Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 134,579 (bp)   Positions: 349
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
F344/Stm (2019) 
.948
.0
.004
.049
--
.966
.091
.012
.445
.001
.002
.038
.016
.019
.274
--
--
.042
--
--
.027
.018
.004
.007
.0
.001
.003
.005
.003
.033
.003
.004
.021
.06
.346
.002
.021
.141
.005
.045
.002
.155
.003
.988
.434
.095
.016
.601
.002
.006
.002
.013
.298
.0
.0
.024
.009
.007
.695
.0
.979
.918
.002
.0
.023
--
--
--
--
--
.086
.003
.007
.025
.0
.0
.006
.05
.001
--
--
--
--
.131
.064
.055
.007
.055
.017
.024
--
--
--
--
--
--
.132
.141
.149
.152
.144
.135
.271
.009
.086
.009
--
--
--
.024
.018
--
--
--
.007
.0
.004
.013
.009
.017
.02
.005
.027
.069
.045
.059
.127
.006
.596
.002
.097
.0
.003
.09
--
--
.009
.239
.304
.063
.071
.11
.032
.001
.001
.0
.027
--
.002
.013
.004
--
.003
.286
.009
--
--
.026
.005
.003
.002
.001
.359
.001
.002
.066
.001
.0
.0
.0
.0
.63
.021
.513
.262
.004
.234
.004
--
--
--
--
--
.005
.0
.001
.014
.001
.104
.579
.248
--
.392
.396
.002
.049
.144
.113
.008
.0
.001
.072
.122
.13
.288
.0
.0
.001
.002
.001
.02
.002
.0
.003
.006
.005
.028
.05
.01
.005
.026
.024
.003
.001
.003
.0
.002
.0
.0
.005
.011
.029
.044
.037
.003
.013
.002
.049
.029
.023
.002
.0
.001
.002
.003
.0
--
.051
--
.012
.001
.005
.006
.012
.004
.003
.005
.008
.008
.007
.037
.163
.348
.146
.035
.069
.11
.24
.538
.132
.015
.0
.005
.032
--
--
--
--
.029
.001
.014
.001
.09
.005
.0
.021
.001
--
--
.067
.022
.019
.0
.011
.0
1.0
.0
.0
.001
.005
.118
.001
.118
.158
.0
.002
.0
.001
.0
.001
.012
.0
.041
.011
.0
.0
.025
.005
.074
.006
.064
.001
.056
.003
.044
.934
--
--
.001
.0
.15
.003
.064
.071
.117
.021
.001
.196
.003
.992
.91
.03
.042
.005
.001
.012
.0
.0
.005
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
Hip1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
A
G
G
A
-
C
G
T
A
C
C
A
C
C
G
11
A
T
-
T
T
T
T
T
-
A
C
C
C
T
T
-
C
T
C
C
A
-
9
G
-
C
-
-
38
C
C
C
G
T
54
C
A
T
G
A
A
T
T
C
C
T
A
T
T
-
-
-
-
G
A
A
T
-
53
C
-
-
G
11
-
-
T
C
G
-
G
T
G
A
C
-
T
T
G
-
C
C
C
G
G
G
A
G
A
C
-
2
6
T
T
T
G
T
G
T
-
-
C
-
G
A
6
T
T
T
T
C
T
T
A
T
T
T
C
T
-
G
G
G
C
C
A
C
G
G
T
C
G
G
T
A
C
G
A
C
-
G
G
A
T
G
T
G
-
-
T
C
G
A
A
6
T
G
G
T
C
A
T
A
A
T
G
G
G
C
A
C
T
C
G
T
T
G
C
A
G
T
4
T
C
G
C
G
C
A
G
A
C
C
-
A
A
T
-
A
2
T
T
16
T
C
A
G
T
C
C
A
C
T
T
C
-
C
T
T
A
-
-
3
G
G
-
G
T
-
53
G
G
G
T
T
G
A
A
G
A
A
G
G
T
-
G
G
A
A
G
C
G
A
C
C
C
G
T
2
-
-
C
G
G
C
-
T
C
-
T
A
A
-
A
T
T
T
A
A
T
T
G
-
A
C
2
18
A
C
C
G
T
G
A
G
G
A
T
C
G
C
G
A
A
T
A
-
T
C
G
A
A
A
G
G
-
T
-
A
A
-
A
53
T
-
G
C
C
C
G
A
C
  24,181,428
  24,181,458
  24,181,501
  24,182,840
  24,182,963
  24,183,775
  24,184,070
  24,184,276
  24,184,535
  24,186,564
  24,187,620
  24,187,673
  24,188,658
  24,189,649
  24,190,249
  24,190,709
  24,190,825
  24,192,635
  24,192,816
  24,192,894
  24,193,244
  24,193,289
  24,193,367
  24,193,975
  24,194,393
  24,194,804
  24,194,853
  24,194,859
  24,195,476
  24,195,626
  24,195,847
  24,195,854
  24,196,078
  24,196,122
  24,196,466
  24,196,623
  24,196,707
  24,197,418
  24,197,589
  24,197,807
  24,197,888
  24,198,114
  24,198,146
  24,198,351
  24,198,807
  24,198,972
  24,199,036
  24,199,302
  24,199,396
  24,199,414
  24,199,472
  24,199,527
  24,199,574
  24,199,713
  24,199,714
  24,199,981
  24,200,587
  24,200,834
  24,200,856
  24,201,057
  24,201,422
  24,201,443
  24,201,666
  24,201,746
  24,201,923
  24,202,003
  24,202,019
  24,202,021
  24,202,031
  24,202,085
  24,202,456
  24,202,720
  24,202,984
  24,203,098
  24,203,601
  24,203,877
  24,204,541
  24,204,644
  24,204,704
  24,204,950
  24,205,055
  24,205,107
  24,205,151
  24,205,452
  24,206,006
  24,206,390
  24,206,905
  24,207,289
  24,207,375
  24,207,434
  24,208,032
  24,208,098
  24,208,222
  24,208,413
  24,208,575
  24,208,646
  24,208,820
  24,208,823
  24,208,826
  24,208,857
  24,208,860
  24,208,863
  24,208,918
  24,209,656
  24,209,998
  24,210,159
  24,210,405
  24,210,490
  24,210,508
  24,211,529
  24,211,558
  24,211,895
  24,211,924
  24,212,729
  24,212,955
  24,213,599
  24,213,735
  24,213,741
  24,214,088
  24,214,099
  24,214,177
  24,214,605
  24,215,103
  24,215,158
  24,215,205
  24,215,401
  24,215,527
  24,215,602
  24,219,076
  24,219,171
  24,219,248
  24,219,319
  24,219,376
  24,219,777
  24,219,892
  24,219,910
  24,220,090
  24,220,187
  24,220,345
  24,220,370
  24,220,610
  24,220,631
  24,220,759
  24,220,843
  24,221,070
  24,221,585
  24,221,610
  24,222,070
  24,222,371
  24,222,373
  24,222,621
  24,222,790
  24,222,967
  24,223,123
  24,223,231
  24,223,318
  24,223,331
  24,223,457
  24,223,631
  24,223,636
  24,223,688
  24,223,852
  24,224,301
  24,224,343
  24,224,762
  24,225,031
  24,225,118
  24,225,330
  24,225,968
  24,226,038
  24,226,309
  24,226,697
  24,227,231
  24,228,607
  24,228,611
  24,229,514
  24,232,154
  24,232,387
  24,232,603
  24,235,370
  24,235,377
  24,236,166
  24,236,168
  24,236,853
  24,239,121
  24,239,627
  24,241,853
  24,242,017
  24,242,768
  24,243,597
  24,244,882
  24,245,771
  24,246,694
  24,246,695
  24,246,863
  24,247,388
  24,248,786
  24,250,342
  24,253,070
  24,257,168
  24,257,564
  24,258,404
  24,258,408
  24,258,416
  24,259,090
  24,259,127
  24,259,136
  24,259,148
  24,259,150
  24,259,175
  24,259,293
  24,259,368
  24,259,376
  24,259,667
  24,259,787
  24,259,794
  24,259,894
  24,259,897
  24,259,909
  24,259,915
  24,260,077
  24,260,823
  24,262,032
  24,262,099
  24,263,426
  24,263,861
  24,263,896
  24,265,316
  24,265,695
  24,265,843
  24,266,062
  24,266,191
  24,266,284
  24,266,985
  24,267,443
  24,268,397
  24,269,875
  24,270,025
  24,270,026
  24,270,029
  24,270,110
  24,270,118
  24,270,154
  24,270,213
  24,270,226
  24,270,628
  24,271,128
  24,272,235
  24,272,826
  24,273,276
  24,273,359
  24,274,938
  24,274,939
  24,274,962
  24,275,078
  24,275,079
  24,275,081
  24,275,107
  24,275,132
  24,275,144
  24,275,229
  24,275,580
  24,276,723
  24,276,757
  24,276,771
  24,276,776
  24,276,778
  24,276,783
  24,276,791
  24,276,824
  24,277,330
  24,278,230
  24,279,114
  24,279,143
  24,283,100
  24,283,817
  24,283,980
  24,284,059
  24,284,254
  24,285,294
  24,286,250
  24,286,334
  24,286,404
  24,286,982
  24,287,136
  24,287,229
  24,287,240
  24,287,557
  24,287,595
  24,287,656
  24,287,688
  24,287,715
  24,288,226
  24,289,168
  24,289,377
  24,289,456
  24,289,761
  24,290,126
  24,290,185
  24,290,725
  24,290,816
  24,291,532
  24,292,081
  24,292,088
  24,292,434
  24,292,488
  24,292,708
  24,292,718
  24,292,790
  24,292,885
  24,292,972
  24,293,079
  24,293,283
  24,293,399
  24,293,607
  24,293,693
  24,294,987
  24,295,470
  24,295,511
  24,300,058
  24,301,068
  24,301,671
  24,301,720
  24,301,915
  24,303,162
  24,304,364
  24,305,167
  24,305,235
  24,305,297
  24,305,323
  24,306,359
  24,306,640
  24,307,863
  24,307,871
  24,307,990
  24,308,214
  24,308,580
  24,308,750
  24,308,931
  24,309,326
  24,309,431
  24,310,152
  24,310,239
  24,310,565
  24,311,025
  24,312,293
  24,312,312
  24,312,360
  24,313,502
G
A
A
T
G
T
A
C
-
A
T
C
A
T
A
-
G
-
-/C
A
G
C
C
C
8
G
T
G
T
C
C
T
T
C
T
A
T
8
-
A
4
T
GT/G
T
-
T
T
T
T
A
-
T
G
C
A
G
G
C
C
T
T
A
G
A
C
2
2
8
28
A
G
C
C
G
-
T
5
A
A
-
4
11
C
T
-
A
A
C
A
T
T
A
C
C
C
T
T
T
T
T
T
T
G
T
G
T
A
-
-
G
C
C
A
A
T
C
14
5
T
A
A
G
-
C
C
C
C
A
C
C
G
C
-
C
T
C
2
A
A
T
A
T
G
G
A
A
C
T
A
A
C
A/G
T
A
G
G
12
A
C
T
C
T
A
C
2
2
C
G
A
G
C
-
C
C
C
C
C/A
G
C
T
T
A
A
C
A
T
G
T
C
T
A
-
C
A
T
G
-
C
-
C
T
A
T
A
T
G
A
C
A
T
12
G
G
C
2
G
-
C
C
-
G
T
G
A
C
T
T
C
T
C
C
T
T
T
C
C
G
2
A
-
A
A
T
A
C
2
53/-
C
T
A
C
C
A
C
G
A
G
G
A
C
G
-/T
A
-
C
G
C
T
T
C
A
T
T
A
G
-
4
4
T
A
C
A
T
G
T
2
C
G
T
T
T
C
G
C
G
G
C
C
T
11
G
A
-
-
G
T
T
A
C
A
G
A
-
G
C
T
A
T
C
G
G
C
A/-
A
A
G
A
A/-
G
G
C
A
T/T
C
A
C
G
C
G
-
G
A
T
T
A
T
A
G
T