Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 139,764 (bp)   Positions: 272
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
WAG/RijCrl (2020) 
.0
.0
.346
.069
.038
.01
.021
.006
.023
.003
.002
.009
.002
.002
.011
.004
.004
.022
.007
.001
.005
.014
.012
.013
.003
.002
.0
.004
.021
.001
.007
.002
.0
.018
.03
.029
.001
.001
.002
.002
.015
.0
.0
.0
.012
.0
.0
.001
.002
.0
.0
.0
.003
.015
.001
.005
.002
.015
.837
.06
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.068
.008
.907
.918
.083
.093
.0
.003
.002
.0
.001
.026
.05
.063
.039
.029
.007
.005
.027
.012
--
.0
.001
.0
.001
.011
.077
.0
.001
.004
.002
.015
--
.179
.0
.025
.001
.026
.003
.013
.0
.004
.004
.015
--
--
.007
.005
.006
.014
.025
--
--
--
--
--
--
--
--
--
.007
--
.199
--
--
--
--
--
.117
.223
.002
.908
.28
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.333
--
.106
.02
.003
.004
.033
.015
.079
.186
.17
.079
.049
.017
.022
.004
.001
.049
.359
.042
.006
.275
.271
.256
.239
.229
.012
.003
.003
.002
.161
.412
--
--
.077
.174
.635
.001
.032
.048
.0
.0
.002
.001
.002
.0
.001
.001
.001
.173
.0
.005
--
.0
.003
.017
.006
.102
.222
.365
.642
.316
.199
.0
.358
.54
.04
.012
.003
.001
.011
.026
.001
.008
.038
.001
.0
.0
.022
.0
.0
.004
.004
.002
.003
.001
.009
.0
.014
.0
.001
.001
.0
.016
.019
.119
.001
.158
.001
.001
.206
.001
.001
.004
.028
.0
.001
.287
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
Mccc1
G
T
C
T
A
-
6
-
-
G
-
C
-
G
T
G
-
-
G
G
-
C
-
G
T
G
A
C
T
-
-
-
-
T
G
A
-
-
G
G
-
T
A
-
-
G
-
2
-
-
A
G
C
C
G
-
T
5
C
-
G
G
14
3
-
-
-
T
A
A
3
3
2
G
-
A
T
T
T
T
C
C
C
-
A
A
A
C
A
G
G
G
G
G
-
-
T
T
G
G
G
T
3
A
A
-
-
-
C
T
T
T
T
T
T
G
T
-
T
A
T
10
A
G
C
6
-
-
4
-
C
T
C
T
G
T
A
A
C
A
A
3
C
A
C
T
A
T
T
-
G
-
G
C
G
C
T
T
G
C
G
G
C
C
C
A
-
G
G
C
A
T
T
-
G
C
C
T
2
A
A
A
G
A
C
-
-
C
C
-
-
C
G
G
T
-
G
C
A
G
-
C
A
C
C
G
T
A
A
2
T
6
A
A
G
G
C
G
A
C
C
T
A
T
5
T
G
G
A
C
G
C
C
A
C
-
T
T
G
A
G
G
G
T
G
G
G
C
T
A
T
C
4
A
A
C
A
T
C
T
C
G
T
A
A
C
T
-
A
A
G
C
  122,551,142
  122,551,379
  122,552,476
  122,553,330
  122,553,583
  122,553,598
  122,553,606
  122,553,667
  122,553,672
  122,553,753
  122,553,766
  122,553,787
  122,553,797
  122,553,798
  122,553,812
  122,553,832
  122,553,845
  122,553,853
  122,553,878
  122,553,883
  122,553,893
  122,553,981
  122,553,985
  122,553,988
  122,553,994
  122,553,995
  122,554,008
  122,554,012
  122,554,034
  122,554,042
  122,554,052
  122,554,059
  122,554,063
  122,554,071
  122,554,085
  122,554,097
  122,554,126
  122,554,127
  122,554,134
  122,554,144
  122,554,161
  122,554,165
  122,554,166
  122,554,177
  122,554,189
  122,554,232
  122,554,234
  122,554,241
  122,554,291
  122,554,298
  122,554,303
  122,554,318
  122,554,333
  122,554,338
  122,554,346
  122,554,354
  122,554,360
  122,555,096
  122,555,243
  122,556,617
  122,557,617
  122,557,622
  122,557,631
  122,557,647
  122,557,654
  122,557,655
  122,557,659
  122,557,693
  122,557,694
  122,557,705
  122,557,709
  122,557,716
  122,557,726
  122,557,730
  122,557,737
  122,559,292
  122,560,192
  122,560,401
  122,560,438
  122,560,500
  122,560,848
  122,561,019
  122,561,375
  122,561,470
  122,561,597
  122,561,625
  122,561,659
  122,561,661
  122,561,671
  122,561,674
  122,561,676
  122,561,678
  122,561,681
  122,561,684
  122,561,694
  122,561,696
  122,561,782
  122,562,351
  122,564,284
  122,564,647
  122,564,718
  122,565,705
  122,566,813
  122,566,834
  122,566,842
  122,566,849
  122,566,858
  122,566,872
  122,567,366
  122,568,878
  122,569,202
  122,569,211
  122,569,604
  122,569,637
  122,569,848
  122,569,911
  122,570,043
  122,570,169
  122,570,610
  122,573,031
  122,574,449
  122,574,534
  122,574,547
  122,574,548
  122,575,067
  122,575,086
  122,575,608
  122,575,612
  122,575,657
  122,575,709
  122,575,854
  122,576,066
  122,576,304
  122,577,141
  122,577,468
  122,578,613
  122,578,945
  122,579,429
  122,580,115
  122,580,845
  122,581,276
  122,581,747
  122,581,753
  122,583,576
  122,583,609
  122,599,343
  122,599,952
  122,600,411
  122,610,999
  122,666,197
  122,666,235
  122,666,261
  122,666,300
  122,666,301
  122,666,740
  122,666,799
  122,666,898
  122,667,215
  122,667,782
  122,669,100
  122,669,139
  122,669,181
  122,669,275
  122,669,302
  122,670,251
  122,670,562
  122,672,907
  122,673,259
  122,673,624
  122,673,625
  122,673,666
  122,673,669
  122,673,718
  122,673,731
  122,673,789
  122,673,810
  122,673,995
  122,674,018
  122,674,344
  122,674,520
  122,674,772
  122,676,979
  122,677,193
  122,679,041
  122,679,340
  122,679,491
  122,679,496
  122,679,510
  122,679,520
  122,679,525
  122,679,544
  122,679,561
  122,679,562
  122,679,566
  122,679,626
  122,679,642
  122,682,230
  122,682,232
  122,682,810
  122,682,814
  122,684,513
  122,684,576
  122,684,587
  122,684,650
  122,684,672
  122,684,823
  122,684,844
  122,684,899
  122,684,901
  122,684,929
  122,684,934
  122,684,937
  122,684,944
  122,685,066
  122,685,147
  122,685,342
  122,685,704
  122,685,994
  122,686,048
  122,686,084
  122,686,122
  122,686,382
  122,686,451
  122,686,456
  122,686,458
  122,686,470
  122,686,475
  122,686,488
  122,686,497
  122,686,699
  122,686,724
  122,687,178
  122,687,261
  122,687,496
  122,687,534
  122,687,625
  122,687,832
  122,688,012
  122,688,059
  122,688,106
  122,688,117
  122,688,145
  122,688,158
  122,688,259
  122,688,497
  122,688,558
  122,688,629
  122,688,819
  122,689,120
  122,689,122
  122,689,133
  122,689,166
  122,689,193
  122,689,237
  122,689,244
  122,689,245
  122,689,256
  122,689,272
  122,689,293
  122,689,308
  122,689,381
  122,689,459
  122,689,487
  122,689,492
  122,689,541
  122,689,693
  122,689,751
  122,689,798
  122,690,203
  122,690,325
  122,690,409
  122,690,523
A
C
T
G
G
A
-
A
C
A
C
-
T
A
-
A
T
C
-
-
G
G
C
-
C
T
C
-
-
A
A
3
G
A
C
-
2
A/T
-
T
G
A
C
A
A
A
A
-
A
G/G
G
-
A
-
-
A
C/A
-
T
A
-
C
-
-
T
G
C
C
G
-
-
-
-
-
A
T
C
G
C
C
T
T
T
2
G
-
G
-
-
-
A
A
A
-
16
5
C
G
C
A
A
C
3/-
A/-
A/-
-/C
A
C
T
C
-
A
C
G
C
C
C
4
C
C
C
-
T
A
T
-
A
C
-
A
T
C
T
C
A
C
G
T
T
G
G
-
-
G
-
A
G
A
C
C
-
A
T
T
C
G
C
C
C
T
T
A
G
T
C/G
A/T
C
A
G/A
C/G
A/C
T/C
C
-/A
G/A
C/T
T
C
-
G
G
T
A
T
T
A
T
-
-
A
C
A
C
-
C
T
-
-
G
A
7
T
G
A
T
A
C
T
T
-
C
-
C
G
A
A
T
A
G
T
T
C
G
C
-
C
A
A
T
T
A
T
T
T
T
T
C
A
A
G
A
T
A
C
A
A
A
T
C
G
C
T
-
G
G
T
G
C
G
C
T
C
G
G
-
T
G
3
G
G
A
T