Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 58,406 (bp)   Positions: 167
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
BXH3/CubMcwi (2020) 
.005
--
.002
.085
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.068
.006
.101
.016
.036
.239
.337
.002
.372
.001
.021
.013
.499
.047
.034
.021
.209
.417
.076
.078
.002
.001
.0
.014
.0
.007
.014
.0
.0
.0
.145
.0
.042
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.001
.001
.425
.0
.0
.007
.001
.005
.019
.847
.784
.013
.017
.115
.775
.083
.362
.016
.214
.68
.925
.004
.143
.001
.016
--
--
--
--
--
--
.08
.085
.106
.967
.288
.003
.002
.0
.025
.027
.024
.005
.001
.001
.033
.472
.029
.007
--
--
--
.956
--
.998
.979
.007
.993
.097
.937
.028
.991
.002
1.0
.291
.983
--
.002
.003
.011
.077
.046
.003
.466
.093
.204
.001
.409
.052
.009
.004
.027
.001
.0
.0
.0
.005
.0
.174
.001
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
Cenpc
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
T
-
C
2
C
-
-
C
G
C
C
C
T
G
C
T
T
T
A
A
C
G
G
G
-
G
T
C
T
G
C
A
C
-
4
G
A
C
-
-
C
T
C
G
-
C
C
C
T
A
T
C
G
G
T
G
T
-
-
2
G
A
A
T
G
T
C
G
-
-
-
G
A
A
T
T
-
G
G
-
-
G
C
A
A
G
C
G
C
A
A
G
T
C
C
4
A
T
C
C
A
C
G
G
G
C
G
T
G
G
A
G
T
C
C
T
T
T
T
T
C
T
T
-
T
4
C
C
A
G
T
C
A
A
A
G
T
T
G
A
G
C
A
G
A
9
T
14
A
G
A
12
C
G
G
G
C
T
G
G
C
A
T
A
C
A
  23,612,251
  23,617,570
  23,618,480
  23,619,948
  23,621,108
  23,621,188
  23,621,727
  23,621,785
  23,622,990
  23,623,032
  23,623,041
  23,623,103
  23,624,017
  23,624,022
  23,624,100
  23,624,198
  23,624,385
  23,625,222
  23,625,670
  23,625,678
  23,625,685
  23,625,693
  23,625,771
  23,625,776
  23,625,787
  23,626,803
  23,629,412
  23,629,876
  23,630,468
  23,631,192
  23,632,234
  23,633,154
  23,633,184
  23,633,844
  23,634,126
  23,634,194
  23,634,468
  23,634,699
  23,635,298
  23,636,618
  23,636,905
  23,637,316
  23,637,445
  23,637,650
  23,637,684
  23,638,749
  23,638,823
  23,638,825
  23,639,184
  23,639,271
  23,639,397
  23,639,600
  23,640,252
  23,640,256
  23,640,370
  23,642,499
  23,642,763
  23,643,044
  23,643,246
  23,643,279
  23,643,600
  23,644,236
  23,644,251
  23,644,433
  23,644,459
  23,644,519
  23,644,556
  23,644,660
  23,644,676
  23,644,678
  23,644,680
  23,644,682
  23,644,683
  23,645,908
  23,646,115
  23,646,243
  23,646,391
  23,646,552
  23,646,553
  23,646,593
  23,647,183
  23,647,188
  23,648,029
  23,648,258
  23,648,262
  23,648,528
  23,649,000
  23,649,193
  23,649,487
  23,649,558
  23,649,727
  23,650,391
  23,650,844
  23,650,902
  23,651,166
  23,651,830
  23,651,886
  23,652,041
  23,652,087
  23,652,193
  23,652,341
  23,652,393
  23,652,507
  23,652,565
  23,652,587
  23,652,614
  23,652,825
  23,652,849
  23,653,057
  23,653,232
  23,653,270
  23,653,402
  23,653,491
  23,653,548
  23,653,616
  23,653,669
  23,653,908
  23,654,556
  23,654,622
  23,654,774
  23,654,787
  23,654,847
  23,654,967
  23,655,002
  23,655,105
  23,655,608
  23,655,653
  23,655,702
  23,655,706
  23,655,736
  23,656,830
  23,657,239
  23,657,319
  23,657,675
  23,657,703
  23,657,748
  23,657,782
  23,657,862
  23,658,033
  23,658,305
  23,658,779
  23,659,214
  23,659,814
  23,660,170
  23,663,960
  23,664,632
  23,665,213
  23,666,182
  23,667,038
  23,667,162
  23,667,235
  23,667,996
  23,668,171
  23,668,296
  23,668,346
  23,668,752
  23,668,900
  23,668,952
  23,669,025
  23,669,456
  23,669,544
  23,669,601
  23,669,604
  23,669,666
  23,670,079
  23,670,197
  23,670,288
A
A
-/T
T
-
A
T
A
C/A
G/C
C/T
C/T
T
C
C
T
C
C
T/A
A/T
A/T
C/A
G/T
G/A
G/A
C
T
A
T
-
A
T
G
T
4
-
A
G
T
T
T
T
G
T
A
T
A
A
T
C
G
G
T
T
A
G
A
A
A
T
-
A
G
C
C
C
C
T
-
2
5
3
A
G
T
-
C
A
A
A
2
6
A
T
T
-
A
T
T
T
G
G
C
C
T
T
-
G
G
T
T
G
T
G/C
G/A
G/T
T
C
C
G/A
A
G
G/A
T/G
G
T
T/C
C
C
A
G
T
A
C
13
C
-
T
T
C
C
G
T
C
G
G
C
C
C
A
G
A
T
G
A
G
-
C
-
G
A
G
-
T
A
A
A
T
C
T
A/CT
-
-
C
G
T
G