Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 89,614 (bp)   Positions: 243
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
WKY/NCrl (2019) 
.0
.001
.0
.021
.0
.0
.007
.001
.782
.966
.001
.0
.001
.01
.0
.004
.174
.036
.004
.184
.045
.002
.006
.0
.001
.0
.896
.0
.006
.0
.0
.001
.0
.004
.006
.01
.0
.011
.105
.024
.0
.004
.0
.001
.0
.0
1.0
.983
.001
.047
.0
.014
.097
.59
.094
.018
.008
.143
.143
--
--
--
.016
.029
.014
.0
.007
.005
.002
.151
.001
.004
.006
.005
.03
.013
.004
.009
.018
.113
1.0
.0
.009
.038
.0
--
.668
.002
.012
.0
.0
.0
.018
.001
.001
.017
.001
.0
.066
.388
--
.023
.001
.0
.0
.0
.002
.001
.207
.442
.466
.0
.214
.0
.108
.092
.01
.288
.011
.997
.025
.011
.004
.006
.0
.138
.0
--
.084
.024
.118
.152
.015
.007
.01
.015
.011
.079
.0
.991
.986
--
.002
.001
.001
.001
.004
.0
.006
.873
.0
.0
.001
.896
.0
.0
.112
.0
.001
.004
.014
.003
.0
.01
.791
.028
.01
.001
.001
.027
.0
.078
.003
.807
.011
.004
--
.21
.285
.051
.079
.004
.069
.003
.253
.014
.0
1.0
.026
.006
.0
.0
.001
.002
.0
.65
.068
.012
.181
.082
.177
.002
--
--
--
--
--
--
.099
.001
.0
.001
.0
.001
.0
.667
.037
.021
.014
1.0
.027
.583
.004
.091
.058
.001
.045
.001
.062
.0
.026
.679
.981
.764
.0
.002
.004
.01
.001
.0
.013
.01
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
Trrap
A
G
G
A
G
G
A
C
C
C
C
A
G
T
T
C
C
C
A
G
C
A
T
T
T
G
A
C
C
C
T
C
G
A
C
-
T
A
G
-
G
4
A
A
G
G
T
G
C
G
T
C
-
A
C
T
T
G
G
C
C
G
G
C
G
T
C
C
A
C
G
-
G
G
G
G
A
C
C
28
G
A
A
C
A
22
G
C
6
G
A
G
G
G
A
A
T
G
A
C
G
C
G
A
T
T
G
-
C
A
-
G
A
A
G
A
G
A
A
A
C
G
T
11
T
G
C
-
-
-
A
A
C
T
C
-
G
C
C
T
T
A
G
T
A
T
C
C
G
G
C
2
A
T
T
G
A
A
C
A
-
T
-
C
T
-
2
C
C
G
T
G
G
A
G
A
A
A
2
T
T
-
A
A
C
T
C
G
12
A
G
A
A
C
A
A
T
A
G
C
A
T
G
G
T
T
G
C
A
A
T
T
C
A
G
C
C
A
A
C
T
A
4
C
A
-
T
A
A
C
A
A
A
A
G
C
C
A
G
G
C
-
A
  11,538,281
  11,538,311
  11,538,379
  11,538,395
  11,538,554
  11,538,603
  11,538,730
  11,538,759
  11,538,963
  11,538,966
  11,539,143
  11,539,199
  11,539,246
  11,539,316
  11,539,450
  11,539,587
  11,539,660
  11,539,666
  11,539,753
  11,539,881
  11,539,890
  11,539,947
  11,540,224
  11,540,241
  11,540,267
  11,540,350
  11,540,408
  11,540,609
  11,540,613
  11,540,632
  11,540,877
  11,540,911
  11,540,922
  11,541,313
  11,541,570
  11,541,981
  11,541,988
  11,542,065
  11,542,137
  11,542,172
  11,542,798
  11,542,811
  11,542,816
  11,543,020
  11,543,167
  11,543,817
  11,544,117
  11,544,234
  11,544,322
  11,544,357
  11,544,426
  11,544,634
  11,545,068
  11,545,098
  11,545,210
  11,545,389
  11,545,403
  11,545,464
  11,545,465
  11,545,516
  11,545,518
  11,545,579
  11,545,749
  11,545,983
  11,546,048
  11,546,440
  11,547,063
  11,547,110
  11,547,280
  11,547,779
  11,547,827
  11,547,930
  11,548,620
  11,548,623
  11,548,654
  11,548,680
  11,548,808
  11,548,892
  11,549,011
  11,549,824
  11,550,478
  11,551,805
  11,552,290
  11,552,557
  11,553,292
  11,553,707
  11,553,918
  11,554,185
  11,554,336
  11,554,406
  11,554,446
  11,554,466
  11,554,605
  11,554,677
  11,554,719
  11,555,007
  11,555,080
  11,555,192
  11,555,229
  11,555,440
  11,555,944
  11,556,312
  11,556,480
  11,556,500
  11,556,787
  11,556,858
  11,556,919
  11,557,331
  11,557,361
  11,559,409
  11,559,411
  11,561,893
  11,564,178
  11,564,378
  11,565,115
  11,565,116
  11,566,426
  11,566,948
  11,567,199
  11,568,392
  11,570,639
  11,573,379
  11,573,385
  11,573,758
  11,575,231
  11,575,735
  11,576,062
  11,577,586
  11,577,629
  11,577,657
  11,577,685
  11,577,702
  11,577,719
  11,577,723
  11,577,730
  11,577,739
  11,578,471
  11,579,111
  11,579,371
  11,579,831
  11,579,888
  11,580,002
  11,583,394
  11,583,400
  11,583,495
  11,583,725
  11,583,926
  11,584,014
  11,584,669
  11,585,056
  11,585,475
  11,585,556
  11,585,641
  11,586,086
  11,586,137
  11,588,253
  11,588,708
  11,589,001
  11,589,883
  11,590,328
  11,591,578
  11,592,423
  11,592,688
  11,592,987
  11,593,302
  11,594,051
  11,594,260
  11,594,287
  11,594,397
  11,595,705
  11,595,772
  11,596,177
  11,596,601
  11,596,879
  11,597,593
  11,597,914
  11,598,132
  11,598,355
  11,598,630
  11,598,787
  11,599,150
  11,599,628
  11,599,640
  11,599,808
  11,600,001
  11,601,284
  11,602,068
  11,602,368
  11,602,653
  11,602,678
  11,602,885
  11,603,958
  11,604,102
  11,604,115
  11,604,280
  11,605,431
  11,605,901
  11,605,983
  11,606,182
  11,606,198
  11,608,647
  11,609,090
  11,609,315
  11,609,318
  11,609,334
  11,609,339
  11,609,340
  11,609,348
  11,609,909
  11,610,537
  11,610,712
  11,611,568
  11,612,021
  11,612,368
  11,612,867
  11,613,204
  11,613,492
  11,614,785
  11,615,096
  11,616,032
  11,616,606
  11,616,884
  11,617,565
  11,617,640
  11,617,651
  11,618,351
  11,618,436
  11,620,242
  11,620,674
  11,621,293
  11,621,679
  11,621,837
  11,621,920
  11,622,058
  11,622,432
  11,622,544
  11,622,743
  11,623,155
  11,623,198
  11,623,793
  11,625,258
  11,625,729
  11,627,343
G
A
-
G
A
A
G
T
T
T
T
G
A
A
G
T
T
T
G
A
T
G
C
C
C
A
C
T
T
T
C
T
A
G
T
8
C
G
A
T
A
-
T
G
A
C
C
A
T
A
G
A
6
G
T
C
C
A
C
T
T
A
A
T
T
C
T
T
T
A
A
37
A
A
A
A
T
G
T
-
A
T
G
-
G
-
A
T
-
A
T
C
A
T
G
T
C
A
G
-
A
A
C
G
C
C
T
2
A
G
4
C
G
G
A
C
T
T
G
G
T
A
C
-
A
A
T
3
T
G
-
-
-
-
-
G
A
T
T
C
C
G
A
C
G
C
T
T
C
A
A
-
C
A
A
A
G
G
T
G
4
C
30
T
C
3
-
T
T
A
A
A
A
G
A
C
G
G
-
C
C
4
G
G
T
C
T
A
-
G
A
G
C
T
T
-
G
G
A
G
C
C
-
-
G
G
T
T
G
G
C
C
T
G
C
T
A
T
G
T
G
T
-
T
G
C
C
G
G
T
G
G
G
G
A
T
T
G
C
A
T
5
G