Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 132,454 (bp)   Positions: 308
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
SHRSP/A3NCrl (2019) 
1.0
.997
--
--
.052
.115
.036
.943
.0
.161
.593
.02
.0
--
.042
.959
1.0
.291
.001
.002
.0
.001
.396
.003
.002
.002
.016
.001
.001
.004
.093
.098
.156
.23
.0
.018
.0
.137
.001
.003
.003
.001
.0
.002
.037
.002
.0
.001
.001
.002
.01
.042
.093
.004
.0
.002
.027
.006
.013
.009
.0
.0
.0
.016
.001
.001
.969
.021
.0
.008
.002
.084
.067
.003
.001
.001
.798
.857
.123
.874
.652
.187
.018
.008
.998
.611
.007
.219
.039
.019
--
--
--
--
--
--
--
--
--
--
--
--
.0
.025
.001
.007
.001
.0
.0
.0
.0
.007
.0
.001
.001
.015
.006
.0
.0
.008
.011
.004
.003
.007
.004
.206
.007
.006
.0
.0
.041
.003
.0
.0
.0
.0
.004
.241
.015
.006
.003
.002
.001
.001
.001
.001
.001
.001
.004
.001
.002
.005
.008
.068
.076
.254
.27
.162
.186
.03
.021
.0
.0
.03
.013
.001
--
--
.012
.511
.003
.006
.17
.018
.555
.005
.001
.006
.004
.135
.012
.0
.005
.095
--
--
.027
.003
.001
.009
.0
.003
.001
.056
.0
.003
.0
.0
.0
.219
.0
.035
.224
.0
.085
.045
.0
.006
.102
.001
.06
.0
.0
.0
.124
.002
.815
.406
.0
.026
.0
.165
.16
.001
.0
.0
.0
.001
.054
.014
.184
.552
.008
--
--
--
--
.0
.0
.003
.003
.007
.052
.001
.0
.243
.0
.001
.002
.001
.015
.006
.096
.036
.001
.0
.0
.037
.0
.0
.013
.447
.162
.275
1.0
.018
.0
.012
.003
.0
.924
.001
--
.107
.011
.386
.0
.001
.0
.002
.376
.011
.025
.0
.182
.008
.353
.005
.411
.212
.001
.015
.061
.005
.001
.009
.115
.007
.083
.002
.001
.002
.013
.001
.0
.001
.108
.163
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
Kcnk10
G
T
A
A
-
T
-
-
C
-
A
G
A
A
C
C
G
G
C
C
T
A
C
T
T
A
C
T
C
G
-
-
-
G
T
A
C
T
T
A
G
A
T
G
C
T
G
G
G
C
T
A
-
T
A
T
A
C
T
C
T
T
G
A
C
A
T
A
C
25
A
A
11
G
12
-
C
C
G
G
2
T
A
T
-
C
G
A
A
G
-
-
-
-
T
-
C
C
-
-
-
-
G
A
G
T
G
A
A
3
G
A
C
T
T
G
10
C
A
T
G
T
C
C
-
A
C
A
T
A
2
T
A
A
G
A
A
C
C
C
C
C
C
C
C
G
C
G
G
G
T
T
T
G
G
G
G
G
G
A
G
A
C
G
A
C
C
T
A
A
G
G
G
-
T
-
G
C
A
G
C
G
C
C
C
2
G
C
G
-
-
-
A
A
-
C
A
C
C
G
G
A
G
G
A
C
T
G
G
A
C
A
T
G
A
T
-
T
A
A
C
A
A
G
C
-
G
-
-
-
-
T
T
C
G
T
T
C
G
G
-
-
A
-
-
C
G
T
A
C
C
T
A
G
C
T
G
G
T
T
G
C
G
G
A
A
T
A
G
G
A
-
T
A
C
C
T
T
A
A
T
C
-
A
G
3
-
T
G
G
A
T
-
A
A
-
A
T
T
G
T
T
8
T
A
6
T
C
  122,419,195
  122,419,493
  122,422,268
  122,422,269
  122,423,528
  122,424,003
  122,424,014
  122,424,305
  122,424,990
  122,425,429
  122,427,416
  122,427,599
  122,428,817
  122,428,900
  122,431,119
  122,432,132
  122,433,581
  122,434,080
  122,434,293
  122,434,634
  122,434,948
  122,435,210
  122,435,279
  122,435,378
  122,435,457
  122,435,622
  122,436,976
  122,436,986
  122,436,988
  122,436,993
  122,437,005
  122,437,008
  122,437,016
  122,437,030
  122,437,246
  122,438,128
  122,438,131
  122,438,205
  122,438,334
  122,438,465
  122,438,613
  122,438,659
  122,438,793
  122,438,812
  122,439,058
  122,439,070
  122,439,220
  122,439,681
  122,439,730
  122,439,761
  122,440,123
  122,440,396
  122,440,466
  122,440,478
  122,440,503
  122,440,627
  122,440,669
  122,440,687
  122,440,866
  122,440,948
  122,440,965
  122,441,139
  122,441,159
  122,441,353
  122,441,412
  122,441,415
  122,441,710
  122,441,780
  122,441,852
  122,441,969
  122,442,143
  122,442,175
  122,442,202
  122,442,348
  122,442,481
  122,442,589
  122,442,735
  122,442,741
  122,442,818
  122,442,956
  122,442,994
  122,443,047
  122,443,212
  122,443,361
  122,443,424
  122,443,454
  122,443,534
  122,443,616
  122,443,673
  122,443,707
  122,443,895
  122,443,992
  122,443,993
  122,444,128
  122,444,144
  122,444,146
  122,444,218
  122,444,236
  122,444,283
  122,444,284
  122,444,297
  122,444,323
  122,444,371
  122,444,466
  122,444,489
  122,444,572
  122,444,821
  122,444,852
  122,444,895
  122,444,897
  122,445,413
  122,445,707
  122,445,973
  122,446,175
  122,446,240
  122,446,335
  122,446,519
  122,446,674
  122,447,036
  122,447,097
  122,447,355
  122,447,537
  122,447,864
  122,447,937
  122,448,297
  122,448,601
  122,448,638
  122,448,639
  122,449,102
  122,449,137
  122,449,512
  122,450,042
  122,450,264
  122,450,905
  122,451,183
  122,451,214
  122,451,413
  122,451,733
  122,451,786
  122,451,788
  122,451,790
  122,451,792
  122,451,794
  122,451,796
  122,451,798
  122,451,815
  122,451,818
  122,451,819
  122,451,827
  122,451,839
  122,451,840
  122,451,844
  122,451,846
  122,451,852
  122,451,853
  122,451,960
  122,451,966
  122,451,967
  122,451,973
  122,452,017
  122,452,024
  122,452,803
  122,452,927
  122,452,992
  122,453,502
  122,454,048
  122,455,903
  122,456,091
  122,456,902
  122,457,725
  122,458,452
  122,458,498
  122,458,733
  122,459,134
  122,459,186
  122,459,334
  122,459,900
  122,459,951
  122,459,953
  122,460,331
  122,460,383
  122,460,408
  122,460,422
  122,460,872
  122,461,095
  122,461,106
  122,462,023
  122,462,748
  122,462,800
  122,463,028
  122,463,039
  122,463,443
  122,463,762
  122,463,967
  122,464,220
  122,464,232
  122,464,273
  122,464,462
  122,464,652
  122,464,775
  122,464,830
  122,464,989
  122,465,218
  122,465,693
  122,465,840
  122,466,549
  122,467,107
  122,467,270
  122,468,317
  122,468,522
  122,469,866
  122,470,440
  122,470,571
  122,470,687
  122,470,781
  122,470,858
  122,470,928
  122,470,934
  122,471,147
  122,471,197
  122,471,631
  122,471,819
  122,472,071
  122,473,764
  122,476,866
  122,477,012
  122,477,013
  122,477,021
  122,477,033
  122,477,041
  122,477,049
  122,477,056
  122,478,668
  122,480,210
  122,480,689
  122,480,692
  122,481,025
  122,481,689
  122,483,968
  122,484,830
  122,485,843
  122,486,527
  122,488,357
  122,489,029
  122,489,238
  122,491,423
  122,492,133
  122,492,696
  122,493,348
  122,493,587
  122,494,722
  122,494,734
  122,494,794
  122,495,879
  122,495,891
  122,496,480
  122,496,681
  122,497,194
  122,497,647
  122,497,881
  122,498,492
  122,498,591
  122,498,729
  122,499,004
  122,500,257
  122,504,047
  122,505,786
  122,505,883
  122,506,190
  122,507,511
  122,507,988
  122,509,875
  122,511,194
  122,512,666
  122,513,887
  122,514,009
  122,514,226
  122,514,236
  122,514,549
  122,514,589
  122,515,257
  122,515,752
  122,517,017
  122,523,516
  122,524,300
  122,526,621
  122,528,731
  122,528,867
  122,533,626
  122,533,797
  122,539,112
  122,540,973
  122,541,180
  122,541,401
  122,541,489
  122,541,638
  122,542,595
  122,543,792
  122,545,810
  122,546,786
  122,546,920
  122,547,289
  122,547,523
  122,547,973
  122,548,848
  122,549,000
  122,549,079
  122,549,080
A
-
-
G
A
C
2
4
T/A
3
G
A
T
G
T
A
A
A
G
G
C
G
T
C
-
T
-
C
T
-
A
G
C
-
C
G
T
C
G
G
A
T
A
A
T
C
A
A
C
T
C
G
T
C
G
C
G
T
C
T
C
C
A
G
T
G
C
-
G
-
G
G
-
T
-
C
-
T
T
A
-
C
G
C
28
-
A
T
T
A
18
A
21
2
C
2
T
T
A
21
10
2
C
C
A
C
A
G
-
-
-
T
G
C
C
A
10/-
G
G
C
A
C
T
A
13
G
T
G
G
G
-
C
G
-
A
G
G
T
T
T
T
T
T
T
T
A
T
A
T
A
A
A
A
A
A
C
-
C
C
C
T
G
T
A
G
T
T
C
G
G
A
C
A
2
C
4
A
A/TA
G
T
T
T
G
T
-
-
A
G
A
3
5
A
G
T
C
A
G
T
A
A
C
G
T
A
G
A
C
A
A
G
T
G
C
T
G
C
A
A
G
C
T
-
G
A
T
T
T
T
T
T
T
G
C
A
G/C
T/A
C
A
A
A
T
G
G
A
3
T
A
C
G
T
T
C
T
A
T
G
A
A
G
C
A
T
A
A
T
G
C
G
A
A
-
T
C
G
T
T
G
G
G
G
C
T
A
G
A
-
-/T
G
A
A
G
A
32
G
G
2
-
A
A
A
G
A
8/-
A
G
-
A
A