Variant Visualizer

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Rnor_6.0 assembly

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HS Founder Strains

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ACI/EurMcwi (MCW)

Sample ID:	911
Strain RGD ID	7364991
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

GK/Ox (RGD)

Sample ID:	933
Strain RGD ID	4889464
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SBN/Ygl (RGD)

Sample ID:	943
Strain RGD ID	631573
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

ACI/EurMcwi (RGD)

Sample ID:	928
Strain RGD ID	7364991
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

LE/Stm (RGD)

Sample ID:	934
Strain RGD ID	629485
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SHR/NHsd (RGD)

Sample ID:	944
Strain RGD ID	724574
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

ACI/N (MCW)

Sample ID:	920
Strain RGD ID	10000
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

LEW/Crl (RGD)

Sample ID:	935
Strain RGD ID	737932
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SHRSP/Gcrc (RGD)

Sample ID:	945
Strain RGD ID	734759
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

BBDP/Wor (RGD)

Sample ID:	929
Strain RGD ID	1598798
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

LEW/NCrlBR (RGD)

Sample ID:	936
Strain RGD ID	61104
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SR/JrHsd (MCW)

Sample ID:	918
Strain RGD ID	1582184
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories

BN/SsN (MCW)

Sample ID:	921
Strain RGD ID	61115
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

LH/MavRrrc (RGD)

Sample ID:	937
Strain RGD ID	60990
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SR/JrHsd (RGD)

Sample ID:	946
Strain RGD ID	1582184
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

Buf/N (MCW)

Sample ID:	922
Strain RGD ID	60986
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

LL/MavRrrc (RGD)

Sample ID:	939
Strain RGD ID	68077
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SS/Jr (RGD)

Sample ID:	947
Strain RGD ID	10041
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

COP/CrCrl (MCW & UW)

Sample ID:	912
Strain RGD ID	1358153
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Grant Information:	NIH (CA77876)

LN/MavRrrc (RGD)

Sample ID:	938
Strain RGD ID	61015
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SS/JrHsdMcwi (MCW)

Sample ID:	919
Strain RGD ID	61499
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Grant Information:	R01 HL089930

F344/NCrl (RGD)

Sample ID:	930
Strain RGD ID	737926
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

M520/N (MCW)

Sample ID:	924
Strain RGD ID	10024
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

SS/JrHsdMcwi (RGD)

Sample ID:	948
Strain RGD ID	61499
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

F344/NRrrc (MCW)

Sample ID:	923
Strain RGD ID	70509
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

MHS/Gib (RGD)

Sample ID:	940
Strain RGD ID	10025
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

WAG/Rij (RGD)

Sample ID:	949
Strain RGD ID	737924
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

FHH/EurMcwi (MCW)

Sample ID:	913
Strain RGD ID	629509
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

MNS/Gib (RGD)

Sample ID:	941
Strain RGD ID	10028
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

WKY/Gcrc (RGD)

Sample ID:	951
Strain RGD ID	734760
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

FHH/EurMcwi (RGD)

Sample ID:	931
Strain RGD ID	629509
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

MR/N (MCW)

Sample ID:	925
Strain RGD ID	70449
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

WKY/N (MCW)

Sample ID:	926
Strain RGD ID	70454
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health

FHL/EurMcwi (MCW)

Sample ID:	914
Strain RGD ID	1581626
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

SBH/Ygl (MCW)

Sample ID:	916
Strain RGD ID	631572
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

WKY/NCrl (RGD)

Sample ID:	950
Strain RGD ID	1358112
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

FHL/EurMcwi (RGD)

Sample ID:	932
Strain RGD ID	1581626
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

SBH/Ygl (RGD)

Sample ID:	942
Strain RGD ID	631572
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

WKY/NHsd (RGD)

Sample ID:	952
Strain RGD ID	61105
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0

GH/OmrMcwi (MCW)

Sample ID:	915
Strain RGD ID	1579686
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

SBN/Ygl (MCW)

Sample ID:	917
Strain RGD ID	631573
Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin

WN/N (MCW)

Sample ID:	927
Strain RGD ID	10045
Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health


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