Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 154,049 (bp)   Positions: 267
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
LH/MavRrrc (RGD) 
.003
.005
.106
--
.032
.002
.52
.001
.006
1.0
.843
.039
.001
.004
.0
.372
.242
.011
.0
.034
.0
.001
.001
.0
.017
.713
.003
.056
.019
.002
.376
.012
.0
.0
.031
.015
.026
.057
.025
--
--
.816
.92
--
.552
.007
.009
.002
.002
.001
.018
.001
.418
.012
.0
.001
.001
.018
.011
.077
.639
.0
.005
.005
.0
.001
.905
.014
.005
.0
.013
.0
.003
.006
.0
.001
.998
.048
.824
--
--
.078
.022
.001
.001
.034
.027
.01
.0
.135
.041
.32
.962
.0
.0
.001
.0
.025
.212
.004
.001
.0
.005
.002
.004
.181
.024
.056
.0
.01
.012
.001
.043
--
--
.005
.108
.029
.003
.0
--
.027
.001
.003
.0
.001
.001
.0
.005
.0
.001
.067
.091
.002
.001
.001
.019
.007
.0
.041
.025
.0
.001
.01
.0
.0
.0
.039
.009
1.0
.0
.0
.998
.0
.003
.38
.001
.134
.013
.023
.001
.063
.046
.032
.016
.019
.139
.11
.068
.091
--
.001
.06
.0
.0
.0
.001
.001
.014
.0
.005
.012
.0
.0
.051
.016
.017
.0
.0
.019
.001
.002
.0
.0
.016
.095
.0
.089
.0
.0
.0
.001
.0
.0
.0
.001
.003
.001
.002
.003
.003
.0
.002
.01
.001
.077
.0
.002
.0
.0
.0
.0
.001
.003
.0
.182
.0
.0
.001
--
.0
.005
.001
.0
.029
.071
.012
.427
.646
.001
.033
.002
.0
.003
.0
.001
.014
.0
.002
.0
.0
.035
.011
.001
.002
.0
.061
.077
.973
.0
.001
.001
.001
.0
.003
.001
.0
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
Snx24
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
A
C
A
C
G
G
G
T
G
A
C
G
G
T
T
A
G
G
C
A
T
G
C
A
A
A
G
C
G
T
C
C
C
G
C
A
C
C
T
A
T
G
T
G
G
T
T
C
G
A
T
C
C
C
A
C
C
T
A
T
T
T
A
G
A
A
A
T
C
C
A
A
T
T
T
G
C
G
C
A
C
C
C
C
C
C
T
A
C
A
T
G
G
C
G
T
A
A
T
A
G
A
T
G
G
C
G
C
G
G
C
T
A
T
A
G
A
C
A
T
G
C
C
G
C
C
C
A
T
A
A
A
C
T
A
C
A
C
T
T
G
C
T
T
G
T
T
G
A
A
T
C
T
C
C
G
C
C
A
G
G
C
C
T
T
C
T
T
G
T
A
T
T
C
T
A
A
A
T
T
G
C
A
G
G
C
T
A
G
C
A
G
A
G
A
T
A
A
T
C
T
G
T
G
C
A
A
A
A
T
C
C
T
A
G
C
G
C
T
T
A
G
G
G
T
T
C
T
T
G
C
C
A
A
A
A
C
C
A
G
A
C
T
A
A
G
A
A
C
T
G
G
A
C
T
C
G
T
C
G
G
C
G
C
C
T
  48,204,901
  48,206,822
  48,208,323
  48,214,325
  48,216,139
  48,216,181
  48,219,533
  48,222,481
  48,222,908
  48,223,391
  48,223,732
  48,226,239
  48,226,511
  48,226,633
  48,227,270
  48,228,602
  48,228,737
  48,229,867
  48,230,185
  48,230,311
  48,232,927
  48,233,452
  48,235,100
  48,236,321
  48,236,523
  48,237,170
  48,237,814
  48,238,017
  48,239,557
  48,241,247
  48,241,698
  48,243,570
  48,245,633
  48,248,037
  48,248,169
  48,248,617
  48,249,066
  48,249,642
  48,249,646
  48,251,329
  48,251,336
  48,251,372
  48,251,405
  48,251,537
  48,251,712
  48,252,106
  48,252,122
  48,252,470
  48,252,642
  48,252,828
  48,252,848
  48,253,069
  48,253,666
  48,253,807
  48,253,960
  48,254,515
  48,254,521
  48,254,894
  48,255,292
  48,255,559
  48,255,676
  48,255,922
  48,256,542
  48,257,176
  48,257,392
  48,257,506
  48,257,525
  48,257,552
  48,257,794
  48,257,835
  48,259,420
  48,259,465
  48,259,483
  48,259,707
  48,259,767
  48,259,992
  48,260,819
  48,261,218
  48,261,936
  48,266,671
  48,267,419
  48,270,040
  48,270,054
  48,270,977
  48,270,996
  48,271,512
  48,272,388
  48,273,032
  48,273,088
  48,273,539
  48,273,937
  48,274,192
  48,274,937
  48,275,153
  48,275,985
  48,275,989
  48,276,224
  48,276,725
  48,277,285
  48,277,382
  48,277,416
  48,277,532
  48,277,585
  48,277,696
  48,278,177
  48,279,868
  48,281,327
  48,281,531
  48,281,677
  48,281,792
  48,281,894
  48,281,907
  48,282,609
  48,282,724
  48,282,972
  48,283,182
  48,283,257
  48,283,315
  48,283,363
  48,283,481
  48,284,834
  48,285,102
  48,285,748
  48,285,797
  48,286,584
  48,286,765
  48,286,906
  48,287,296
  48,287,530
  48,287,556
  48,288,636
  48,289,241
  48,289,386
  48,289,553
  48,289,810
  48,289,821
  48,290,522
  48,290,968
  48,291,621
  48,291,736
  48,292,208
  48,292,422
  48,292,726
  48,292,797
  48,292,993
  48,293,047
  48,295,314
  48,298,371
  48,299,244
  48,300,193
  48,300,963
  48,300,966
  48,301,961
  48,302,070
  48,302,107
  48,302,282
  48,302,320
  48,302,976
  48,303,452
  48,303,453
  48,303,677
  48,303,790
  48,303,841
  48,305,484
  48,305,884
  48,306,043
  48,307,317
  48,307,757
  48,307,835
  48,307,844
  48,307,958
  48,308,604
  48,308,730
  48,309,676
  48,310,341
  48,310,621
  48,310,657
  48,311,783
  48,312,379
  48,313,506
  48,313,618
  48,314,114
  48,315,435
  48,315,443
  48,315,484
  48,316,482
  48,316,484
  48,317,187
  48,317,354
  48,317,418
  48,317,473
  48,318,239
  48,318,393
  48,318,482
  48,321,322
  48,321,373
  48,322,380
  48,322,709
  48,323,112
  48,324,045
  48,324,222
  48,324,348
  48,324,409
  48,324,619
  48,324,707
  48,324,832
  48,324,895
  48,325,802
  48,325,894
  48,326,037
  48,326,188
  48,326,283
  48,326,287
  48,326,961
  48,327,325
  48,327,407
  48,327,655
  48,328,093
  48,328,101
  48,328,111
  48,328,118
  48,328,161
  48,328,640
  48,328,757
  48,329,965
  48,330,051
  48,330,571
  48,331,572
  48,331,573
  48,335,383
  48,336,595
  48,336,763
  48,336,878
  48,338,067
  48,338,224
  48,338,243
  48,339,283
  48,339,335
  48,339,343
  48,339,867
  48,340,251
  48,340,461
  48,341,336
  48,341,505
  48,341,597
  48,341,759
  48,342,225
  48,342,253
  48,342,313
  48,342,329
  48,342,491
  48,342,505
  48,342,622
  48,342,668
  48,343,114
  48,343,367
  48,343,713
  48,343,714
  48,344,058
  48,344,655
  48,345,444
  48,349,380
  48,351,227
  48,351,245
  48,351,516
  48,351,847
  48,353,190
A
G
T
G
A
C
T
A
C
C
G
T
A
C
G
C
C
T
C
T
G
C
T
A
G
G
G
A
T
A
G
T
G
T
C
T
G
T
T
C
G
C
A
C
A
A
C
C
G
A
G
C
A
T
G
C
A
T
C
C
C
A
C
C
A
G
G
G
C
G
A
G
C
C
A
A
C
T
A
T
T
T
T
T
T
T
T
C
C
T
G
C
A
A
T
A
C
G
G
C
G
A
G
G
C
A
T
T
T
A
A
G
C
T
C
T
C
C
T
G
C
A
T
A
A
T
T
T
G
C
G
G
C
T
A
G
T
G
T
G
C
A
A
C
G
T
C
C
A
C
G
A
G
C
A
G
C
T
T
G
A
A
C/A
G
C
C
T
C
C
C
C
C
A
C
T
C
G
G
G
C
C
T
G
G
A
A
T
C
G
A
T
G
A
G
C
C
C
G
G
C
G
G
C
C
A
T
G
G
G
T
A
G
T
C
G
C
A
C
A
C
G
G
A
A
A
C
G
A
G
G
A
T
T
C
C
G
G
T
T
G
A
G
T
C
C
C
A
G
C
T
A
T
A
G
T
C
A
A
G
T
A
A
T
A
T
T
C