Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 295,556 (bp)   Positions: 260
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
MNS/Gib (RGD) 
1.0
.988
.914
.004
.975
.958
.102
.001
.0
.01
.002
.944
.017
.001
.597
.001
.01
.983
.681
.441
.843
.866
.0
.987
.001
.002
.003
.049
.018
.001
.0
.0
.141
.055
.071
.214
.526
.0
.001
.004
.0
.082
.0
.049
.018
.044
.032
.0
.0
.015
--
.007
.013
.007
.009
.0
.346
.059
.0
.003
.0
.001
.007
.007
.0
.002
--
.749
.995
.01
.014
.005
.774
.243
.02
.001
.0
.999
1.0
.0
--
--
--
--
--
--
--
.008
.0
.016
.002
.006
.001
.0
.015
.09
.018
.019
.002
.874
.006
.568
.005
.002
.007
.019
.573
.565
.557
.005
.004
.001
.969
.998
.002
.005
.001
.018
.017
.025
--
.009
.123
.218
.0
.009
.001
.004
.003
.008
.001
.001
.0
.001
.0
.006
.026
.0
.001
1.0
1.0
.39
1.0
.003
.979
.196
.973
.029
.669
.001
.002
.016
.0
.0
.014
.002
.019
.178
--
--
--
.0
--
.073
.681
.179
.056
.168
.005
.006
.005
.995
.022
--
--
--
--
--
.036
.002
--
.006
.001
.0
.008
.976
.995
1.0
.998
.0
.447
.089
--
--
--
.019
.018
.021
.344
.04
.004
.016
.148
.002
.001
.002
.001
.007
.102
.147
.15
.001
.018
--
.026
--
.997
.042
.0
.0
.091
.044
.013
.062
.022
.048
.0
.001
.995
.003
.0
.016
.134
.002
.746
.006
.001
.026
.005
.0
.008
.005
.002
.287
.996
.513
.621
.079
.001
.697
.002
--
.004
.003
.008
.69
--
.822
.004
.93
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
LOC108350367
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
Gtdc1
G
C
T
C
T
T
C
C
A
C
G
A
C
C
T
C
C
C
T
G
C
A
A
A
A
A
C
T
T
G
T
A
C
C
G
A
C
C
A
C
A
G
A
A
G
C
C
T
A
A
C
G
C
G
C
T
A
C
C
C
C
C
C
C
G
A
C
G
T
A
T
T
C
C
G
C
A
C
T
A
A
T
C
C
T
G
A
G
C
T
T
T
T
C
A
G
C
G
A
T
C
C
C
T
T
T
T
A
C
C
T
T
T
A
A
C
C
A
C
A
C
T
T
A
A
C
A
C
C
G
T
T
G
C
G
A
T
C
G
G
T
T
A
C
G
C
T
C
G
G
G
C
C
G
A
T
T
G
C
T
G
C
T
T
A
T
T
A
T
A
A
A
G
T
G
A
G
G
C
G
A
C
G
C
C
A
C
T
G
T
T
T
G
C
A
T
C
T
A
T
C
A
C
A
T
T
C
G
C
T
C
C
T
C
G
A
T
A
C
A
G
A
G
A
G
A
G
G
C
A
C
A
A
A
A
C
A
C
C
A
G
A
C
A
T
T
T
C
C
C
C
T
A
G
A
G
T
A
T
T
  29,410,870
  29,411,795
  29,411,950
  29,412,115
  29,412,746
  29,412,748
  29,412,955
  29,413,040
  29,413,135
  29,413,182
  29,413,729
  29,413,831
  29,414,008
  29,414,295
  29,414,305
  29,414,993
  29,415,278
  29,416,345
  29,418,334
  29,418,368
  29,418,547
  29,418,559
  29,421,240
  29,422,620
  29,424,758
  29,424,936
  29,425,527
  29,425,671
  29,425,877
  29,427,058
  29,427,246
  29,428,142
  29,428,350
  29,428,362
  29,430,592
  29,430,896
  29,431,393
  29,433,232
  29,433,317
  29,433,678
  29,434,292
  29,434,371
  29,434,737
  29,436,085
  29,436,979
  29,439,488
  29,441,555
  29,441,780
  29,445,145
  29,447,391
  29,448,075
  29,451,068
  29,451,676
  29,451,863
  29,456,096
  29,456,711
  29,458,792
  29,458,823
  29,460,360
  29,460,448
  29,460,470
  29,460,508
  29,460,542
  29,460,885
  29,460,903
  29,460,980
  29,461,130
  29,462,209
  29,462,241
  29,464,008
  29,465,977
  29,467,251
  29,467,883
  29,467,899
  29,471,465
  29,471,606
  29,473,421
  29,474,082
  29,474,875
  29,476,110
  29,477,698
  29,478,728
  29,480,423
  29,481,702
  29,482,261
  29,482,481
  29,482,918
  29,483,720
  29,485,514
  29,486,343
  29,486,499
  29,487,975
  29,489,081
  29,489,257
  29,489,400
  29,489,634
  29,492,477
  29,492,560
  29,496,041
  29,497,175
  29,498,143
  29,498,703
  29,499,943
  29,500,326
  29,500,632
  29,500,813
  29,501,197
  29,501,198
  29,501,453
  29,502,868
  29,503,411
  29,503,665
  29,503,717
  29,503,966
  29,504,195
  29,504,828
  29,506,163
  29,506,790
  29,507,422
  29,507,479
  29,509,893
  29,513,929
  29,514,332
  29,516,062
  29,516,814
  29,517,547
  29,519,361
  29,520,376
  29,520,433
  29,521,331
  29,522,192
  29,524,414
  29,526,005
  29,529,019
  29,529,087
  29,529,561
  29,529,587
  29,530,212
  29,530,319
  29,531,784
  29,533,973
  29,541,060
  29,541,795
  29,541,888
  29,543,189
  29,544,254
  29,549,263
  29,549,271
  29,549,308
  29,550,772
  29,553,977
  29,556,059
  29,556,744
  29,559,289
  29,560,496
  29,560,883
  29,567,701
  29,574,480
  29,574,777
  29,575,933
  29,577,557
  29,581,035
  29,583,094
  29,583,690
  29,585,643
  29,586,465
  29,587,440
  29,587,550
  29,590,495
  29,590,530
  29,590,953
  29,591,780
  29,593,705
  29,594,040
  29,594,328
  29,594,455
  29,595,245
  29,596,343
  29,599,528
  29,600,808
  29,602,181
  29,604,476
  29,604,485
  29,604,875
  29,605,560
  29,607,342
  29,607,426
  29,607,540
  29,609,236
  29,610,054
  29,612,279
  29,613,107
  29,618,182
  29,620,218
  29,621,518
  29,626,947
  29,627,059
  29,627,491
  29,628,943
  29,631,224
  29,632,286
  29,634,933
  29,637,503
  29,637,717
  29,637,721
  29,637,863
  29,638,378
  29,638,420
  29,639,803
  29,639,859
  29,639,860
  29,639,890
  29,640,017
  29,640,407
  29,647,949
  29,648,497
  29,651,165
  29,651,595
  29,652,608
  29,652,673
  29,658,200
  29,658,666
  29,659,071
  29,659,316
  29,659,905
  29,660,549
  29,661,769
  29,662,478
  29,662,959
  29,663,361
  29,663,467
  29,664,302
  29,664,516
  29,664,737
  29,664,873
  29,665,114
  29,666,470
  29,666,871
  29,667,309
  29,668,214
  29,671,529
  29,672,688
  29,672,704
  29,674,627
  29,674,732
  29,674,823
  29,674,833
  29,675,123
  29,675,360
  29,681,568
  29,683,403
  29,691,810
  29,694,966
  29,695,187
  29,695,394
  29,695,495
  29,697,384
  29,701,973
  29,703,332
  29,704,822
C
G
C
T
C
C
T
T
T
A
A
G
A
A
C
T
T
T
C
A
T
G
G
C
G
G
T
C
A
A
C
T
T
T
C
G
T
T
G
T
G
A
G
G
A
A
T
C
G
A/G
G
A
T
A
A
A
G
T
T
G
A
T
A
A
A
T
G
A
G
G
C
C
T
T
A
T
C
G
C
G
G
C
T
A
C
A
G
C
T
C
C
C
C
A
G
A
T
A
C
C
T
T
T
C
C
G
A
G
T
T
C
G
C
G
G
T
T
T
G
C
A
C
C
G
G
T
G
T
A
C
C
C
A
T
T
G
C
T
A
A
G
C
C
A
A
T
C
A
A
C
A
T
T
T
C
C
A
A
G
C
A
T
C
C
G
C
C
G
C
G
G
G
A
C
C
G
C
C
T
T
G
T
A
T
T
G
T
C
A
A
G
C
C
T
C
A
T
G
G
A
A
G
A
G
C
A
T
C
G
A
T
A
C
G
A
T
C
C
G
G
A
C
C
G
C
G
C
A
T
G
T
G
G
C
C
T
G
T
T
T
C
G
A
T
C
C
G
A
T
G
T
A
A/C
G/A
G
G/A
C
G
G
C