Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 63,667 (bp)   Positions: 238
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
SHRSP/A3NCrl (2019) 
.0
.015
.195
.02
.219
.007
.04
.0
.004
.036
.037
.041
.001
.003
.002
.002
.023
.48
.093
.034
.002
.079
.001
.012
.001
.027
.001
.001
.0
.003
.001
.043
.04
.009
.134
.123
.012
.01
.025
.004
.016
.517
.037
.206
.002
.03
.081
.063
.1
.003
.043
.045
.031
.03
.003
.028
.005
.002
.126
.413
.572
.084
.023
.019
.298
.041
.106
.008
.086
.109
.268
.173
.004
.012
.0
.004
.084
.262
.218
.006
.0
.036
.171
.05
.0
.002
.001
.001
.001
.004
.008
.005
.005
.055
.05
.056
.027
.002
.05
.056
.125
.026
.169
.025
.0
.619
.001
.0
.009
.002
.004
.004
.0
.0
.004
.02
.001
.002
.0
.001
.001
.001
.0
.039
.0
.028
.009
.003
.023
.077
.017
.132
.123
.021
.008
.003
.0
.0
.0
.859
.013
.003
.207
.131
.009
.038
.01
.006
.008
.293
.021
.003
.001
.0
.0
.046
.077
.01
.008
.002
.196
.058
.036
.074
.018
.046
.001
.007
.016
.015
.001
.001
.01
.015
.008
.014
.041
.07
.45
.236
.242
.251
.131
.627
.008
.02
.001
.002
.0
.001
.001
.002
.001
.001
.001
.001
.0
.0
.008
.002
.001
.003
.001
.001
.005
.003
.007
.004
.012
.008
.001
.012
.009
.0
.001
.0
.069
--
--
--
--
--
.005
.004
.002
.007
.39
.289
.519
1.0
--
.244
.361
--
.005
.054
.024
.011
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
B3gntl1
T
G
A
A
-
A
C
C
C
G
G
A
G
C
C
-
-
T
C
A
C
G
C
C
G
C
C
G
G
G
-
C
A
C
G
A
G
C
C
T
C
8
A
-
T
A
G
C
C
T
-
C
3
4
C
C
C
G
G
A
G
T
T
A
G
-
G
G
G
-
A
A
G
-
G
G
C
T
G
A
A
7
G
C
A
2
T
G
G
T
A
C
C
-
C
-
G
T
C
7
T
G
A
C
A
A
C
T
A
A
G
2
T
A
G
A
A
A
A
G
T
T
A
-
G
-
C
A
T
T
T
C
A
T
C
G
A
T
A
T
A
A
T
G
A
A
A
C
T
T
-
-
-
G
C
G
T
-
G
2
C
G
T
C
G
T
20
C
C
-
C
A
5
C
A
A
-
2
2
A
C
-
2
-
C
-
G
-
C
-
G
C
3
C
2
A
A
G
G
C
A
3
T
C
-
-
8
3
8
2
C
-
C
G
-
G
T
-
-
T
2
2
A
-
C
C
T
A
C
A
7
A
4
T
A
9
G
-
  110,800,850
  110,801,359
  110,801,585
  110,801,615
  110,802,270
  110,802,357
  110,802,739
  110,803,528
  110,803,536
  110,804,918
  110,805,445
  110,806,221
  110,806,600
  110,807,345
  110,807,468
  110,807,714
  110,808,304
  110,808,595
  110,808,867
  110,809,223
  110,809,849
  110,810,382
  110,810,411
  110,810,686
  110,810,762
  110,812,731
  110,814,086
  110,814,253
  110,815,957
  110,816,031
  110,816,940
  110,817,022
  110,817,205
  110,817,249
  110,817,295
  110,817,297
  110,817,308
  110,817,322
  110,817,378
  110,817,585
  110,817,607
  110,817,790
  110,818,276
  110,818,610
  110,818,758
  110,818,864
  110,819,283
  110,819,477
  110,819,485
  110,819,580
  110,820,522
  110,820,772
  110,820,854
  110,821,134
  110,821,382
  110,821,419
  110,821,539
  110,821,603
  110,821,870
  110,821,887
  110,821,900
  110,822,765
  110,823,061
  110,823,068
  110,823,117
  110,823,410
  110,823,451
  110,823,801
  110,823,846
  110,823,854
  110,823,962
  110,824,011
  110,824,469
  110,824,473
  110,824,686
  110,825,156
  110,825,220
  110,825,230
  110,825,235
  110,825,334
  110,825,410
  110,825,484
  110,825,555
  110,825,936
  110,825,992
  110,826,209
  110,826,355
  110,826,367
  110,826,445
  110,826,531
  110,826,587
  110,827,033
  110,827,034
  110,827,115
  110,827,120
  110,827,211
  110,827,239
  110,827,379
  110,827,441
  110,827,549
  110,827,615
  110,828,077
  110,828,163
  110,828,227
  110,828,305
  110,828,333
  110,828,953
  110,829,105
  110,829,604
  110,829,644
  110,830,314
  110,830,349
  110,830,377
  110,830,491
  110,830,602
  110,830,656
  110,830,767
  110,830,955
  110,831,246
  110,831,273
  110,831,340
  110,831,360
  110,831,509
  110,831,760
  110,831,887
  110,831,979
  110,832,175
  110,832,233
  110,832,256
  110,832,353
  110,833,009
  110,833,318
  110,833,322
  110,833,767
  110,833,961
  110,834,431
  110,834,516
  110,834,670
  110,834,721
  110,835,101
  110,836,281
  110,836,353
  110,838,577
  110,838,692
  110,839,628
  110,840,464
  110,841,273
  110,841,825
  110,841,826
  110,841,911
  110,841,937
  110,841,943
  110,841,985
  110,842,004
  110,842,005
  110,842,013
  110,842,034
  110,842,064
  110,842,078
  110,842,131
  110,842,159
  110,842,162
  110,842,168
  110,842,201
  110,842,204
  110,842,213
  110,842,319
  110,842,364
  110,842,369
  110,842,375
  110,842,386
  110,842,396
  110,842,416
  110,842,508
  110,842,523
  110,842,529
  110,842,536
  110,842,554
  110,842,569
  110,842,579
  110,842,580
  110,842,588
  110,842,605
  110,842,626
  110,842,657
  110,842,667
  110,842,681
  110,842,686
  110,842,694
  110,842,697
  110,842,709
  110,842,714
  110,842,720
  110,842,725
  110,842,740
  110,842,744
  110,842,764
  110,842,765
  110,842,769
  110,842,778
  110,842,791
  110,842,800
  110,842,817
  110,842,818
  110,842,824
  110,842,830
  110,842,832
  110,842,847
  110,842,852
  110,842,865
  110,844,954
  110,845,005
  110,845,008
  110,845,022
  110,845,054
  110,845,056
  110,846,110
  110,846,648
  110,846,649
  110,846,650
  110,846,658
  110,846,661
  110,846,858
  110,846,927
  110,848,290
  110,852,077
  110,852,523
  110,853,075
  110,853,210
  110,854,200
  110,854,871
  110,855,238
  110,855,850
  110,857,860
  110,861,332
  110,861,701
  110,862,668
  110,862,835
C
T
T
G
-/G
G
A
T
T
T
A
T
A
T
T
6
C
A
G
G
T
A
T
T
A
T
G
T
A
A
A
T
G
T
A
G
A
A
G
C
A
-
G
24
G
G
C
T
T
C
A
A
3/-
-
T
T
T
C
A
G
A
A
C
G
T
T
A
T
A
21
G
G
-
2
A
T
T
C
A
G
G
-
A
A
G
-
A
A
A
G
G
T
A
5
T
12
-
C
T
-
-
A
G
G
G
G
A
C
G
G
A
-
C
G
A
G
G
G
G
A
C
C
T
C
A
A
T
C
C
C
G
T
G
A
G
A
C
G
G
A
T
A/C
A
A
C
G
G
T
G
-
2
C
T
T
G
-
-
A
-
-
-
-
-
-
-
-
-
-
-
T
-
C
-
-
C
-
A
-
-
-
T
G
-
C
-
A
C
T
-
T
-
-
-
-
-
-
G
T
-
-
-
-
A
T
C
A
-
-
-
-
-
A
A
-
A
A
G
8
22
A
-
-
T
G
T
-
C
T
A
G
-
G
-
C
C
-
C
G