Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 89,225 (bp)   Positions: 215
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
LEW/NCrlBR (RGD) 
.007
.005
.0
.001
.01
.943
.005
.382
.001
--
.174
.001
.002
.004
.995
.007
.002
.002
.0
.198
.0
.066
.069
.013
.031
.001
.011
.087
.0
.003
.085
.487
.001
.001
.006
.007
.002
.04
.004
.019
.0
.005
.001
.042
.0
.003
.152
.224
.036
.138
.015
.053
.053
.018
.002
.005
.002
.064
.08
.056
.002
.005
.007
.012
.001
.001
.009
.03
.004
.01
.167
.012
.004
.024
.002
.001
.16
.001
.003
.087
.019
.003
.049
.042
.001
.003
.005
.007
.04
.011
.116
.081
.021
.058
.026
.003
.03
.006
.012
.005
.496
.247
.255
.243
.13
.428
.032
.378
.004
.002
.036
.001
.0
.006
.0
.0
.0
.002
.061
.001
.027
.223
.001
.088
.007
.038
.471
.234
.004
.007
.004
.249
.0
.989
.001
.124
.002
.025
.0
.003
.0
.156
.001
.009
.743
.531
.001
.882
.067
.094
.0
.0
.0
1.0
.826
.0
.004
.0
.005
.027
.036
.0
.273
.0
.001
.0
.0
.004
.026
.006
.045
.047
.013
.007
1.0
.877
.778
1.0
.753
.001
.024
1.0
.001
.007
.0
.001
.001
.002
.0
.003
.002
.0
.001
.003
.017
.002
.003
.001
.443
.866
.0
.954
.001
.0
.0
.002
.503
.022
.009
.003
.037
.012
.915
.007
.097
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
Ccdc39
A
A
G
G
C
G
A
C
G
C
T
G
C
G
G
G
C
T
T
C
A
G
A
A
G
G
A
C
T
C
G
G
G
A
T
A
T
A
A
G
T
G
T
A
C
T
A
G
T
G
A
G
C
C
A
T
G
G
C
T
T
G
C
T
C
A
T
A
A
A
T
T
C
G
T
G
G
G
C
A
A
G
A
T
C
T
A
C
C
A
C
A
C
A
A
A
C
T
G
A
C
A
G
G
C
A
A
T
G
A
A
C
A
G
C
A
G
C
A
A
T
T
T
T
C
A
A
G
G
T
G
C
G
T
A
C
T
T
T
T
G
A
C
C
C
T
C
T
C
G
G
T
C
T
T
T
C
G
G
G
A
G
G
T
G
G
G
A
G
T
A
A
T
C
G
T
C
A
A
A
A
T
A
C
T
C
T
G
T
G
C
G
C
A
C
C
A
G
C
A
T
T
G
T
T
G
G
C
G
C
A
C
C
G
C
  120,278,706
  120,278,885
  120,279,092
  120,280,898
  120,280,920
  120,281,918
  120,283,016
  120,283,685
  120,285,660
  120,288,545
  120,292,903
  120,294,789
  120,295,045
  120,298,163
  120,298,332
  120,298,727
  120,299,142
  120,299,257
  120,299,296
  120,300,352
  120,300,727
  120,304,977
  120,306,953
  120,307,250
  120,307,409
  120,307,741
  120,309,023
  120,310,064
  120,310,412
  120,311,408
  120,312,298
  120,313,896
  120,314,178
  120,314,297
  120,314,301
  120,314,351
  120,314,424
  120,314,444
  120,314,514
  120,315,149
  120,315,376
  120,315,660
  120,315,931
  120,315,943
  120,316,163
  120,316,714
  120,317,122
  120,317,377
  120,317,910
  120,318,051
  120,318,177
  120,318,198
  120,318,609
  120,318,693
  120,318,942
  120,319,181
  120,319,271
  120,319,519
  120,319,561
  120,319,576
  120,319,611
  120,319,937
  120,319,972
  120,320,070
  120,320,377
  120,320,378
  120,320,443
  120,320,739
  120,320,838
  120,320,855
  120,321,226
  120,321,265
  120,321,394
  120,321,421
  120,321,463
  120,321,468
  120,321,599
  120,321,608
  120,321,612
  120,321,649
  120,321,680
  120,321,795
  120,321,841
  120,322,126
  120,322,190
  120,322,276
  120,322,293
  120,322,298
  120,322,410
  120,322,419
  120,322,604
  120,322,609
  120,322,690
  120,322,708
  120,323,199
  120,323,236
  120,323,326
  120,323,428
  120,323,696
  120,323,775
  120,323,832
  120,323,841
  120,323,863
  120,324,034
  120,324,060
  120,324,178
  120,324,372
  120,324,593
  120,324,712
  120,324,728
  120,324,813
  120,324,931
  120,325,049
  120,325,148
  120,325,198
  120,325,670
  120,325,970
  120,325,971
  120,326,027
  120,326,186
  120,326,800
  120,327,127
  120,327,335
  120,327,804
  120,327,941
  120,328,252
  120,328,411
  120,328,418
  120,328,508
  120,328,699
  120,329,053
  120,329,059
  120,329,100
  120,329,440
  120,329,899
  120,330,914
  120,331,026
  120,331,150
  120,331,228
  120,331,309
  120,331,979
  120,332,379
  120,332,726
  120,332,772
  120,332,809
  120,332,841
  120,332,912
  120,332,921
  120,332,957
  120,333,098
  120,333,172
  120,333,515
  120,333,575
  120,334,105
  120,334,366
  120,334,832
  120,334,837
  120,335,285
  120,335,718
  120,336,146
  120,337,054
  120,337,625
  120,338,340
  120,339,656
  120,340,180
  120,340,485
  120,340,508
  120,340,518
  120,340,613
  120,340,639
  120,341,769
  120,342,090
  120,342,124
  120,342,328
  120,343,276
  120,343,345
  120,343,580
  120,343,691
  120,343,717
  120,344,630
  120,344,752
  120,345,344
  120,346,106
  120,346,246
  120,347,869
  120,348,069
  120,348,257
  120,348,350
  120,348,849
  120,349,403
  120,349,548
  120,349,788
  120,350,175
  120,350,431
  120,350,649
  120,350,828
  120,350,831
  120,351,456
  120,351,852
  120,351,858
  120,351,881
  120,352,599
  120,354,053
  120,354,256
  120,355,098
  120,355,986
  120,361,403
  120,361,407
  120,361,891
  120,362,351
  120,362,420
  120,363,400
  120,363,798
  120,366,628
  120,366,904
G
G
C
A
T
A
G
A
T
T
G
T
T
A
A
T
T
C
G
A
G
A
G
G
A
A
G
T
C
T
A
A
A
C
G
G
G
G
G
A
C
A
A
G
T
C
G
A
C
A
C
A
T
T
G
C
A
A
T
C
C
A
A
A
G
G
C
C
G
T
A
C
T
A
C
A
A
T
T
G
G
T
G
C
T
C
G
T
G
G
G
C
T
G
G
G
G
A
A
T
T
G
C
A
T
G
C
G
A
G
T
G
G
A
T
G
C
T
G
G
A
C
C
C
T
C
C
C
A
C
A
T
C
A
G
T
C
C
C
A
A
G
G
T
T
C
G
C
T
A
C
C
T
G
C
C
T
A
A
C
G
A
A
C
A
T
A
G
C
C
C
C
C
T
A
C
T
T
C
G
G
C
T
T
C
T
C
A
C
A
T
A
T
G
T
A
G
A
T
G
G
C
A
G
C
T
A
A
T
A
T
T
T
A
G