Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 149,318 (bp)   Positions: 306
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
SS/JrHsdMcwi (MCW) 
.0
.042
.001
.026
.002
.999
.0
.0
.0
.001
.521
.03
.0
.015
.0
.006
.0
.0
.0
.002
.0
.002
.025
--
.025
.001
.0
.013
.0
.753
.801
.845
.08
.002
.002
.0
.0
.002
.101
.001
.017
.005
.0
.004
.011
.118
.156
.997
.0
.015
.005
.216
.008
.001
.003
.997
.992
--
.33
.0
.0
.001
.001
.021
.455
.589
.003
.414
.0
.002
.01
.0
.0
.024
.001
.106
.001
.001
.0
.092
.048
.002
.0
.105
.004
.001
.0
.006
.073
.009
.001
.0
.0
.116
.0
.0
.003
.015
--
--
.016
.003
.001
.0
.002
.001
.0
.012
.007
--
.116
.001
.0
.0
.423
.006
.002
.004
.002
.973
.003
.001
.001
.0
.0
.004
.001
.011
.0
.009
.034
.043
--
--
--
--
--
--
--
--
.017
.03
.641
.0
.004
.0
.022
.0
.001
.0
.0
.001
.0
.021
.0
.001
.0
.0
.0
.013
.0
.004
.0
.0
.0
.002
.002
.007
.001
.001
.0
.0
.0
.0
.001
.0
.0
.002
.192
.029
.359
.013
.004
.002
.001
.009
.002
.004
.007
.002
.003
.017
.647
.835
.018
.001
.002
.0
.0
.0
.004
.006
.001
.0
.004
.007
.003
.007
.007
.057
.286
.013
.013
.031
.002
.0
.0
.0
.005
.0
.0
.0
.0
.0
.0
.0
.0
.001
.0
.0
.0
.001
.075
.001
.0
.0
.0
.0
.003
.011
.02
.213
.006
.005
.003
.014
.004
.001
.01
.0
.002
.044
.0
.007
.041
.069
.007
.008
.002
.006
.0
.0
.027
.001
.011
.0
.0
.092
.001
.006
.0
.012
.004
.0
.0
.0
.054
.038
.134
.02
.017
.322
.298
.004
.02
.016
.0
.031
.0
.194
.097
.048
--
--
--
--
--
--
.001
.008
.001
.0
.002
.0
.001
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC100911555
LOC100911555
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
Myof
C
T
A
C
T
C
C
T
G
C
G
T
C
C
T
G
C
C
T
G
G
T
G
G
C
T
T
T
A
G
T
G
C
T
T
C
A
G
G
G
T
G
G
C
A
T
T
A
T
A
C
G
T
T
T
C
A
C
C
C
G
C
C
C
G
G
T
A
G
C
C
A
G
T
A
T
T
G
T
C
A
T
C
T
C
A
A
G
T
C
G
T
C
T
C
T
C
C
C
G
C
C
G
G
T
C
C
C
G
A
A
A
A
T
G
G
C
C
A
C
G
G
A
A
T
T
A
A
T
G
G
G
T
G
T
T
T
T
T
A
T
T
C
G
A
A
A
A
G
T
T
G
A
C
A
G
C
C
A
A
G
A
C
A
C
C
T
T
G
A
T
T
C
T
T
T
G
T
G
G
C
C
G
T
T
A
A
C
A
C
T
T
C
G
G
T
G
T
C
A
C
G
C
G
T
G
G
G
G
C
T
A
A
G
A
T
A
T
G
C
A
G
T
A
T
T
T
A
C
C
A
T
T
T
A
G
G
C
A
G
C
A
T
A
G
T
A
G
G
C
C
G
C
T
T
C
A
C
T
G
G
C
C
A
C
A
A
G
C
T
T
T
G
G
C
C
T
C
C
C
C
C
T
T
G
A
T
A
T
T
G
G
A
C
T
C
C
G
C
A
A
A
G
A
G
C
  256,586,508
  256,587,895
  256,596,803
  256,597,303
  256,598,058
  256,598,138
  256,600,498
  256,601,255
  256,601,562
  256,601,637
  256,602,043
  256,602,271
  256,602,857
  256,604,319
  256,604,826
  256,607,608
  256,607,825
  256,608,799
  256,608,905
  256,609,854
  256,611,099
  256,611,872
  256,612,103
  256,612,147
  256,612,520
  256,614,107
  256,614,775
  256,615,883
  256,616,178
  256,617,081
  256,617,085
  256,617,089
  256,617,738
  256,618,503
  256,618,507
  256,618,644
  256,618,827
  256,623,082
  256,623,101
  256,623,219
  256,623,480
  256,623,555
  256,623,560
  256,623,569
  256,623,570
  256,623,576
  256,623,824
  256,624,294
  256,625,161
  256,626,481
  256,627,102
  256,631,808
  256,639,520
  256,644,962
  256,653,638
  256,654,397
  256,654,401
  256,655,341
  256,655,505
  256,657,720
  256,662,006
  256,665,867
  256,666,186
  256,667,257
  256,667,594
  256,667,598
  256,668,832
  256,670,135
  256,670,941
  256,672,220
  256,672,323
  256,674,029
  256,674,298
  256,674,455
  256,676,043
  256,677,696
  256,677,931
  256,679,395
  256,679,598
  256,681,586
  256,681,595
  256,682,636
  256,682,972
  256,683,799
  256,683,878
  256,684,232
  256,685,798
  256,685,908
  256,686,417
  256,686,569
  256,687,981
  256,688,098
  256,688,203
  256,688,412
  256,688,527
  256,688,703
  256,688,826
  256,689,652
  256,690,146
  256,690,148
  256,690,938
  256,691,957
  256,691,973
  256,692,373
  256,692,700
  256,696,233
  256,697,253
  256,701,895
  256,705,807
  256,708,065
  256,711,939
  256,712,081
  256,712,234
  256,712,284
  256,712,777
  256,712,836
  256,712,845
  256,712,905
  256,712,915
  256,713,201
  256,713,497
  256,713,507
  256,713,648
  256,713,757
  256,713,812
  256,714,012
  256,714,107
  256,714,265
  256,714,657
  256,714,738
  256,714,978
  256,715,296
  256,715,478
  256,715,488
  256,715,499
  256,715,611
  256,715,618
  256,715,625
  256,715,677
  256,715,805
  256,715,875
  256,715,925
  256,716,029
  256,716,240
  256,716,612
  256,716,616
  256,716,855
  256,717,122
  256,717,171
  256,717,209
  256,717,259
  256,717,281
  256,717,492
  256,717,557
  256,717,621
  256,717,695
  256,717,698
  256,717,742
  256,717,862
  256,717,875
  256,717,925
  256,717,973
  256,718,098
  256,718,100
  256,718,109
  256,718,147
  256,718,766
  256,719,095
  256,719,167
  256,719,345
  256,719,368
  256,719,425
  256,719,449
  256,719,611
  256,719,628
  256,719,720
  256,719,726
  256,719,776
  256,720,276
  256,720,302
  256,720,546
  256,721,143
  256,721,155
  256,721,167
  256,721,174
  256,721,195
  256,721,314
  256,721,390
  256,721,406
  256,721,467
  256,721,490
  256,721,506
  256,721,574
  256,721,627
  256,722,112
  256,722,181
  256,722,308
  256,722,460
  256,722,661
  256,722,662
  256,722,715
  256,722,802
  256,722,804
  256,722,876
  256,722,902
  256,723,169
  256,723,175
  256,723,191
  256,723,247
  256,723,316
  256,723,600
  256,723,923
  256,723,940
  256,723,957
  256,724,078
  256,724,105
  256,724,407
  256,724,662
  256,724,719
  256,724,780
  256,724,811
  256,724,894
  256,724,922
  256,724,972
  256,725,018
  256,725,076
  256,725,088
  256,725,095
  256,725,107
  256,725,128
  256,725,139
  256,725,144
  256,725,145
  256,725,169
  256,725,173
  256,725,176
  256,725,178
  256,725,198
  256,725,203
  256,725,214
  256,725,224
  256,725,235
  256,725,255
  256,725,258
  256,725,260
  256,725,318
  256,725,325
  256,725,330
  256,725,424
  256,725,472
  256,725,531
  256,725,538
  256,725,557
  256,725,564
  256,725,598
  256,725,621
  256,725,631
  256,725,632
  256,725,642
  256,725,741
  256,725,800
  256,725,820
  256,725,844
  256,725,875
  256,725,901
  256,726,061
  256,726,063
  256,726,089
  256,726,135
  256,726,138
  256,726,215
  256,726,257
  256,726,274
  256,726,299
  256,726,321
  256,726,419
  256,727,003
  256,727,267
  256,727,282
  256,727,307
  256,727,392
  256,727,510
  256,727,514
  256,727,641
  256,727,745
  256,727,758
  256,727,944
  256,727,961
  256,728,386
  256,728,442
  256,728,830
  256,729,299
  256,729,754
  256,729,767
  256,729,797
  256,729,809
  256,729,839
  256,729,865
  256,730,673
  256,730,903
  256,732,012
  256,733,051
  256,733,754
  256,734,147
  256,734,222
  256,734,398
T
C
G
T
C
T
T
C
A
T
C
C
G
T
C
A
T
T
G
C
A
C
G/A
G/A
T
A
C
C
G
G/T
T/G
G/T
T
A
T/A
T
G
A
A
A
G
A
A
T
G
C
C
G
C
G
T
G/A
C
C
C
C/G
A/G
C/T
T
T
A
G
G
G
G/T
G/T
C
G
A
T
T
G
C
C
A/T
C
C
A
C
T
G
C
T
C
T
G
T
A
A
T
A
C
T
A
T
C
T
T
C/A
G/C
T
T
A
A
A
A
T
T
A
A/G
G
G
C
G
A
C
T
T
G
T
A
A
C
T
G
C
G
G
C
A
T
A
C
C
C
C
C
C
C
T
C
C
T
A
T
G
G
C
A
C
C
A
C
T
G
A
T
G
G
C
C
G
A
G
A
T
C
G
A
G
C
G
T
A
A
C
A
A
A
T
T
T
C
C
C
G
G
A
G
A
C
C
T
A
A
C
T
C
T
G
T
A
T
T
A
G/A
G/A
T
T
T
A
C
G
A
T
C
G
C
A
T
C
C
C
G
C
C
A
T
G
T
G
C
C
C
T
T
A
T
G
A
T
G
C
G
C
A
G
A
A
A
T
A
T
A
C
T
T
T
A
T
T
T
T
G
G
T
T
A
T
C
C
A
A
A
T
T
G
A
T
T
A
T
A
C
A
G
G
G
C
A
A
C
G
C/T
T/C
C/T
C/T
G/A
T
G
G
C
A
G
C
T