Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 134,099 (bp)   Positions: 244
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
F344/NRrrc (MCW) 
.774
.0
.019
.0
.004
.0
.004
.002
.026
--
--
.078
.004
.012
.192
.365
.985
.0
.007
.072
.088
.219
.0
--
.001
.108
.002
.001
.002
.009
.449
.585
.019
.0
.005
.002
.006
.003
.545
.441
.059
.002
.267
.001
.017
.633
.1
.0
.011
.004
.193
.011
.0
.004
.007
.0
.002
.018
.111
1.0
1.0
.0
.24
.959
.978
.001
.0
.0
.001
.35
.006
.001
.0
.001
.0
.004
.052
.003
1.0
.007
.0
.036
.022
.001
.046
--
--
.226
.006
.003
.001
.93
.048
.002
.026
.069
.049
.179
.026
.007
.089
.056
.0
.0
.371
.0
.009
.0
.004
.011
.001
.0
.0
.002
.001
.0
.827
.0
.002
.001
.022
.008
.092
.0
.009
.0
.001
.006
.003
.948
.002
.002
--
--
--
--
.0
.002
.0
.022
.001
.011
.933
.005
.001
.0
.001
.003
.004
.0
.001
.001
.003
.001
.001
.0
.049
.0
.0
.007
.007
.003
.017
.065
.002
.003
.006
.003
.025
.058
.006
.309
.529
.69
.008
.002
.051
.018
.022
.0
.002
.581
.0
.005
.0
.002
.003
.056
.028
.002
.257
.0
.063
.002
.0
.0
.006
.0
.0
.226
.017
.005
.0
.001
.0
.207
.387
.002
--
--
--
.157
.01
.0
.0
.0
.206
.009
.001
.006
.001
.0
.001
.243
.0
.017
.001
.0
.0
.004
.003
.0
.001
.0
.0
.0
.0
.001
.009
.996
.0
.062
.0
.997
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
Scn2a
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
A
T
C
G
T
A
T
G
G
C
G
A
A
C
A
C
C
T
C
C
C
T
G
T
T
C
C
C
A
T
T
T
C
T
A
T
C
T
A
A
T
T
T
A
C
A
T
C
C
G
C
C
G
C
T
G
A
C
T
C
G
T
G
C
C
G
G
C
C
A
T
G
T
C
C
T
A
T
T
C
C
G
G
T
T
T
G
C
C
T
T
T
A
G
A
C
G
T
C
C
G
T
A
C
T
T
C
T
T
C
A
G
A
A
G
A
G
T
G
G
G
C
A
C
G
G
A
T
A
G
C
G
T
T
T
G
C
A
A
G
C
T
T
A
A
C
T
G
C
A
A
A
A
C
G
G
A
C
G
A
C
G
T
C
A
T
C
C
C
C
G
G
C
C
G
G
A
T
T
C
A
G
G
C
T
C
A
T
G
C
G
T
C
C
C
T
C
C
T
C
C
A
G
C
G
T
T
C
T
A
A
C
C
T
G
G
A
C
G
T
T
G
C
T
C
T
T
G
A
G
T
A
T
C
T
G
T
T
G
A
A
G
T
  51,688,364
  51,691,530
  51,692,064
  51,693,496
  51,694,358
  51,694,410
  51,695,090
  51,696,258
  51,698,657
  51,700,520
  51,701,063
  51,703,219
  51,711,518
  51,719,032
  51,720,186
  51,720,590
  51,723,012
  51,723,517
  51,723,674
  51,730,944
  51,731,447
  51,732,192
  51,732,789
  51,733,792
  51,734,520
  51,734,956
  51,735,130
  51,735,132
  51,735,134
  51,735,357
  51,736,453
  51,737,467
  51,739,208
  51,739,323
  51,739,558
  51,739,807
  51,739,866
  51,739,965
  51,740,373
  51,740,381
  51,740,644
  51,740,704
  51,740,829
  51,740,941
  51,741,020
  51,741,136
  51,741,169
  51,741,425
  51,741,486
  51,742,103
  51,742,811
  51,743,172
  51,743,466
  51,744,231
  51,746,660
  51,747,417
  51,749,568
  51,749,585
  51,749,717
  51,750,349
  51,751,038
  51,751,446
  51,751,719
  51,751,747
  51,751,786
  51,752,198
  51,752,308
  51,752,368
  51,752,432
  51,752,638
  51,752,653
  51,752,951
  51,753,185
  51,753,649
  51,754,239
  51,754,244
  51,754,944
  51,755,042
  51,756,217
  51,757,608
  51,757,793
  51,759,636
  51,764,134
  51,765,633
  51,766,099
  51,766,995
  51,767,004
  51,767,567
  51,768,118
  51,768,424
  51,770,076
  51,771,821
  51,773,263
  51,775,067
  51,775,638
  51,776,175
  51,776,383
  51,776,505
  51,776,522
  51,776,756
  51,776,852
  51,777,116
  51,777,342
  51,777,389
  51,777,559
  51,777,600
  51,777,616
  51,778,171
  51,778,649
  51,778,714
  51,778,955
  51,778,962
  51,779,354
  51,780,003
  51,780,132
  51,780,364
  51,780,636
  51,781,129
  51,781,180
  51,781,527
  51,782,031
  51,782,273
  51,782,543
  51,783,146
  51,783,394
  51,784,000
  51,784,117
  51,784,352
  51,784,423
  51,785,022
  51,785,642
  51,785,643
  51,785,964
  51,786,577
  51,786,656
  51,789,131
  51,789,512
  51,789,655
  51,789,675
  51,790,778
  51,790,880
  51,790,904
  51,791,618
  51,791,864
  51,792,058
  51,792,249
  51,792,424
  51,792,762
  51,792,880
  51,793,458
  51,793,743
  51,794,199
  51,794,370
  51,794,487
  51,794,506
  51,794,746
  51,795,439
  51,795,483
  51,795,821
  51,795,978
  51,796,248
  51,796,369
  51,796,538
  51,796,600
  51,796,617
  51,796,719
  51,796,884
  51,797,016
  51,797,401
  51,797,620
  51,798,022
  51,798,580
  51,798,598
  51,798,738
  51,798,779
  51,799,099
  51,799,294
  51,799,309
  51,799,657
  51,799,676
  51,800,036
  51,800,484
  51,800,528
  51,800,594
  51,801,071
  51,801,240
  51,801,302
  51,801,334
  51,801,994
  51,802,542
  51,802,863
  51,802,989
  51,803,054
  51,803,063
  51,803,136
  51,803,313
  51,803,958
  51,804,012
  51,804,349
  51,804,708
  51,804,864
  51,804,973
  51,805,041
  51,805,245
  51,805,316
  51,805,492
  51,805,498
  51,807,318
  51,807,553
  51,807,579
  51,808,016
  51,808,414
  51,809,225
  51,809,334
  51,809,393
  51,809,804
  51,810,286
  51,810,454
  51,810,691
  51,810,896
  51,811,343
  51,811,729
  51,812,752
  51,813,129
  51,813,611
  51,813,698
  51,814,051
  51,814,107
  51,814,108
  51,814,221
  51,814,563
  51,814,749
  51,815,147
  51,815,148
  51,815,162
  51,815,217
  51,815,271
  51,816,812
  51,816,878
  51,817,612
  51,817,962
  51,818,140
  51,818,312
  51,819,029
A
C
C
T
A
C
C
C
A
A
T
C
C
G
T
G
T
G
C
T
T
C/G
C
A
C
T/G
T
T
T
G
C
C
C
T
C
G
C
A
T/C
A/T
C
C
G
C
T
T
T
C
T
G
A
G
T
A
T
G
A
T
T
C
T
A
C
A
C/T
T
A
C
T
T
C
C
A
C
T
T
A
G
T/C
C
G
A
T
T
C
T/A
T/C
A
T
T
C
A
T/G
G
T
T
G
C
C
T
C/T
A
C
G
T
C
C
T
C
C
T
T
A
G
T
A
C
A
C
A
A
A
T
G
T
C
A
T
C
G
A
C/T
A
C
C
C
A
T
C
T
A
T
C
T/G
C
G
T
C
T
A
G
G
T
G
T
A
A
G
T
A
G
T
A
A
T
G
C
A
A
T
T
A
G/A
T
T
A
T
G
T/C
C
T
G
A
A
T
A
T
G
T/C
C
T
C
C
T
T
A
G
T
T
G
A
T
A/C
A
T
A
A
T/C
T
C
G
T
T
A
C
A
A
G
C/T
A
C
C
T
A
C
T
C
C
A
G
A
C
G
C
A
C
T
C
C
A
T
G
A
C