Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 117,215 (bp)   Positions: 173
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
BBDP/Wor (RGD) 
.997
.0
.002
.007
.001
.035
.119
.001
.0
.002
.006
.015
.562
.0
.001
.004
.002
.003
.028
.011
.004
.0
.001
.254
.001
.002
.0
1.0
.002
.001
.008
.015
.026
.027
.003
.793
.315
.008
.005
.001
.001
.299
.024
.017
.004
.478
.0
.001
.0
.001
.005
.173
.076
.032
.003
.006
.004
.0
.0
.002
.001
.001
.008
.034
.0
.014
.0
.0
.001
.001
.0
.0
.738
.004
.0
.007
.016
.0
.0
.022
.0
.003
.001
.013
.002
.0
.006
.0
.002
.016
.072
.0
.001
.628
.0
.091
.001
.0
.004
.0
.002
.001
.0
.002
.006
.0
.982
.0
.041
.002
.0
.0
.0
.0
.012
.031
.001
.008
.116
.0
.977
.001
.054
.002
.0
.019
.202
.186
.003
.0
.001
.0
.209
.032
.0
.9
.0
.003
.032
.247
.061
1.0
.998
.001
.002
.001
.0
.991
.011
.026
.302
.0
.001
.0
.0
.0
.015
.001
.001
.151
.02
.177
.001
.036
.0
--
.009
.024
.527
.001
.0
.0
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
Snap91
C
C
T
G
C
T
G
C
T
C
G
G
T
C
G
A
C
T
A
C
C
G
T
C
A
T
T
C
G
T
A
C
C
A
T
C
T
C
A
A
T
T
A
T
C
A
C
G
C
C
A
G
G
T
T
C
C
G
C
A
C
G
T
T
C
T
A
G
T
T
G
A
A
A
G
T
A
C
G
A
T
T
C
T
A
G
G
A
G
C
G
A
T
A
T
T
A
G
A
T
C
T
T
G
G
G
G
A
G
C
C
C
G
T
C
A
A
C
G
G
T
G
C
A
T
A
C
T
C
A
A
G
C
C
A
A
T
G
C
T
G
T
C
A
G
G
G
G
A
T
C
A
A
A
T
T
T
A
G
C
A
C
A
C
T
G
G
C
A
T
C
T
A
  94,448,474
  94,449,500
  94,455,009
  94,455,624
  94,455,892
  94,456,545
  94,456,949
  94,458,496
  94,459,342
  94,459,848
  94,460,156
  94,460,508
  94,460,829
  94,461,529
  94,461,542
  94,461,580
  94,462,010
  94,462,731
  94,462,862
  94,463,314
  94,463,675
  94,463,849
  94,463,968
  94,464,173
  94,464,217
  94,464,416
  94,464,494
  94,475,330
  94,479,084
  94,480,489
  94,480,627
  94,480,822
  94,480,969
  94,481,010
  94,481,307
  94,481,675
  94,481,679
  94,482,330
  94,482,706
  94,482,751
  94,482,891
  94,482,896
  94,482,995
  94,483,061
  94,483,064
  94,483,208
  94,483,311
  94,483,515
  94,483,579
  94,483,844
  94,483,952
  94,483,997
  94,484,201
  94,484,751
  94,485,179
  94,485,220
  94,485,266
  94,485,942
  94,486,396
  94,486,752
  94,487,101
  94,487,291
  94,487,338
  94,487,553
  94,487,638
  94,487,645
  94,488,141
  94,488,187
  94,488,188
  94,488,618
  94,488,780
  94,489,119
  94,491,799
  94,492,243
  94,492,636
  94,493,608
  94,493,622
  94,494,197
  94,494,345
  94,494,689
  94,494,814
  94,495,768
  94,496,084
  94,496,268
  94,496,326
  94,496,491
  94,496,659
  94,496,880
  94,496,943
  94,497,215
  94,497,233
  94,497,564
  94,497,590
  94,497,604
  94,497,716
  94,498,105
  94,498,620
  94,499,210
  94,499,368
  94,499,383
  94,499,909
  94,500,374
  94,500,586
  94,500,815
  94,500,887
  94,501,384
  94,501,565
  94,503,043
  94,503,741
  94,503,934
  94,504,489
  94,505,667
  94,506,049
  94,507,054
  94,507,218
  94,508,682
  94,508,744
  94,508,920
  94,509,363
  94,509,521
  94,509,863
  94,510,049
  94,510,278
  94,510,303
  94,510,517
  94,511,720
  94,511,724
  94,512,213
  94,514,289
  94,514,385
  94,515,607
  94,525,398
  94,526,370
  94,526,434
  94,526,748
  94,527,584
  94,528,254
  94,528,297
  94,528,437
  94,528,439
  94,528,469
  94,528,484
  94,528,539
  94,528,597
  94,528,613
  94,528,626
  94,529,103
  94,530,445
  94,532,213
  94,533,410
  94,533,933
  94,538,701
  94,539,271
  94,542,279
  94,543,599
  94,546,246
  94,546,671
  94,548,049
  94,552,295
  94,553,026
  94,555,023
  94,555,112
  94,556,402
  94,557,450
  94,557,620
  94,559,027
  94,560,831
  94,560,992
  94,561,009
  94,561,802
  94,562,895
  94,563,948
  94,564,452
T
A
A
A
T
C
A
T
C
T
C
A
C
T
A
G
T
C
G
T
T
A
C
T
T
C
C
T
A
C
G
T
G
T
G
T
A
T
T
G
C
C
C
C
T
T
T
A
T
G
G
A
T
C
C
T
G
A
G
G
G
A
C
C
A
A
C
T
C
G
A
G
G
T
A
C
T
T
A
T
C
C
A
A
C
A
A
G
A
A
A
G
C
G
C
C
G
A
G
G
T
C
C
A
A
T
A
G
T
T
T
G
A
C
A
G
G
T
A
A
C
C
T
G
C
G
T
C
T
G
G
A
A
T
C
G
T/C
G/A
C/T
T/G
G/T
T/C
C/T
A/G
G/A
G/C
C
A
G
C
T
G
G
G
C
C
C
G
T
T
G
T
C
A
C
T
A
T
T
A
T
C
G