Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 314,065 (bp)   Positions: 289
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
LL/MavRrrcAek (2020) 
.012
.001
.029
.009
.027
.016
.003
.001
.001
.006
.126
.166
.029
.001
.001
.002
.028
.031
.033
.015
.009
.006
.021
.066
.121
.258
.105
.006
.019
.008
.004
.009
.001
.044
.066
.043
.028
.004
.0
.19
.019
.124
.109
.001
.005
.0
.003
.024
.011
.0
.001
.0
.0
.0
.846
.004
.994
.066
.027
.191
.871
.82
.69
.107
.068
.002
.001
.0
.0
.001
.001
.001
.001
.007
.001
.007
.0
.0
.001
.441
.003
.708
.193
.388
.493
.025
.554
.105
.001
.005
.019
.001
.018
.029
.012
.115
.254
.256
.258
.259
.259
.082
.048
.027
.035
.009
.011
.038
.04
.033
.025
.005
.013
.014
.005
.007
.093
.083
.09
.144
.172
.161
.038
.017
.011
.655
.076
.004
.006
.0
.011
.02
.001
.0
.0
.0
.0
.0
.006
.0
.003
.01
.0
.019
.027
.001
.043
.0
.856
--
--
--
--
--
--
--
.002
.006
.003
.038
.971
.0
.0
.004
.006
--
--
--
--
.061
.005
.007
.0
.002
.0
.065
.024
.027
.004
.0
.0
.002
.003
.0
.0
.001
.002
.002
.001
.001
.074
.056
.001
.007
.002
.002
.003
.002
.008
.001
.004
.031
.062
.097
.173
.418
.001
.001
.0
.0
.001
.006
.003
.0
.003
.001
.016
.121
.177
.012
.003
.021
.02
.062
.096
.161
.233
.045
.027
.029
.363
.024
.003
.001
.001
.014
.007
.065
.097
.086
.003
.002
.001
.001
.03
.037
.044
.009
.136
.003
.002
.005
.003
.003
.002
.197
.042
.0
.0
.002
.006
.001
.005
.03
.126
.022
.006
.004
.009
.012
.001
.216
.001
.047
.004
.02
.0
.0
.0
.89
.555
.079
.001
.0
.006
.0
.993
.336
1.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
Pde7b
T
C
-
T
G
G
T
G
-
G
T
2
2
2
-
A
G
-
-
-
T
C
T
T
G
G
T
G
A
T
A
A
-
A
C
C
A
-
A
C
-
T
A
T
A
-
-
-
G
-
6
C
T
-
C
A
G
-
A
-
G
2
T
T
T
2
G
A
G
-
A
T
C
2
A
A
T
G
-
A
2
A
A
G
A
-
-
C
-
-
A
A
A
A
A
39
C
T
2
2
A
T
T
3
T
2
C
A
C
2
C
G
-
-
G
-
T
G
-
-
-
G
-
T
G
G
A
T
-
-
-
7
-
A
G
-
2
G
-
T
C
G
-
G
T
-
G
2
-
C
C
A
T
G
C
C
T
2
C
C
T
9
T
T
C
-
G
G
T
T
T
G
T
-
-
C
A
C
C
C
C
C
T
G
C
T
G
T
T
2
-
T
C
G
G
C
G
G
-
A
-
C
C
T
C
A
C
T
C
G
C
C
A
A
-
C
2
C
-
-
A
2
T
G
-
A
2
A
G
C
A
T
G
C
A
-
C
C
-
A
C
C
-
5
C
T
2
C
-
-
A
-
C
A
C
-
T
A
-
-
C
-
-
-
C
A
C
-
-
-
C
-
C
T
C
-
A
-
-
-
C
C
-
-
T
2
-
-
A
  15,899,438
  15,904,743
  15,915,288
  15,917,776
  15,917,782
  15,917,785
  15,917,790
  15,917,793
  15,917,811
  15,917,813
  15,917,825
  15,917,827
  15,917,843
  15,917,852
  15,917,855
  15,917,864
  15,917,872
  15,917,883
  15,917,901
  15,917,910
  15,917,922
  15,917,925
  15,917,932
  15,917,938
  15,917,959
  15,917,976
  15,917,979
  15,917,998
  15,918,104
  15,918,115
  15,918,122
  15,918,125
  15,918,141
  15,918,196
  15,918,209
  15,918,217
  15,918,221
  15,918,226
  15,918,229
  15,918,260
  15,918,375
  15,918,388
  15,918,401
  15,918,417
  15,918,422
  15,918,435
  15,918,453
  15,918,496
  15,918,545
  15,918,558
  15,918,573
  15,918,585
  15,918,586
  15,918,611
  15,918,628
  15,918,637
  15,918,649
  15,918,669
  15,918,676
  15,918,694
  15,918,981
  15,918,984
  15,918,993
  15,919,010
  15,919,012
  15,919,015
  15,919,024
  15,919,028
  15,919,029
  15,919,050
  15,919,054
  15,919,065
  15,919,066
  15,919,073
  15,919,084
  15,919,100
  15,919,103
  15,919,104
  15,919,114
  15,919,149
  15,919,214
  15,919,222
  15,919,231
  15,919,243
  15,919,244
  15,919,267
  15,919,288
  15,919,291
  15,919,318
  15,919,325
  15,919,332
  15,919,341
  15,919,346
  15,919,351
  15,919,354
  15,927,597
  15,935,482
  15,935,486
  15,935,491
  15,935,495
  15,935,499
  15,948,442
  15,948,451
  15,956,088
  15,956,098
  15,956,107
  15,956,111
  15,956,118
  15,956,121
  15,956,128
  15,956,131
  15,956,135
  15,956,152
  15,956,153
  15,956,970
  15,956,974
  15,957,005
  15,957,039
  15,957,057
  15,957,063
  15,957,064
  15,958,328
  15,958,426
  15,958,533
  15,958,558
  15,958,613
  15,958,641
  15,958,694
  15,958,707
  15,958,719
  15,958,729
  15,958,765
  15,958,792
  15,958,794
  15,958,795
  15,959,022
  15,959,023
  15,959,026
  15,959,036
  15,959,043
  15,959,071
  15,959,074
  15,959,092
  15,959,098
  15,967,304
  15,967,405
  15,967,418
  15,967,519
  15,967,523
  15,970,653
  15,971,759
  15,971,766
  15,971,799
  15,971,808
  15,982,594
  15,982,643
  15,988,076
  16,016,992
  16,037,338
  16,037,346
  16,091,000
  16,091,619
  16,091,849
  16,091,851
  16,091,855
  16,128,707
  16,128,718
  16,128,725
  16,128,732
  16,129,169
  16,129,554
  16,129,555
  16,131,779
  16,131,919
  16,132,129
  16,132,307
  16,132,318
  16,132,319
  16,137,529
  16,137,534
  16,137,536
  16,137,538
  16,137,539
  16,137,547
  16,137,552
  16,137,593
  16,137,606
  16,137,618
  16,137,625
  16,137,639
  16,137,656
  16,137,661
  16,137,677
  16,137,682
  16,137,687
  16,137,689
  16,137,692
  16,137,707
  16,138,023
  16,138,027
  16,138,044
  16,138,052
  16,138,055
  16,138,057
  16,138,061
  16,138,107
  16,138,111
  16,138,113
  16,138,122
  16,138,136
  16,138,139
  16,138,143
  16,138,148
  16,138,152
  16,138,172
  16,138,221
  16,139,248
  16,139,649
  16,139,672
  16,139,676
  16,139,683
  16,139,714
  16,139,722
  16,139,729
  16,139,747
  16,163,516
  16,163,528
  16,163,538
  16,163,560
  16,163,568
  16,163,603
  16,163,967
  16,164,023
  16,164,027
  16,164,028
  16,164,078
  16,164,143
  16,164,156
  16,164,177
  16,164,183
  16,164,201
  16,164,203
  16,164,207
  16,164,212
  16,164,225
  16,164,231
  16,164,244
  16,164,250
  16,167,260
  16,167,274
  16,167,280
  16,167,293
  16,167,305
  16,167,310
  16,167,311
  16,167,325
  16,167,330
  16,167,343
  16,167,350
  16,167,378
  16,167,384
  16,167,388
  16,167,397
  16,167,410
  16,167,419
  16,167,430
  16,167,435
  16,167,446
  16,167,452
  16,167,459
  16,167,463
  16,176,785
  16,189,537
  16,189,671
  16,198,091
  16,203,145
  16,203,187
  16,203,192
  16,203,228
  16,203,303
  16,203,341
  16,203,345
  16,203,387
  16,203,476
  16,203,676
  16,203,681
  16,203,717
  16,203,725
  16,203,898
A
-
50
-
A
A
G
T
C
-
-
-
-
-
T
-
-
A
A
C
-
-
-
-
-
-
-
-
-
-
-
T
A
-
-
-
-
A
-
-
A
-
-
-
-
A
C
C
-
A
-
T
C
T
-
C
A
2
-
2
-
-
-
-
C
-
C
C
A
C
-
C
T
-
-
-
C
T
T
-
-
-
-
A
G
T
C
-
C
2
-
-
-
-
-
-
-
-
-
-
-
T/C
T/C
-
G
-
G
-
-
-
-
T
A
G
-
C
-
-
T
A
T
-
C
-
-
-
-
-
C
C
C
7/-
G
G
A
2
-
T
A
C
-
-
T
-
-
2
-
-
3
A
C/T
A/C
T/C
G/A
-
A
G
2/-
-
-
C
-
C
C
A
4
-
-
G
-
G
C
-
G
C
-
C
A
-
A
T
T
G
T
-
-
-
-
-
-
T
C
-
-
-
A
T
-
5
G
T
-
-
-
-
C
-
A
-
-
-
-
-
-
C
-
2/-
C/-
-/G
-/C
A/T
2/-
T/-
G/-
-/A
-
-
-
-
-
-
-
-
G
C
G
-
-
G
-
-
-
T/T
-
-
-
-
-
C
A
-
A
-
T
A
T
C
-
A
A
A
T
A
A
A
-
-
A
2
A
-
6
A
G
-
2
-
C
C
A
-
-
G
G
-
-
A
G
-