Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 52,778 (bp)   Positions: 171
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
FHH/EurMcwi (2019) 
.001
.435
.008
.0
.0
.004
--
.0
.0
1.0
.022
.0
.001
.0
.033
.088
.001
.172
.17
.0
.429
.004
.89
.623
.0
.0
.669
.001
.007
.037
.113
.0
.027
.025
.028
.599
.447
.861
.003
.0
.006
.005
.0
.0
.0
.001
.001
.0
.0
.0
.0
.003
.002
.023
.007
.0
.029
.0
.127
.001
.19
.038
.001
.027
.003
.134
.004
.0
.003
.002
.0
.0
.001
.33
.397
.033
.045
.017
.196
.058
.0
.011
.032
.007
.012
.003
.05
.0
.002
.0
.036
.019
.0
.183
.0
.0
.003
.003
.002
.001
.004
.0
.011
.028
.504
.213
.284
.007
.0
.001
.0
.0
.008
.006
.005
.02
.01
.0
.033
.105
.002
.003
.004
.272
.212
.005
.084
.017
.001
.474
.028
.0
.0
.0
.0
.008
.053
.035
.475
.047
.0
.001
.001
.02
.006
.016
.007
.0
.738
.005
.0
.0
.002
.0
.0
.068
.001
.001
.01
.01
.001
.098
.348
.333
.07
.001
.065
.04
.0
.0
.018
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108352146
LOC108352146
LOC108352146
LOC108352146
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
Scn4a
A
C
-
G
-
C
C
A
C
G
2
C
A
T
C
T
C
20
A
T
G
T
-
-
T
T
C
C
C
T
A
A
C
T
-
G
2
G
C
A
A
G
A
A
T
T
G
T
G
G
A
T
A
29
C
A
A
C
A
C
A
A
T
C
T
C
-
C
T
C
A
A
T
-
G
G
A
T
C
G
C
8
A
T
G
-
G
-
T
T
2
A
T
G
A
A
A
G
C
C
T
A
-
T
-
-
-
A
A
A
G
G
G
T
T
C
A
A
-
A
-
T
T
A
G
T
-
G
G
6
T
G
A
-
-
5
-
C
2
T
C
A
A
-
C
-
G
G
C
-
C
C
G
G
C
-
T
A
T
T
C
G
T
T
G
-
A
-
A
C
C
  94,509,973
  94,512,322
  94,513,855
  94,513,872
  94,513,887
  94,513,980
  94,515,558
  94,516,034
  94,516,192
  94,518,743
  94,519,223
  94,521,427
  94,521,565
  94,522,373
  94,522,888
  94,523,249
  94,523,600
  94,524,964
  94,527,219
  94,527,253
  94,527,928
  94,530,184
  94,531,704
  94,531,901
  94,533,618
  94,533,910
  94,534,043
  94,534,439
  94,534,524
  94,534,539
  94,534,740
  94,534,848
  94,535,080
  94,535,093
  94,535,095
  94,535,176
  94,535,188
  94,535,195
  94,535,265
  94,535,268
  94,535,461
  94,535,465
  94,535,512
  94,535,583
  94,535,595
  94,535,615
  94,535,640
  94,535,663
  94,535,664
  94,535,690
  94,535,694
  94,536,093
  94,536,547
  94,536,928
  94,537,138
  94,537,769
  94,537,829
  94,537,923
  94,537,995
  94,538,178
  94,538,318
  94,538,488
  94,538,508
  94,538,513
  94,538,627
  94,538,736
  94,539,009
  94,539,024
  94,539,181
  94,539,247
  94,539,259
  94,539,360
  94,539,420
  94,539,465
  94,539,551
  94,539,678
  94,539,698
  94,539,956
  94,540,748
  94,540,873
  94,540,883
  94,540,993
  94,541,046
  94,541,051
  94,541,052
  94,541,160
  94,541,251
  94,541,649
  94,542,149
  94,542,375
  94,543,279
  94,543,370
  94,543,422
  94,543,623
  94,543,735
  94,543,745
  94,544,545
  94,544,571
  94,544,785
  94,545,492
  94,545,627
  94,546,110
  94,546,464
  94,546,477
  94,546,490
  94,546,512
  94,546,536
  94,546,633
  94,546,781
  94,546,865
  94,547,155
  94,547,210
  94,548,558
  94,549,065
  94,549,145
  94,549,701
  94,549,708
  94,549,711
  94,549,744
  94,550,155
  94,550,410
  94,550,477
  94,550,490
  94,550,635
  94,550,639
  94,551,325
  94,551,701
  94,552,180
  94,552,268
  94,552,389
  94,552,403
  94,552,428
  94,552,566
  94,553,062
  94,553,065
  94,553,081
  94,553,104
  94,553,122
  94,553,314
  94,553,511
  94,553,522
  94,553,998
  94,553,999
  94,554,094
  94,554,310
  94,554,537
  94,554,601
  94,554,680
  94,554,787
  94,554,857
  94,554,915
  94,555,006
  94,555,038
  94,555,117
  94,555,223
  94,555,334
  94,555,401
  94,555,471
  94,555,527
  94,555,603
  94,555,840
  94,555,874
  94,556,361
  94,556,375
  94,556,402
  94,556,473
  94,556,637
  94,556,661
  94,556,771
  94,557,042
  94,557,319
G
T
8
A
C
T
G
G
T
A
-
T
G
C
T
C
A
-
G
C
T
C
2
2
C
C
G
T
T
C
C
C
T
C
A
-
-
A
T
G
G
A
G
G
C
A
A
C
A
A
G
C
C
-
T
G
C
T
C
T
G
C
C
G
C
G
T
T
C
T
G
G
G
C
A
A
G
G
T
A
T
-
G
C
A
4
A
T
C
C
-
G
G
A
G
G
G
A
T
T
C
G
44
C
3
4
28
T
G
G
A
T
A
C
C
T
G
T
A
G
C
C
C
G
-
A
4
T
A
-
C
A
C
20
17
-
A
A
-
T/A
C/T
T
T
C
T
5
A
A
A
C
T
A
A
C
T
T
G
G
C
C
G
A
-
-
A
2
G
T
G
T
-