Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 783,358 (bp)   Positions: 532
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
.998
.992
1.0
.871
.008
.012
.165
.227
.001
.001
.001
.001
.001
.001
.002
.001
.0
.0
.001
.002
.004
.013
.003
.004
.005
.004
.002
.002
.001
.001
.001
.001
.001
.0
.001
.002
.006
.007
.011
.014
.011
--
.002
.006
.001
.92
.002
.002
.001
.007
.005
.021
.001
.259
.076
.047
.027
.032
.024
.012
.007
.037
.058
.05
.008
.015
.009
.01
.125
.029
.02
.051
.793
.611
.05
.389
.629
.11
.01
.053
.123
.06
.024
.014
.029
.004
.002
.003
.002
.0
.001
.002
.001
.0
.001
.003
.005
.007
.021
.005
.001
.0
.0
.003
.006
.027
.037
.015
.003
.104
.108
.081
.748
.786
.193
.056
.13
.035
.074
.001
.003
.0
.0
.0
.001
.004
.003
.033
.02
.028
.024
.228
.12
.138
.118
.002
.003
.057
.066
.048
.014
.008
.008
.008
.003
.019
.017
.011
.055
.029
.013
.0
.001
.001
.011
.001
.004
.01
.038
.002
.016
.029
.019
.038
.036
.027
.037
.149
.116
.093
.025
.007
.001
.001
.022
.02
.008
.002
.001
.002
.001
.002
.004
.045
.004
.107
.006
.005
.034
.031
.028
.032
.044
.019
.0
.0
.003
.002
.0
.004
.0
.0
.0
--
--
--
--
--
--
--
--
.001
.005
--
--
--
.088
.002
.18
.177
.174
--
--
--
--
--
--
--
--
.022
--
--
--
--
--
--
--
--
.001
.046
.002
.095
--
.021
.0
.005
.137
.153
.133
.002
.003
.0
.0
.0
.0
.003
.0
.0
.0
.0
.011
--
--
--
--
--
.981
.992
.976
.995
.998
.978
.869
.987
.18
.153
.003
.001
.001
.027
.086
.11
.011
.003
.002
.153
.645
.506
.253
.262
.063
.018
.098
.353
.004
.02
.195
.003
.013
.007
.002
.002
.007
.014
.012
.002
.001
.001
.001
.001
.002
.002
.001
.009
.002
.002
.001
.001
.137
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.045
.018
.068
.073
.301
.552
.037
.01
.007
.007
.0
.001
.011
.027
.039
.036
.007
.016
--
--
--
--
--
--
--
--
--
--
--
.053
.014
.001
.0
.998
.014
.108
.026
.005
.029
.06
.004
.008
.006
.001
.002
.013
.351
.797
.796
.99
.152
.007
.04
.001
.008
.039
.045
.136
.0
.004
.002
.0
.045
.004
.001
.002
.01
.002
.011
.008
.005
.002
.07
.001
.004
.003
.032
.03
.016
.005
.005
.002
.0
.0
.012
.003
.022
.001
.003
.0
.001
.008
--
--
--
--
--
--
--
--
--
--
.104
.011
.041
.195
.166
.038
.001
.014
.008
.008
.032
.017
.003
.004
.288
.101
.021
.026
.019
.012
.0
.003
.002
.004
.006
.005
.011
--
--
--
--
.052
.012
.004
.01
.147
.069
.043
.015
.125
.118
.009
.012
.085
.015
.284
.104
.004
.011
.001
.001
.196
.0
.002
.002
.009
.122
.003
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
Nckap5
G
G
T
G
-
3
C
A
T
C
G
G
T
T
T
T
G
T
C
T
G
G
G
G
T
T
T
T
G
G
G
T
G
G
G
G
G
G
T
T
T
G
G
C
G
A
-
A
C
A
-
-
G
A
T
-
C
G
A
G
-
-
-
-
-
-
T
A
G
-
G
A
-
-
-
T
G
A
T
-
-
-
T
-
T
G
A
G
-
T
A
C
C
-
-
G
C
T
A
2
-
-
G
-
G
A
C
A
A
A
T
-
-
-
C
T
-
2
2
2
-
C
G
2
-
3
G
-
-
C
A
A
-
-
-
-
-
-
-
-
-
C
C
G
G
-
A
A
-
T
T
-
-
C
G
-
-
-
T
G
A
T
T
-
-
-
-
A
T
A
-
-
T
G
-
-
-
G
G
C
-
-
-
T
A
-
-
-
C
T
C
A
-
C
C
G
C
C
T
-
A
G
T
C
T
G
A
C
A
C
C
G
-
G
C
C
-
45
T
A
2
G
G
C
T
C
A
G
T
A
C
T
G
G
C
A
C
C
T
-
2
C
-
C
4
-
-
A
A
-
C
G
-
5
A
-
C
T
T
A
C
-
11
C
A
G
21
T
C
C
A
G
C
G
-
-
C
G
A
-
-
-
7
G
T
2
T
2
G
T
-
C
T
A
-
-
A
-
-
T
-
-
-
C
6
C
C
G
G
-
-
A
-
-
T
T
A
G
C
2
-
-
2
T
C
2
G
T
C
C
G
T
4
G
A
A
3
T
-
T
T
A
3
-
G
G
T
C
2
A
T
T
3
G
T
A
G
-
C
A
T
4
G
C
T
G
G
T
G
T
G
C
T
-
2
C
A
2
-
A
T
T
G
T
A
G
-
A
-
A
-
C
-
C
A
C
T
A
C
-
2
2
T
-
-
T
A
T
G
G
C
T
-
G
G
T
A
T
2
-
G
-
-
-
G
G
T
G
-
G
2
-
T
T
-
-
-
G
T
2
T
T
T
C
-
C
C
T
-
T
-
-
T
G
G
T
-
T
T
2
T
-
T
-
G
G
A
T
T
3
T
A
-
T
A
-
G
2
T
A
-
T
T
T
-
3
-
G
A
C
C
C
T
A
5
-
C
T
-
G
G
T
G
-
A
T
G
G
-
G
-
A
-
G
G
T
A
T
-
T
G
-
T
A
C
G
G
C
G
-
T
2
  42,266,502
  42,266,504
  42,266,518
  42,266,530
  42,277,074
  42,294,597
  42,299,227
  42,299,237
  42,299,340
  42,299,342
  42,299,347
  42,299,348
  42,299,352
  42,299,354
  42,299,361
  42,299,363
  42,299,364
  42,299,372
  42,299,384
  42,299,386
  42,299,389
  42,299,541
  42,299,559
  42,299,564
  42,299,569
  42,299,573
  42,299,577
  42,299,584
  42,299,585
  42,299,588
  42,299,590
  42,299,591
  42,299,601
  42,299,607
  42,299,608
  42,299,609
  42,299,617
  42,299,619
  42,299,646
  42,299,659
  42,299,663
  42,301,273
  42,301,826
  42,301,827
  42,303,685
  42,330,724
  42,340,276
  42,340,277
  42,340,284
  42,340,337
  42,340,341
  42,340,349
  42,340,369
  42,340,566
  42,340,587
  42,340,596
  42,340,600
  42,340,603
  42,340,615
  42,340,618
  42,340,626
  42,340,631
  42,340,632
  42,340,637
  42,340,647
  42,340,649
  42,340,657
  42,340,658
  42,340,680
  42,340,695
  42,340,702
  42,340,726
  42,340,770
  42,340,776
  42,340,799
  42,340,816
  42,340,833
  42,340,847
  42,340,856
  42,340,863
  42,340,873
  42,340,877
  42,340,885
  42,340,890
  42,340,896
  42,340,904
  42,340,908
  42,340,909
  42,340,918
  42,340,922
  42,340,931
  42,340,950
  42,340,954
  42,340,960
  42,340,961
  42,340,965
  42,340,968
  42,340,972
  42,340,975
  42,341,006
  42,341,015
  42,341,021
  42,341,029
  42,341,034
  42,341,046
  42,341,051
  42,341,055
  42,341,062
  42,341,066
  42,341,093
  42,341,095
  42,341,110
  42,341,131
  42,341,136
  42,341,174
  42,341,197
  42,341,201
  42,341,221
  42,341,232
  42,341,256
  42,341,290
  42,341,295
  42,341,296
  42,341,299
  42,341,307
  42,341,313
  42,341,321
  42,341,334
  42,341,338
  42,341,357
  42,341,374
  42,341,409
  42,341,422
  42,341,424
  42,341,437
  42,341,445
  42,341,446
  42,341,458
  42,341,461
  42,341,464
  42,341,471
  42,341,473
  42,341,474
  42,341,478
  42,341,482
  42,341,489
  42,341,584
  42,341,592
  42,341,602
  42,341,609
  42,341,614
  42,341,634
  42,341,639
  42,341,640
  42,341,667
  42,341,674
  42,341,679
  42,341,682
  42,341,693
  42,341,710
  42,341,753
  42,341,760
  42,341,788
  42,341,790
  42,341,791
  42,341,793
  42,341,795
  42,341,812
  42,341,817
  42,341,825
  42,341,839
  42,343,989
  42,343,993
  42,343,994
  42,344,016
  42,344,033
  42,344,055
  42,344,070
  42,344,072
  42,344,087
  42,344,093
  42,344,099
  42,344,105
  42,355,235
  42,390,248
  42,390,253
  42,390,354
  42,390,357
  42,390,367
  42,390,374
  42,390,376
  42,390,383
  42,390,386
  42,390,393
  42,390,410
  42,390,414
  42,390,421
  42,390,434
  42,390,445
  42,390,449
  42,397,424
  42,397,430
  42,397,431
  42,400,490
  42,400,492
  42,400,560
  42,400,589
  42,400,810
  42,401,388
  42,401,764
  42,401,943
  42,405,589
  42,405,595
  42,429,311
  42,430,135
  42,431,791
  42,434,790
  42,437,698
  42,512,278
  42,512,286
  42,512,288
  42,574,064
  42,574,079
  42,574,081
  42,626,238
  42,626,242
  42,626,521
  42,626,586
  42,626,605
  42,641,604
  42,645,487
  42,645,495
  42,645,556
  42,645,587
  42,645,627
  42,645,664
  42,645,666
  42,645,684
  42,684,979
  42,714,795
  42,721,904
  42,745,342
  42,747,274
  42,752,727
  42,752,735
  42,752,741
  42,752,756
  42,752,760
  42,752,767
  42,762,672
  42,771,944
  42,778,917
  42,778,922
  42,778,926
  42,778,933
  42,778,938
  42,778,997
  42,779,056
  42,779,070
  42,779,074
  42,783,072
  42,791,629
  42,791,630
  42,791,904
  42,792,508
  42,792,534
  42,835,102
  42,835,129
  42,835,133
  42,835,137
  42,835,141
  42,835,144
  42,835,147
  42,839,299
  42,891,300
  42,894,489
  42,895,453
  42,895,461
  42,895,465
  42,900,241
  42,900,321
  42,900,432
  42,900,455
  42,900,473
  42,900,479
  42,900,532
  42,900,639
  42,900,645
  42,900,703
  42,900,722
  42,900,838
  42,900,848
  42,900,854
  42,900,871
  42,900,911
  42,900,968
  42,901,060
  42,901,129
  42,902,589
  42,902,590
  42,902,594
  42,902,597
  42,902,600
  42,902,602
  42,902,606
  42,902,612
  42,902,614
  42,902,618
  42,902,619
  42,902,622
  42,902,625
  42,902,627
  42,902,630
  42,902,635
  42,902,639
  42,902,640
  42,902,643
  42,902,647
  42,908,024
  42,922,941
  42,922,961
  42,922,970
  42,922,972
  42,922,982
  42,922,987
  42,923,002
  42,923,008
  42,923,028
  42,923,042
  42,923,077
  42,923,083
  42,923,088
  42,923,094
  42,923,106
  42,923,108
  42,923,128
  42,923,132
  42,923,149
  42,923,155
  42,923,162
  42,923,178
  42,923,189
  42,923,194
  42,923,204
  42,923,208
  42,923,217
  42,923,222
  42,923,225
  42,923,227
  42,923,254
  42,923,255
  42,923,264
  42,923,266
  42,923,276
  42,923,281
  42,923,300
  42,923,306
  42,923,341
  42,923,344
  42,923,353
  42,923,367
  42,923,372
  42,923,400
  42,923,416
  42,923,422
  42,923,429
  42,923,462
  42,923,474
  42,923,499
  42,923,507
  42,923,509
  42,923,513
  42,923,520
  42,923,533
  42,923,548
  42,923,598
  42,923,604
  42,923,616
  42,923,642
  42,923,645
  42,923,646
  42,923,651
  42,923,655
  42,923,657
  42,923,662
  42,923,666
  42,923,670
  42,954,897
  42,955,090
  42,955,092
  42,955,298
  42,955,380
  42,955,481
  42,955,497
  42,955,523
  42,955,524
  42,955,574
  42,955,671
  42,955,684
  42,955,695
  42,955,704
  42,955,753
  42,965,343
  42,966,271
  42,966,316
  42,966,384
  42,966,451
  42,967,512
  42,967,550
  42,967,554
  42,967,561
  42,967,578
  42,967,588
  42,967,614
  42,967,636
  42,967,646
  42,967,647
  42,967,661
  42,967,792
  42,967,799
  42,967,834
  42,967,877
  42,967,937
  42,967,960
  42,967,984
  42,968,054
  42,968,069
  42,968,150
  42,968,154
  42,968,162
  42,968,209
  42,968,236
  42,968,237
  42,968,243
  42,968,302
  42,968,315
  42,968,335
  42,968,349
  42,968,400
  42,968,405
  42,968,414
  42,968,443
  42,968,445
  42,968,451
  42,968,470
  42,968,486
  42,968,498
  42,968,502
  42,968,510
  42,968,529
  42,968,536
  42,968,545
  42,968,546
  42,968,548
  42,968,554
  42,968,555
  42,968,562
  42,968,574
  42,968,583
  42,968,592
  42,968,599
  42,968,603
  42,968,626
  42,968,643
  42,968,673
  42,968,678
  42,968,764
  42,968,802
  42,968,812
  42,968,818
  42,968,842
  42,968,849
  42,968,863
  42,968,870
  42,969,172
  42,969,188
  42,969,197
  42,969,208
  42,969,219
  42,969,245
  42,969,268
  42,969,283
  42,969,293
  42,969,309
  42,969,324
  42,969,331
  42,969,349
  42,969,356
  42,969,367
  42,969,376
  42,969,382
  42,969,438
  42,969,445
  42,969,446
  42,969,463
  42,980,013
  42,980,016
  42,980,019
  42,980,024
  42,980,025
  42,980,030
  43,003,990
  43,003,991
  43,004,009
  43,004,012
  43,004,041
  43,004,050
  43,004,059
  43,004,066
  43,004,084
  43,004,097
  43,004,126
  43,004,133
  43,004,141
  43,004,155
  43,004,200
  43,004,201
  43,004,224
  43,004,242
  43,004,275
  43,004,299
  43,004,303
  43,004,313
  43,004,330
  43,004,333
  43,009,959
  43,010,842
  43,010,844
  43,010,845
  43,011,152
  43,013,054
  43,045,794
-
T
-
-
34
-
-
-
C
G
-
C
A
A
A
C
C
A
A
C
C
C
A
A
C
A
A
C
A
A
C
A
C
C
C
A
C
A
C
G
G
T
C
G
T
A/G
T
C
-
-
A
A
T
-
-
A
-
-
G
A
C
A
C
C
T
A
C
T
-
C
-
-
C
A
2
-
-
-
-
C
A
A
-
A
-
A
C
A
A
-
-
-
-
C
A
A
-
-
-
-
A
C
-
A
C
-
A
-
-
-
A
A
A
2
A
-
3
-
-
-
7
G
A
-
A
-
-
A
A
-
G
-
G
T
A
C
C
A
A
A
2
A
G
T
-
C
C
-
A
-
A
C
A
T
-
A
G
C
-
C
-
-
C
C
5
4
G
-
G
G
C
A
G
T
C
A
C
-
A
-
A
A
C
-
-
47
G
G
-
G
-
-
G
-
-
-
-
-
-
2
C
T
C
C/T
T/C
G/A
A/G
C/T
A/C
C/T
C/A
C
4
A
T
C/T
T
-
G
-
-
G/T
G/A
C/T
T/C
C/T
A/C
G/-
T/C
A/-
T
A
A
A
A
G
T
T
T/-
6
2/-
-
A
-
-
T
G
-
-
32
T
-
C
-
-
T
-
-
-
C
C/A
-/3
11/-
C/A
A/G
G/A
-
A
T
A
C
A
A
T
3
57
T
A
T
T
A
T
-
-
-
-
-
-
-
-
A
-
-
-
T
C
-
A
18
A
11
8
7
A
-
A
A
A
C
17
14
G
2
24
A
A
C
C
-
-
G
G
-
-
-
-
-
A
-
-
-
-
-
-
T
-
-
-
T
-
-
T
-
A
-
-
-
G
-
T
A
-
-
-
-
-
-
G
-
-
G
-
-
-
-
-
A
-
-
G
-
-
-
A
-
-
-
-
C
T
A
C
T
-
-
-
A
-
T
T
A
-
G
-
C
A
-
-
-
T
-
-
-
A
G
-
-
-
-
-
-
-
C
-
-
A
C
-
-
T
A
A
A
T
-
-
C
-
T
T
-
C
A
C
C
A
T
-
-
-
-
-
-
-
A
-
-
-
A
-
A
G
C
T
T
G
A
-
-
-
A
T
-
A
-
-
-
-
G
-
-
G/T
G
G
-
A
A
-
-
-
C
-
-
-
T
-
A
-
-
-
-
-
A
G
-
53
T
C
A
C
C
G
T
C
G
-
-
-
T
-
C
-
A
-
-
G
T
-
A
-
-
T
-
T
T
-
-
A
C
C
C
2/-