
.002
.431
.028
.0
.15
.005
.111
.936
.003
.0
.001
.004
.002
.001
.128
.01
.004
.003
.0
.0
.001
.003
.0
.001
.0
.0
.004
.001
.0
.002
.003
.01
1.0
.0
.0
.003
.0
.96
.718
.004
.001
.303
.001
.003
.453
.018
.002
.005
.0
.0
.0
.967
.362
.096
.001
.322
.011
.003
.022
.0
.009
.062
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
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--
--
--
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--
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
Tspan12
-
13
A
-
A
A
T
G
A
T
A
-
A
-
G
C
T
C
G
C
C
T
T
G
T
2
C
-
G
G
C
G
G
A
-
G
T
A
C
T
C
A
5
G
T
-
A
A
T
T
A
G
G
T
A
G
-
5
A
4
G
T
C
A
T
A
2
G
G
-
A
G
T
A
A
G
A
A
G
G
C
T
G
T
T
A
T
-
T
T
A
T
T
-
G
G
T
G
C
A
A
C
A
G
G
G
G
-
T
G
G
A
G
C
G
T
A
A
C
G
C
C
A
C
C
C
G
G
A
C
T
G
T
C
-
A
G
G
G
G
T
T
-
C
C
T
G
C
T
C
C
T
G
C
A
A
G
A
-
A
C
T
A
2
A
A
G
A
A
A
A
C
G
T
C
T
T
3
T
G
T
G
-
G
T
3
C
T
T
-
A
C
G
-
A
C
A
G
G
C
T
T
G
A
G
T
A
G
-
2
A
G
T
C
T
A
C
T
A
G
T
A
T
T
A
T
G
A
G
T
A
T
G
T
T
C
G
C
T
T
G
-
G
C
C
T
T
A
C
A
C
A
C
G
T
A
T
T
A
A
T
C
G
G
T
G
T
C
T
G
T
C
C
T
A
C
T
A
G
A
A
C
A
G
T
T
G
T
A
A
T
G
A
G
-
T
-
A
A
G
G
A
-
T
G
G
T
C
A
G
G
T
C
A
C
A
G
A
T
C
G
A
G
C
G
2
-
T
C
8
-
A
A
G
T
A
C
G
G
C
G
G
A
C
G
T
T
-
-
G
A
C
G
T
G
T
T
A
T
-
A
G
T
4
  48,852,951
  48,853,368
  48,854,120
  48,854,483
  48,854,927
  48,855,950
  48,855,992
  48,856,187
  48,856,369
  48,856,731
  48,856,895
  48,856,984
  48,857,625
  48,857,861
  48,857,966
  48,858,306
  48,858,687
  48,858,692
  48,858,713
  48,858,767
  48,859,441
  48,859,585
  48,859,705
  48,860,113
  48,860,174
  48,860,426
  48,860,563
  48,860,976
  48,861,123
  48,861,541
  48,861,816
  48,862,226
  48,862,252
  48,862,292
  48,862,354
  48,862,775
  48,863,479
  48,863,722
  48,864,484
  48,864,539
  48,864,702
  48,864,947
  48,865,782
  48,865,929
  48,865,977
  48,866,114
  48,866,115
  48,866,120
  48,866,648
  48,866,686
  48,866,756
  48,866,902
  48,866,947
  48,867,255
  48,867,513
  48,867,523
  48,867,529
  48,867,530
  48,867,536
  48,867,538
  48,868,479
  48,868,960
  48,869,166
  48,869,612
  48,869,882
  48,871,034
  48,871,535
  48,872,166
  48,872,766
  48,873,414
  48,875,967
  48,876,217
  48,876,418
  48,876,546
  48,876,548
  48,876,643
  48,876,744
  48,876,839
  48,876,893
  48,877,709
  48,878,217
  48,878,246
  48,878,679
  48,879,360
  48,879,640
  48,879,978
  48,880,102
  48,880,157
  48,880,324
  48,880,390
  48,880,494
  48,880,878
  48,880,987
  48,881,085
  48,881,497
  48,882,033
  48,882,356
  48,882,451
  48,882,707
  48,882,849
  48,883,022
  48,883,409
  48,884,016
  48,884,384
  48,884,385
  48,884,406
  48,884,434
  48,884,476
  48,884,492
  48,884,515
  48,884,530
  48,884,854
  48,884,938
  48,885,491
  48,885,495
  48,886,150
  48,886,679
  48,886,784
  48,886,964
  48,887,421
  48,887,814
  48,887,847
  48,887,908
  48,887,994
  48,888,083
  48,888,111
  48,888,121
  48,888,193
  48,888,210
  48,888,362
  48,888,409
  48,888,417
  48,888,630
  48,888,637
  48,889,029
  48,889,109
  48,889,121
  48,889,232
  48,889,241
  48,889,281
  48,889,372
  48,889,482
  48,890,069
  48,890,108
  48,890,142
  48,890,607
  48,890,626
  48,890,636
  48,890,649
  48,890,729
  48,890,793
  48,890,836
  48,890,837
  48,890,844
  48,890,862
  48,890,991
  48,891,120
  48,891,208
  48,891,253
  48,891,819
  48,891,867
  48,892,190
  48,892,479
  48,892,558
  48,892,780
  48,892,909
  48,893,028
  48,893,137
  48,893,149
  48,893,777
  48,893,861
  48,894,063
  48,894,083
  48,894,120
  48,894,377
  48,894,584
  48,894,680
  48,894,682
  48,894,686
  48,894,728
  48,894,811
  48,895,207
  48,895,294
  48,895,425
  48,895,510
  48,895,569
  48,896,616
  48,896,725
  48,896,806
  48,896,831
  48,896,926
  48,897,494
  48,897,611
  48,897,651
  48,897,685
  48,897,936
  48,897,982
  48,898,201
  48,898,340
  48,898,400
  48,899,215
  48,899,329
  48,899,965
  48,900,751
  48,901,266
  48,902,328
  48,902,920
  48,902,998
  48,903,007
  48,903,009
  48,903,040
  48,903,206
  48,903,879
  48,903,912
  48,904,270
  48,904,428
  48,904,738
  48,905,190
  48,905,213
  48,905,484
  48,905,593
  48,905,693
  48,905,800
  48,905,829
  48,906,339
  48,906,446
  48,906,541
  48,906,686
  48,906,733
  48,906,767
  48,906,954
  48,907,003
  48,907,017
  48,907,036
  48,907,153
  48,907,718
  48,907,756
  48,908,009
  48,908,010
  48,908,275
  48,908,303
  48,908,316
  48,908,469
  48,908,495
  48,908,700
  48,908,710
  48,908,764
  48,908,800
  48,908,865
  48,908,972
  48,909,099
  48,909,107
  48,909,131
  48,909,151
  48,909,328
  48,909,356
  48,909,459
  48,909,468
  48,909,598
  48,909,653
  48,909,691
  48,909,744
  48,909,784
  48,909,834
  48,909,836
  48,909,855
  48,909,866
  48,909,869
  48,909,920
  48,909,983
  48,910,045
  48,910,073
  48,910,083
  48,910,097
  48,912,127
  48,912,477
  48,912,823
  48,912,941
  48,913,236
  48,913,251
  48,913,291
  48,913,394
  48,913,447
  48,913,453
  48,913,810
  48,914,281
  48,914,514
  48,914,554
  48,915,226
  48,915,245
  48,915,362
  48,915,371
  48,915,376
  48,915,558
  48,915,622
  48,915,663
  48,915,678
  48,915,799
  48,915,881
  48,915,965
  48,915,987
  48,916,334
  48,916,956
  48,917,617
  48,917,648
  48,917,835
  48,918,025
  48,918,374
  48,918,487
  48,918,597
  48,918,715
  48,918,860
  48,919,133
  48,919,446
  48,919,657
  48,920,062
  48,920,090
  48,920,261
  48,920,461
  48,920,519
  48,921,507
  48,921,940
  48,922,052
  48,922,157
  48,922,646
  48,922,692
  48,923,171
  48,923,464
  48,923,849
  48,923,967
  48,924,505
  48,924,569
  48,925,550
  48,925,577
  48,926,705
  48,927,494
  48,927,495
  48,927,800
  48,927,879
  48,927,961
  48,928,110
  48,928,974
  48,929,331
  48,930,630
  48,930,792
  48,931,437
  48,931,574
  48,932,443
  48,932,558
  48,933,931
  48,934,754
  48,935,577
  48,936,611
  48,937,152
  48,937,198
  48,938,416
  48,941,586
  48,941,879
  48,944,209
  48,944,568
  48,945,305
  48,948,206
  48,949,148
  48,950,492
A
-
T
7
G
G
G
A
G
A
G
4
G
2
A
T
C
T
A
T
A
G
C
A
C
-
-
4
A
A
A
C
C
G
A
A
C
C
T
C
T
G
-
C
C
4
G
C
C
C
G
T
C
C
G
A
2
-
C
-
C
-
-
C
C
G
-
A
A
T
C
C
C
G
C
A
A/G
T
A
A
A
G
A
C
C
G
C
G
C
C
G
C
-
T
C
A
C
A
T
G
T
T
G
G/A
G/T
G/A
G/A
-/A
T/A
G/A
G/A
A/G
G/A
C/T
G/T
G
G
G
G
A
T
T
G
T
T
G
A
A
T
T
C
T
G
A
T
G
C
A
T
A
C
G
156
T
G
C
A
G
C
T
T
C
A
T
G
G
A
G
G
G
T
C
G
-
G
C
A
G
G
G
T
T
A
G
T
-
C
-
G
T
A
A
T
A
C
-
A
C
-
T
G
T
T
A
G
T
C
T
A
T
C
G
T
G
A
C
G
T
3
-
G
A
G
G
C
G
A
C
C
A
C
T
C
C
G
T/-
A
G
A
G
T
C
A
C
A
T
A
T
A
C
A
6
A
T
A
C
A
G
A
G
T
G
G
A
C
C
A
C
G
C
G
C/A
G/C
G/C
T/C
G/C
T/A
C/T
T/A
T
A
T
A
A
T
C/T
C
A/G
A
A/-
A/G
C/A
T
A
T/A
T/A
A
G
A/G
T
G
T
G
A
G
A
T
G
G
C
C
G
T
G
A
T
A
T
G
T
C
C
G
G
G
G
T
G
C
T
C
G
T
G
A
-
2
C
G
-
A
G
C
T
C
A/G
C/G
C
T
T
A
A
G
A
A
C
-
8
2
A
G
T
T
A
A
A
C
G
G
C
T
T
C
-