Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 190,582 (bp)   Positions: 240
Conservation 
Genes ( + ) 
Genes ( - ) 
Genes ( - ) 
Rnor 6.0  
BN-Lx/CubMcwi (2019) 
.038
.016
.021
.012
.002
.001
.024
.004
.001
.055
.001
.036
.012
.011
.01
.012
.011
.008
.005
.004
.027
.027
.003
.006
.001
.001
.0
.002
.002
.0
.003
.006
.004
.008
.088
.058
.037
.003
--
--
.193
.191
.178
.16
.125
.089
.035
.034
.03
--
.019
.02
.003
.009
.013
.01
.012
.038
.006
.006
.014
.159
.053
.002
.025
.0
.013
.101
.003
.002
.058
1.0
.995
1.0
.885
1.0
.998
1.0
1.0
1.0
.992
.991
.958
.007
.006
.006
.0
.0
.0
.003
.003
.0
.005
.01
.001
.054
.015
.002
.071
--
.073
.091
--
.016
.035
.075
.045
.043
.055
.031
.055
.01
.078
.08
.073
.06
.044
.085
.065
.006
.005
.021
.001
.001
.005
.006
.012
.016
.005
.006
.002
.002
.005
.014
.007
.003
.001
.018
.056
.905
.001
.001
.002
.003
.008
.002
.042
.007
.001
.005
.0
.004
.0
.001
.007
.0
.002
.0
.02
.009
.0
.017
.0
.001
.001
.002
.081
.005
.009
.003
.002
.001
.001
.001
.0
.028
.02
.0
.0
.083
.0
.054
.389
.099
.008
.003
.004
.001
.004
.0
.038
.007
.0
.0
.001
.001
.0
.0
.006
.004
.059
.101
.693
.994
.845
.001
.0
.0
.001
.391
.003
.0
.0
.0
.3
.596
.2
.058
.002
.019
.033
.144
.0
.004
.004
.0
.001
.001
.006
.001
.0
.0
.0
.0
.0
.06
.0
.005
.011
.025
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
Nos1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
-
-
-
-
-
C
G
-
-
T
-
-
C
-
-
-
-
T
T
A
A
-
T
A
-
-
-
T
C
-
-
G
C
-
T
T
-
-
A
-
3
2
A
2
C
A
A
A
-
-
T
T
A
C
3
T
-
C
-
2
-
4
G
-
-
G
4
-
-
4
G
G
G
2
A
C
-
-
-
G
G
-
G
A
-
A
G
C
2
-
T
G
-
-
-
-
-
-
-
-
-
T
-
4
T
T
-
-
T
G
G
G
2
-
C
T
G
-
G
C
-
G
G
-
C
C
T
C
C
-
G
C
A
-
C
C
-
A
T
C
-
-
A
G
-
T
C
C
-
A
C
G
C
C
C
-
A
T
T
G
T
T
T
-
-
G
G
A
-
A
C
2
G
A
2
G
T
G
G
-
2
C
A
G
-
-
-
-
-
-
G
T
T
T
A
-
-
-
G
-
A
C
-
-
T
-
C
C
-
-
A
T
T
-
-
-
-
-
T
C
-
2
C
G
T
C
T
A
-
-
-
T
T
-
C
-
C
-
-
  44,217,188
  44,217,192
  44,220,602
  44,220,650
  44,220,666
  44,220,676
  44,220,689
  44,220,785
  44,220,796
  44,221,019
  44,221,102
  44,221,107
  44,222,541
  44,222,733
  44,222,750
  44,222,762
  44,222,763
  44,222,766
  44,222,769
  44,222,770
  44,224,412
  44,224,414
  44,224,425
  44,224,428
  44,224,434
  44,224,437
  44,224,440
  44,224,513
  44,224,523
  44,224,542
  44,229,386
  44,229,387
  44,229,409
  44,229,410
  44,229,422
  44,229,436
  44,229,442
  44,229,458
  44,229,463
  44,229,472
  44,229,612
  44,229,615
  44,229,624
  44,229,631
  44,229,639
  44,229,647
  44,229,655
  44,229,656
  44,229,658
  44,234,997
  44,235,427
  44,235,464
  44,235,472
  44,235,474
  44,235,490
  44,235,513
  44,235,521
  44,235,527
  44,235,535
  44,235,546
  44,235,551
  44,235,993
  44,236,001
  44,236,009
  44,263,697
  44,277,709
  44,277,713
  44,277,718
  44,277,742
  44,277,827
  44,277,842
  44,277,873
  44,277,876
  44,277,884
  44,277,888
  44,277,912
  44,277,914
  44,277,950
  44,277,958
  44,277,980
  44,277,991
  44,278,008
  44,278,019
  44,278,038
  44,278,039
  44,278,043
  44,278,053
  44,278,067
  44,278,068
  44,278,084
  44,278,090
  44,278,106
  44,278,123
  44,278,139
  44,278,151
  44,278,162
  44,278,169
  44,278,196
  44,278,212
  44,280,280
  44,282,183
  44,282,184
  44,287,942
  44,288,327
  44,291,966
  44,291,971
  44,292,017
  44,292,020
  44,292,024
  44,292,053
  44,292,062
  44,292,072
  44,292,098
  44,292,101
  44,292,110
  44,292,115
  44,292,119
  44,292,127
  44,292,138
  44,292,146
  44,292,147
  44,292,158
  44,292,164
  44,292,167
  44,292,172
  44,292,174
  44,292,179
  44,292,194
  44,292,213
  44,292,217
  44,292,226
  44,292,230
  44,292,232
  44,292,239
  44,292,242
  44,292,248
  44,292,258
  44,292,268
  44,292,276
  44,293,117
  44,293,863
  44,293,875
  44,293,882
  44,293,896
  44,293,900
  44,293,904
  44,293,913
  44,293,919
  44,293,935
  44,293,942
  44,293,963
  44,293,969
  44,293,999
  44,294,000
  44,294,024
  44,294,032
  44,294,045
  44,294,048
  44,294,512
  44,294,518
  44,294,520
  44,294,539
  44,294,543
  44,294,566
  44,294,568
  44,294,574
  44,294,605
  44,323,280
  44,323,309
  44,323,339
  44,323,383
  44,323,385
  44,323,391
  44,323,399
  44,323,402
  44,323,409
  44,323,432
  44,323,457
  44,323,460
  44,323,493
  44,323,518
  44,323,537
  44,323,565
  44,323,577
  44,323,593
  44,323,604
  44,328,901
  44,328,904
  44,328,916
  44,341,202
  44,346,104
  44,347,068
  44,347,096
  44,347,097
  44,347,102
  44,347,323
  44,347,327
  44,347,329
  44,347,388
  44,347,409
  44,347,427
  44,382,931
  44,382,939
  44,382,945
  44,382,952
  44,382,972
  44,382,976
  44,382,980
  44,382,981
  44,382,990
  44,383,000
  44,383,005
  44,383,016
  44,383,018
  44,383,036
  44,383,042
  44,383,047
  44,383,068
  44,383,100
  44,383,105
  44,383,113
  44,383,116
  44,383,119
  44,383,123
  44,383,131
  44,383,141
  44,383,143
  44,383,150
  44,383,155
  44,383,181
  44,383,185
  44,383,190
  44,383,194
  44,383,215
  44,383,238
  44,383,244
  44,383,264
  44,389,480
  44,391,038
  44,391,044
T
96
23
T
A
C
-
-
C
C
-
C
C
-
24
2
G
9
C
C
-
-
C
C
-
C
C
C
-
-
G
2
C
T
G
-
-
C
C
T
5
-
-
-
-
-
-
T
-
A
C
-
-
-
A
-
-
2
-
G
-
2
-
T
T
A
-
-
A
C
-
A
C
-
-
-
-
A
A
C
-
-
C
A
C
A
-
C
A
-
3
-
-
A
A
C
A
A
C
6
A
4
C
C
-
G
-
G
T
G
-
-
-
-
T
-
-
-
G
T
G
A
-
T
A
G
A
-
-
-
T
A
G
-
3
-
G
G
-
C
-
T
T
-
-
A
-
-
-
C
-
-
C
G
-
-
C
C
-
-
-
-
-
C
T
C
-
-
G
G
C
-
-
A
T
-
-
G
T
-
A
-
-
-
-
T
G
T
A
2
6
-
A
A
A
-
4
G
2
-
15
-
-
G
G
-
G
G
G
G/G
G
G
-
G
G
A
A
G
G
-
-
2
-
G
-
-
-
-
C
G
G
C
-
-
C
-
G
-
G
T