Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 118,304 (bp)   Positions: 257
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
HXB4/IpcvMcwi (2020) 
.002
.793
.473
.004
.002
.995
1.0
.988
.008
.001
.019
.034
.03
.0
.017
.006
.012
.051
.152
.086
.035
.007
.996
.0
.0
.0
.003
.0
.002
.0
.001
.0
.041
.053
.002
.004
.005
.215
.333
.706
.005
.0
.0
.008
.008
.001
.005
.012
.977
.537
.0
.002
.97
.0
.0
.001
.423
.018
.719
.998
.525
.133
.001
.012
.0
.028
.005
.029
.017
.004
.0
.014
.002
.002
.001
.001
.0
.235
.005
.064
.096
.042
--
.007
.0
.002
.01
.008
.059
.03
.071
.012
--
--
--
--
.0
.0
.018
.001
.002
.013
.051
.093
.086
.06
.034
.019
.001
.01
.001
.002
.947
.976
.002
.001
.001
.0
.004
.0
.005
.144
.001
.007
.005
.059
.03
.071
.012
.008
.007
.073
.005
.004
.132
.011
.014
.014
.0
.736
.118
.001
.001
.002
.005
.001
.0
.014
.068
.003
.007
.008
.003
.004
.287
.149
.0
.011
.003
.006
.003
.002
.001
.002
.749
.02
.475
.498
.482
.443
.001
.037
.036
.006
.0
.0
.703
.635
.004
.002
.0
.0
.107
.0
.044
.03
.004
.005
.233
.236
.212
.032
.069
.596
.004
.174
.024
.005
.176
.085
.049
.023
.025
--
.021
.05
.018
.001
.014
--
.033
.358
.013
.058
.009
.021
.015
.014
.02
--
--
--
.173
.042
.001
.249
.006
.0
.027
.0
.0
.007
.001
.001
.0
.0
.026
.146
.023
.001
.03
.0
.22
.005
.028
.005
.024
.012
.002
.0
.072
.0
.0
.001
.0
.0
.943
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108351811
LOC108351811
LOC108351811
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
Scn10a
G
C
A
C
A
C
A
T
C
A
2
16
A
C
G
G
C
T
A
C
A
G
-
C
G
-
A
G
A
T
C
T
A
A
A
C
C
C
T
-
-
A
A
C
G
C
C
G
A
G
G
C
A
C
T
C
A
C
-
-
A
C
C
G
A
C
G
C
C
T
T
G
38
T
A
C
G
-
A
A
-
G
A
T
A
A
T
A
T
A
G
T
G
T
C
-
G
T
G
-
C
G
G
G
C
-
-
T
G
-
-
G
T
T
C
G
G
C
T
A
-
G
-
3
C
T
A
G
T
G
-
G
A
T
C
T
A
T
T
T
A
T
T
T
G
C
T
T
G
A
T
T
2
G
C
A
T
-
C
T
A
C
C
T
T
2
C
2
T
T
C
T
T
C
G
-
2
4
G
C
A
A
C
C
T
T
G
G
C
G
T
A
C
2
T
-
C
C
-
G
A
T
A
3
G
T
A
-
A
-
G
A
C
A
T
G
T
C
C
C
C
C
9
-
A
C
G
G
T
C
-
A
A
A
-
T
-
A
C
A
G
T
C
-
2
2
G
T
G
G
C
G
A
A
-
A
A
  128,298,682
  128,298,977
  128,299,119
  128,299,211
  128,299,212
  128,299,713
  128,299,767
  128,300,175
  128,300,686
  128,301,197
  128,301,211
  128,301,254
  128,301,487
  128,301,563
  128,303,440
  128,304,293
  128,304,709
  128,305,284
  128,305,335
  128,305,403
  128,306,011
  128,306,056
  128,306,844
  128,307,251
  128,308,196
  128,308,493
  128,308,838
  128,308,890
  128,308,929
  128,308,943
  128,309,189
  128,309,207
  128,309,377
  128,310,154
  128,310,616
  128,310,622
  128,310,901
  128,311,363
  128,311,796
  128,311,843
  128,311,884
  128,312,312
  128,312,429
  128,312,971
  128,313,229
  128,314,100
  128,314,302
  128,315,192
  128,315,588
  128,315,922
  128,317,187
  128,317,272
  128,317,415
  128,317,925
  128,317,992
  128,318,198
  128,318,600
  128,318,610
  128,318,642
  128,318,675
  128,318,713
  128,318,812
  128,319,012
  128,319,114
  128,319,305
  128,319,352
  128,319,726
  128,319,928
  128,320,249
  128,322,556
  128,323,942
  128,323,969
  128,324,564
  128,325,277
  128,325,287
  128,325,713
  128,325,933
  128,326,094
  128,327,525
  128,328,206
  128,329,882
  128,330,499
  128,331,331
  128,331,456
  128,331,640
  128,332,026
  128,332,660
  128,332,783
  128,338,330
  128,338,336
  128,338,409
  128,338,512
  128,339,462
  128,339,506
  128,339,543
  128,339,557
  128,340,823
  128,340,824
  128,340,835
  128,340,844
  128,340,847
  128,340,852
  128,340,855
  128,340,864
  128,340,867
  128,340,885
  128,340,888
  128,340,890
  128,340,911
  128,340,919
  128,340,946
  128,340,949
  128,341,448
  128,341,452
  128,342,254
  128,343,976
  128,344,026
  128,345,744
  128,345,934
  128,345,964
  128,346,013
  128,346,213
  128,346,644
  128,346,802
  128,346,806
  128,346,873
  128,346,879
  128,346,952
  128,347,055
  128,347,409
  128,347,708
  128,348,954
  128,350,343
  128,350,612
  128,351,377
  128,351,791
  128,351,938
  128,352,329
  128,352,755
  128,352,976
  128,353,002
  128,353,541
  128,353,797
  128,354,222
  128,354,251
  128,354,259
  128,354,508
  128,355,332
  128,355,342
  128,355,646
  128,356,392
  128,356,740
  128,357,388
  128,358,285
  128,358,533
  128,359,119
  128,359,398
  128,359,890
  128,359,942
  128,360,292
  128,361,073
  128,362,177
  128,362,189
  128,362,462
  128,364,332
  128,364,461
  128,364,493
  128,364,502
  128,364,514
  128,364,516
  128,365,000
  128,365,159
  128,365,173
  128,365,747
  128,365,865
  128,366,273
  128,366,785
  128,366,792
  128,367,547
  128,367,951
  128,368,018
  128,368,605
  128,368,713
  128,370,191
  128,370,299
  128,370,765
  128,371,163
  128,371,859
  128,372,430
  128,372,435
  128,372,489
  128,372,611
  128,373,579
  128,374,550
  128,375,222
  128,376,121
  128,376,208
  128,377,576
  128,378,576
  128,378,964
  128,379,885
  128,380,392
  128,381,295
  128,382,032
  128,389,488
  128,389,712
  128,389,916
  128,391,199
  128,391,206
  128,392,196
  128,393,202
  128,395,291
  128,396,333
  128,397,598
  128,397,618
  128,399,378
  128,399,539
  128,399,964
  128,399,994
  128,400,735
  128,400,739
  128,400,743
  128,402,040
  128,402,321
  128,403,267
  128,403,624
  128,403,960
  128,404,264
  128,404,305
  128,404,358
  128,404,360
  128,404,409
  128,404,600
  128,404,606
  128,404,740
  128,405,811
  128,406,543
  128,406,668
  128,407,591
  128,407,664
  128,407,786
  128,408,095
  128,409,221
  128,409,646
  128,409,751
  128,410,068
  128,410,180
  128,410,209
  128,411,105
  128,412,775
  128,413,737
  128,413,836
  128,413,969
  128,414,268
  128,414,399
  128,416,276
  128,416,787
A
T
G
T
G
T
G
C
G
G
-
-
G
T
T
A
T
C
G
A
T
A
2
T
A
7
C
A
G
C
T
C
G
G
G
G
T
T
C
C
44
G
G
T
T
T
T
-
G
C
T
T
T
T
C
T
G
T
T
3
-
T
T
A
G
T
A
A
T
C
G
A
38/-
C
G
T
A
2
G
G
C
A
-
C
G
G
C
G
C
G
A
C
-
-
-
C
T
G
-
T
-
T
-
-
G
A
G
-
-
A
G
-
C
A
T
T
T
-
C
G
5
A
12
-
-
C
G
A
C
C
2
T
G
C
T
C
C
-
C
T/C
A/C
C
C
G
A
T
G
C
T
G
C
C
-
A
G/3
G
C
3
T
C
G
T
T
C
T/-
-
T
-
A
A
T
C
C
T
C
A
-
4/-
A
A
C
G
T
T
C
C
A
-
T
A
C
G
G
2/-
-
3
T
A
3
A
T
G
C
-
A
C
G
C
C
2
T
G
T
C
G
A
C
T
A
T
T
T
-
G
G
T
A
C
C
G
4
G
G
G
3
A
2
G
T
G
C
C
T
A
-
-
T
A
A
A
T
A
G
G
8
G
G