Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 109,310 (bp)   Positions: 261
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
SBN/Ygl (RGD) 
.0
.002
.008
.065
.012
.074
.026
.001
.04
.154
.044
.0
.137
.0
.001
.0
.041
.003
.0
.001
.003
.001
.0
.0
.0
.001
--
.001
.517
.05
.052
.683
.14
.232
.042
.02
.011
.022
.052
.014
.001
.002
.001
.004
.0
.001
.0
.0
.0
.007
.001
.0
.001
.0
.164
.625
.07
.013
.016
.205
.007
.011
.01
.001
.006
.0
.001
.002
.002
.002
.001
.002
.682
--
.017
.053
.426
.358
.001
.001
.007
.048
.044
.286
.36
.0
.002
.027
.0
.0
.046
.118
.069
.002
.895
.14
.041
.052
.001
.042
.113
.087
.165
.001
.002
.027
.0
.002
.143
.005
.004
.0
.0
.001
.0
.101
.004
.003
.001
.0
.0
.001
.002
.001
.002
.001
.0
.0
.0
.022
.0
.002
.063
.0
.043
.005
.0
.0
.001
.031
.0
.041
.008
.17
.977
.379
.001
.001
.0
.0
.001
.0
.0
.008
.0
.003
.0
.0
.003
.057
.159
.14
.127
.043
.001
.002
.002
.001
.004
.004
.0
.003
.0
.01
.006
.001
.008
.02
.0
.001
.003
.01
.001
.003
.002
.402
.102
.0
.021
.004
.0
.008
.0
.0
.0
.006
.006
.002
.001
.0
.0
.007
.001
.001
.0
.0
.004
.001
.001
.027
.048
.0
.113
.045
.006
.023
.006
.0
.009
.004
.0
.0
.0
.019
.006
.001
.004
.005
.0
.001
.0
.0
.005
.05
.0
.022
.0
.002
.005
.003
.003
.004
.002
.012
.006
.573
.0
.0
.0
.001
.0
.0
.002
.001
.0
.01
.012
.001
.047
.0
.001
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
Rab11fip4
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
G
C
G
A
C
T
C
A
C
C
A
C
A
A
A
G
G
C
A
G
C
A
A
C
G
G
C
T
C
A
G
T
G
C
T
T
T
C
T
T
T
G
A
C
G
G
C
G
A
T
C
G
T
A
G
C
A
A
T
T
G
G
T
C
G
G
A
C
T
T
T
A
C
C
G
C
T
G
G
G
T
A
C
A
C
G
A
T
G
A
T
T
T
A
T
A
G
T
C
T
G
G
T
G
A
C
T
G
A
G
G
A
A
T
T
T
G
T
T
G
T
C
C
C
A
C
A
T
G
C
C
A
G
G
T
A
G
C
T
A
T
T
T
C
C
C
G
T
G
G
C
C
T
G
G
G
T
G
A
T
A
G
G
T
G
G
A
G
A
C
A
C
G
C
A
G
C
T
T
C
G
C
A
G
T
A
G
G
G
T
A
A
C
T
A
G
A
A
A
G
A
C
G
A
A
A
C
A
A
G
C
A
G
A
C
G
A
A
T
T
A
T
G
T
C
G
T
A
C
A
C
G
G
C
T
A
T
T
C
G
A
A
G
C
C
C
G
G
C
G
G
C
T
A
G
T
C
A
A
G
  66,943,490
  66,945,405
  66,946,651
  66,947,147
  66,948,021
  66,948,569
  66,949,167
  66,949,350
  66,950,314
  66,950,879
  66,950,938
  66,951,791
  66,951,809
  66,954,578
  66,955,829
  66,956,399
  66,957,883
  66,958,710
  66,959,473
  66,960,070
  66,961,814
  66,965,241
  66,965,499
  66,965,508
  66,965,858
  66,965,871
  66,966,655
  66,969,949
  66,970,733
  66,970,914
  66,970,915
  66,971,012
  66,971,660
  66,971,677
  66,973,446
  66,974,154
  66,974,186
  66,974,202
  66,974,391
  66,974,641
  66,974,982
  66,975,031
  66,975,289
  66,975,444
  66,975,761
  66,975,859
  66,975,888
  66,976,362
  66,976,701
  66,976,750
  66,977,308
  66,977,354
  66,977,401
  66,977,475
  66,978,011
  66,978,331
  66,978,762
  66,978,992
  66,979,073
  66,979,139
  66,979,229
  66,979,331
  66,979,902
  66,980,104
  66,980,549
  66,980,711
  66,980,767
  66,980,794
  66,980,797
  66,980,817
  66,980,868
  66,983,228
  66,983,495
  66,984,011
  66,984,475
  66,984,549
  66,984,776
  66,985,632
  66,985,834
  66,985,885
  66,986,155
  66,986,415
  66,986,424
  66,986,504
  66,986,575
  66,987,543
  66,988,034
  66,988,235
  66,989,131
  66,989,404
  66,990,606
  66,990,656
  66,990,696
  66,991,579
  66,992,046
  66,992,099
  66,992,201
  66,992,483
  66,992,503
  66,992,529
  66,993,040
  66,993,328
  66,993,339
  66,993,422
  66,993,430
  66,993,442
  66,993,465
  66,993,612
  66,993,705
  66,993,748
  66,994,177
  66,994,192
  66,994,347
  66,994,417
  66,994,450
  66,994,487
  66,994,604
  66,994,612
  66,994,834
  66,994,903
  66,994,923
  66,994,935
  66,994,985
  66,995,067
  66,995,069
  66,995,089
  66,995,199
  66,996,200
  66,996,204
  66,996,661
  66,996,674
  66,996,676
  66,997,084
  66,997,135
  66,997,196
  66,997,299
  66,997,374
  66,997,386
  66,997,714
  66,997,755
  66,997,760
  66,999,045
  66,999,470
  67,000,156
  67,000,168
  67,000,453
  67,000,524
  67,000,548
  67,000,620
  67,000,761
  67,000,778
  67,000,801
  67,000,816
  67,000,949
  67,001,028
  67,001,055
  67,001,320
  67,001,394
  67,001,594
  67,001,753
  67,001,767
  67,001,777
  67,001,778
  67,001,784
  67,001,961
  67,001,962
  67,002,233
  67,002,558
  67,002,633
  67,002,740
  67,002,779
  67,003,261
  67,003,633
  67,005,688
  67,005,820
  67,006,010
  67,006,100
  67,006,330
  67,006,835
  67,007,342
  67,007,458
  67,009,060
  67,009,488
  67,009,926
  67,010,018
  67,010,588
  67,011,245
  67,011,605
  67,011,720
  67,014,237
  67,015,260
  67,015,645
  67,017,293
  67,017,390
  67,017,525
  67,017,582
  67,017,702
  67,018,005
  67,018,016
  67,019,266
  67,019,336
  67,019,450
  67,019,632
  67,020,096
  67,020,107
  67,020,225
  67,020,437
  67,020,955
  67,021,127
  67,021,629
  67,021,890
  67,022,237
  67,024,639
  67,025,355
  67,025,407
  67,027,239
  67,027,600
  67,027,651
  67,027,772
  67,028,691
  67,028,928
  67,029,045
  67,029,726
  67,030,410
  67,032,127
  67,033,292
  67,033,941
  67,036,832
  67,037,152
  67,037,921
  67,037,927
  67,038,776
  67,039,174
  67,040,243
  67,040,925
  67,041,685
  67,041,901
  67,041,915
  67,041,931
  67,042,981
  67,043,749
  67,043,801
  67,044,002
  67,044,501
  67,044,889
  67,046,014
  67,046,322
  67,046,438
  67,047,770
  67,047,977
  67,048,187
  67,048,255
  67,048,614
  67,048,750
  67,049,520
  67,049,802
  67,049,816
  67,050,170
  67,050,508
  67,051,055
  67,051,313
A
A
T
A
G
T
C
T
T
T
T
T
T
G
G
G
A
A
A
C
A
T
T
G
T
T
A
T
C
A
C
A
C
A
T
G
C
C
T
A
G
A
A
C
T
T
C
G
T
C
A
A
T
C
G
A
T
T
G
C
C
T
A
C
T
A
A
C
T
C
C
C
G
T
T
A
T
C
A
A
A
C
G
T
C
T
A
G
C
A
G
C
C
C
G
C
G
A
G
G
C
A
A
G
A
G
T
C
A
G
A
A
G
C
G
G
C
A
A
C
A
C
T
T
T
G
T
G
G
T
T
A
C
A
A
C
G
C
T
C
G
A
C
A
T
G
T
T
C
A
A
T
T
C
A
A
A
C
A
G
C
C
A
A
C
A
A
C
T
C
G
C
T
A
A
G
A
T
C
G
T
C
T
T
A
C
G
A
T
A
C
T
G
T
G
G
C
G
G
G
A
G
T
A
G
G
G
T
G
G
T
T
G
A
T
T
A
G
G
C
C
T
C
A
C
T
C
C
G
T
G
T
C
T
T
C
G
C
C
T
A
G
T
A
A
A
T
A
A
T
A
A
T
G
C
A
A
T
G
G
A