Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 142,053 (bp)   Positions: 296
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
LN/MavRrrcAek (2020) 
.0
.0
.002
.171
.0
.025
.974
.001
.01
.024
.112
.015
.0
.001
.008
.634
.032
.021
.046
.091
--
--
.003
.007
.001
.024
.925
.001
.003
.001
.01
.001
.012
.03
.001
--
--
.208
.007
.0
.0
.009
.031
.004
.015
.049
.058
.092
.025
.02
.036
.026
.079
.023
.014
.013
.539
.001
.0
.112
.06
.223
.224
.018
.007
.004
.005
.0
.011
.061
.027
.016
.011
.037
.006
.133
.347
.343
.171
.117
.0
.001
.033
.032
.039
.02
.006
.048
.023
.009
.006
.002
.005
.0
.0
.002
.016
.02
.036
.176
.168
.145
.131
.168
.185
.261
.143
.105
.107
.096
.059
.041
.168
.257
.179
.148
.001
.006
.013
.053
.008
.007
.046
.003
.004
.002
.0
.001
.004
.0
.009
.001
.018
.0
.001
.004
.022
.033
.002
--
--
--
--
--
.021
.049
.001
.0
.001
.0
.116
.002
.003
.036
.0
.017
.0
.019
.001
.002
.323
.01
.001
.001
.0
.0
.321
.79
.0
.078
.005
.004
.249
.888
.131
1.0
.972
.997
1.0
.999
.997
1.0
.625
.537
.125
.205
1.0
1.0
1.0
1.0
1.0
.999
.696
.759
.927
.498
.962
1.0
1.0
.888
.662
.774
.988
1.0
1.0
1.0
1.0
.9
1.0
.995
.006
.001
.117
.134
.151
.021
.0
.0
.017
.07
.032
.002
1.0
.001
.347
.068
.002
.048
.005
.005
.047
.003
.0
.0
.008
.109
.104
.002
.886
.989
.037
.001
.002
.163
.008
.003
.035
.266
.0
.003
.002
.011
.0
--
.016
.056
.005
.009
.124
.0
.044
.062
.058
1.0
1.0
1.0
1.0
.973
.009
.008
.031
.013
.0
.385
.18
.573
.005
.831
.0
.003
.0
.004
.01
.073
.007
.785
.0
.04
.003
.002
.247
.99
.159
.772
.778
.771
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
Pou2f1
-
C
G
T
C
C
A
G
-
A
A
A
T
C
-
-
C
G
A
6
18
C
C
-
T
G
G
-
-
-
A
C
C
G
C
T
A
G
A
-
A
-
C
G
C
-
-
-
-
A
T
C
A
-
T
A
G
T
A
C
A
-
-
C
A
G
A
T
-
-
G
2
-
3
G
-
C
2
-
A
2
2
T
A
T
T
T
G
-
A
T
A
2
A
-
G
T
A
T
A
C
-
C
G
7
-
T
G
C
C
-
A
-
-
-
2
T
T
A
A
G
A
6
T
G
T
G
T
G
C
T
G
G
C
G
-
G
C
G
C
C
3
4
C
-
-
-
T
C
T
T
C
T
G
C
C
G
C
A
G
C
3
A
G
T
G
-
-
G
T
A
T
A
C
G
G
A
G
-
T
T
T
-
-
A
26
G
T
C
A
A
T
-
T
G
-
-
G
T
2
-
A
C
-
G
-
-
-
G
A
C
-
C
G
A
-
G
G
-
-
C
A
T
T
C
-
T
-
G
T
G
T
C
T
A
C
A
A
A
C
-
A
A
G
C
T
T
A
A
G
G
A
A
G
T
A
-
A
107
A
G
G
G
T
-
C
2
A
-
-
2
2
A
-
-
-
-
-
-
-
-
-
G
T
-
2
-
G
C
-
-
-
-
G
C
-
  84,075,389
  84,076,742
  84,076,910
  84,077,524
  84,079,669
  84,079,836
  84,082,872
  84,084,431
  84,084,519
  84,086,005
  84,087,851
  84,088,260
  84,091,572
  84,092,166
  84,092,438
  84,092,635
  84,092,707
  84,093,663
  84,093,739
  84,094,389
  84,094,454
  84,095,782
  84,097,087
  84,098,655
  84,100,482
  84,101,290
  84,101,724
  84,102,403
  84,103,027
  84,103,041
  84,103,956
  84,104,177
  84,104,391
  84,104,519
  84,106,980
  84,107,625
  84,108,225
  84,110,010
  84,110,400
  84,110,824
  84,111,418
  84,112,680
  84,112,683
  84,114,814
  84,115,014
  84,115,027
  84,115,029
  84,115,048
  84,115,081
  84,115,085
  84,115,097
  84,115,572
  84,117,239
  84,117,730
  84,119,776
  84,119,777
  84,121,695
  84,124,482
  84,126,664
  84,128,489
  84,128,499
  84,129,882
  84,129,884
  84,130,180
  84,130,185
  84,130,186
  84,130,197
  84,130,215
  84,130,230
  84,130,234
  84,130,243
  84,130,246
  84,130,257
  84,130,281
  84,130,299
  84,130,313
  84,130,324
  84,130,327
  84,130,338
  84,130,341
  84,130,352
  84,130,357
  84,130,416
  84,130,417
  84,130,420
  84,130,425
  84,130,431
  84,130,438
  84,130,455
  84,130,475
  84,130,476
  84,130,484
  84,130,489
  84,130,504
  84,130,506
  84,130,510
  84,130,525
  84,130,530
  84,130,560
  84,130,579
  84,130,599
  84,130,602
  84,130,609
  84,130,613
  84,130,615
  84,130,627
  84,130,638
  84,130,646
  84,130,653
  84,130,659
  84,130,666
  84,130,694
  84,132,498
  84,132,505
  84,132,522
  84,132,526
  84,132,546
  84,132,555
  84,132,557
  84,132,563
  84,132,595
  84,132,596
  84,132,605
  84,132,881
  84,133,002
  84,133,089
  84,134,506
  84,134,563
  84,134,572
  84,134,583
  84,134,587
  84,134,590
  84,134,595
  84,134,613
  84,134,736
  84,138,054
  84,138,457
  84,138,732
  84,138,784
  84,139,672
  84,139,710
  84,139,741
  84,139,748
  84,140,519
  84,141,184
  84,141,191
  84,141,373
  84,141,677
  84,142,037
  84,143,294
  84,144,070
  84,144,647
  84,145,391
  84,146,036
  84,149,510
  84,150,000
  84,150,322
  84,153,755
  84,153,995
  84,155,444
  84,156,972
  84,157,151
  84,157,159
  84,157,160
  84,157,166
  84,157,167
  84,157,179
  84,157,192
  84,157,292
  84,157,322
  84,157,341
  84,157,357
  84,157,426
  84,157,446
  84,157,540
  84,157,575
  84,157,614
  84,157,619
  84,157,631
  84,157,666
  84,157,681
  84,157,735
  84,157,748
  84,157,752
  84,157,764
  84,157,784
  84,157,862
  84,157,869
  84,157,870
  84,157,889
  84,157,934
  84,158,142
  84,158,182
  84,158,189
  84,158,198
  84,158,202
  84,158,212
  84,158,262
  84,158,280
  84,158,309
  84,158,343
  84,158,347
  84,158,361
  84,158,399
  84,158,409
  84,158,417
  84,158,421
  84,158,484
  84,158,498
  84,159,842
  84,163,817
  84,164,999
  84,165,809
  84,166,637
  84,167,431
  84,167,598
  84,168,151
  84,170,549
  84,175,255
  84,175,443
  84,175,796
  84,178,188
  84,179,692
  84,181,514
  84,182,400
  84,182,745
  84,183,045
  84,185,072
  84,185,134
  84,185,474
  84,185,530
  84,186,106
  84,186,372
  84,186,398
  84,186,699
  84,188,847
  84,188,848
  84,189,076
  84,189,615
  84,189,653
  84,190,321
  84,190,959
  84,191,176
  84,192,193
  84,193,093
  84,195,717
  84,196,488
  84,198,366
  84,198,407
  84,198,418
  84,198,439
  84,198,451
  84,198,788
  84,199,884
  84,202,402
  84,207,104
  84,207,182
  84,208,015
  84,209,818
  84,210,055
  84,210,105
  84,213,231
  84,214,825
  84,215,951
  84,215,960
  84,215,972
  84,216,008
  84,216,030
  84,216,038
  84,216,046
  84,216,062
  84,216,067
  84,216,072
  84,216,088
  84,216,109
  84,216,173
  84,216,196
  84,216,211
  84,216,266
  84,216,298
  84,216,364
  84,216,406
  84,216,410
  84,216,418
  84,216,473
  84,216,507
  84,216,546
  84,216,617
  84,216,618
  84,216,626
  84,216,658
  84,216,990
  84,216,997
  84,217,038
  84,217,039
  84,217,051
C
A
C
T/-
T
T
T
C
21
-
A/-
-
C
T
10
A
T
A
C
-
-
A
T
4
C
A
A
C
C
C
G
T
T
A
T
-
G
A
G
G
G
T
T
-
A
3
24
57
T
C
C
T
G
T
A
G
A
C
G
-
-
10
28
-
-
C
-
-
G
G
-
-
G
-
-
T
A
-
A
-
-
-
A
T
-
-
A
-
G
G
A
-
-
G
T
-
-
-
C
-
T
2
-
-
-
C
-
-
T
-
G
-
A
A
C
-
-
-
-
-
A
C
-
C
T
-
-
-
-
A
-
-
A
-
-
T
A
T
A
-
A
-
-
-
G
C
A
C
T
C
-
-
C
T
T
T
A
T
T
C
T
-
G
A
G
A
C
C
-
-
-
-
-
-
C
-
-
-
A
A
-
-
A
A
C
26/-
-
-
G
-
-
-
G
-
-
T
T
-
-
-
C
C
G
T
-
T
C
T
-
G
G
A
G
C
G
16
A
A
A
10
T
-
C
A
T
6
G
2
T
C
A
C
G
C
G
A
G
G
A/-
G
G
G
G
A
G
A
C
C
C
A
A
C
C
-
C
T
5
G
-
G
A
T
A
-
G
-
-
-
G
G
-
-
-
G
C
G
G
G
G
C
G
2
-
-
C
-
C
C
G
G
G
G
G
C
G
C