chr start stop reference nuc variant nuc depth genic status zygosity variant ID 5 104465397 104465398 T TA 7 GENIC heterozygous 56491266 5 104467184 104467185 A - 15 GENIC heterozygous 55615910 5 104469862 104469863 C A 26 GENIC homozygous 55615912 5 104472075 104472076 G GT 13 GENIC heterozygous 56438101 5 104472076 104472077 T - 13 GENIC heterozygous 55615914 5 104477494 104477496 AC -- 8 GENIC heterozygous 56438105 5 104479411 104479412 A G 43 GENIC homozygous 55615918 5 104479412 104479413 A C 44 GENIC homozygous 55615920 5 104504030 104504031 T C 21 GENIC homozygous 55615936 5 104504033 104504034 T C 22 GENIC homozygous 55615938 5 104509894 104509895 T C 14 GENIC homozygous 55615942 5 104512955 104512956 A AT 25 GENIC homozygous 55615946 5 104512993 104512994 C - 26 GENIC homozygous 55615948 5 104513004 104513006 AA -- 19 GENIC homozygous 55615950 5 104513023 104513026 GGA --- 22 GENIC homozygous 55615952 5 104513036 104513038 CC -- 21 GENIC homozygous 55615954 5 104517339 104517340 C CCAGGAAAACCAT 45 GENIC homozygous 55615956 5 104523240 104523241 C CT 12 GENIC heterozygous 56491269 5 104528861 104528862 G - 4 GENIC homozygous 55615958 5 104528880 104528881 C - 18 GENIC homozygous 55615960 5 104528935 104528936 G GACAGACAGAC 2 GENIC homozygous 56491270 5 104530476 104530477 G - 23 GENIC homozygous 55615964 5 104536000 104536002 AC -- 3 GENIC homozygous 56438269 5 104536168 104536169 G T 17 GENIC homozygous 56350484 5 104490872 104490882 ATGGTCTAAG ---------- 11 GENIC heterozygous 56350482 5 104513039 104513040 C A 20 GENIC homozygous 56350483 5 104536169 104536170 A T 15 GENIC homozygous 56350485 5 104540049 104540050 A G 23 GENIC homozygous 55615966 5 104540069 104540070 G A 28 GENIC homozygous 55615968 5 104540072 104540073 G A 27 GENIC homozygous 55615970 5 104540743 104540744 G A 57 GENIC homozygous 55615972 5 104541094 104541095 C T 56 GENIC homozygous 55615974 5 104541172 104541173 T C 44 GENIC homozygous 55615976 5 104541256 104541257 A G 43 GENIC homozygous 55615978 5 104541464 104541465 A G 41 GENIC homozygous 55615980 5 104542598 104542599 C CT 21 GENIC possibly homozygous 55615982 5 104542598 104542599 C CTT 21 GENIC heterozygous 56438299 5 104543460 104543461 T G 47 GENIC homozygous 55615984 5 104543471 104543472 A G 46 GENIC homozygous 55615986 5 104543481 104543482 T C 48 GENIC homozygous 55615988 5 104543510 104543511 C T 41 GENIC homozygous 55615990 5 104543582 104543583 G A 26 GENIC homozygous 55615992 5 104543706 104543707 C A 26 GENIC homozygous 55615994 5 104543967 104543968 C A 41 GENIC homozygous 55615996 5 104544620 104544621 A G 40 GENIC homozygous 55615998 5 104544821 104544822 G A 19 GENIC homozygous 55616000 5 104544950 104544966 TGTGTGTATGTGTGTT ---------------- 17 GENIC homozygous 56350486 5 104545853 104545854 G A 28 GENIC homozygous 55616002 5 104545984 104545985 T G 54 GENIC homozygous 55616004 5 104546094 104546095 G A 33 GENIC homozygous 55616006 5 104546247 104546248 T C 28 GENIC homozygous 55616008 5 104546618 104546619 T C 48 GENIC homozygous 55616010 5 104546824 104546825 T C 29 GENIC homozygous 55616012 5 104547199 104547200 G A 25 GENIC homozygous 55616014 5 104547202 104547204 GA -- 25 GENIC homozygous 55616016 5 104548063 104548064 T C 38 GENIC homozygous 55616018 5 104548235 104548236 C T 23 GENIC homozygous 55616020 5 104548729 104548730 G A 38 GENIC homozygous 55616022 5 104549013 104549014 A - 37 GENIC homozygous 55616024 5 104549228 104549229 G T 36 GENIC homozygous 55616026 5 104549270 104549271 C T 40 GENIC homozygous 55616028 5 104549447 104549448 A T 32 GENIC homozygous 55616030 5 104549529 104549530 A T 42 GENIC homozygous 55616032 5 104549892 104549893 A T 40 GENIC homozygous 55616034 5 104550155 104550156 C A 22 GENIC homozygous 55616036 5 104550382 104550383 G T 24 GENIC homozygous 55616038 5 104550495 104550496 G - 29 GENIC homozygous 55616040 5 104552429 104552430 C T 46 GENIC homozygous 55616044 5 104554020 104554022 TT -- 28 GENIC possibly homozygous 55616046 5 104554112 104554113 A T 37 GENIC homozygous 55616048 5 104554708 104554709 G GA 23 GENIC homozygous 55616050 5 104555963 104555964 A AACTCGGTTTT 36 GENIC homozygous 55616052 5 104556308 104556309 G A 33 GENIC homozygous 55616053 5 104557370 104557372 CC -- 26 GENIC homozygous 55616055 5 104557378 104557379 C A 27 GENIC homozygous 56350487 5 104557442 104557444 AA -- 28 GENIC heterozygous 56491273 5 104557447 104557449 AA -- 27 GENIC heterozygous 56491274 5 104558689 104558690 T TAAAAAAAAAAAAAAAA 20 GENIC homozygous 56438347 5 104559400 104559401 A G 40 GENIC homozygous 55616057 5 104559627 104559628 C T 20 GENIC homozygous 55616059 5 104559828 104559829 G C 31 GENIC homozygous 55616061 5 104561854 104561855 T C 37 GENIC homozygous 55616063 5 104562968 104562969 C - 18 GENIC homozygous 55616065 5 104563040 104563041 G - 20 GENIC homozygous 55616067 5 104563336 104563342 CCAGGA ------ 33 GENIC homozygous 55616069 5 104563357 104563358 C G 34 GENIC homozygous 55616073 5 104563369 104563370 T C 38 GENIC homozygous 55616075 5 104563375 104563376 G A 35 GENIC homozygous 55616077 5 104563441 104563442 T C 41 GENIC homozygous 55616079 5 104563808 104563809 A G 30 GENIC homozygous 55616081 5 104564082 104564083 T C 49 GENIC homozygous 55616083 5 104564096 104564097 A G 47 GENIC homozygous 55616085 5 104564783 104564784 C CT 44 GENIC homozygous 55616087 5 104564903 104564904 A G 33 GENIC homozygous 55616089 5 104565038 104565044 AGTCCT ------ 33 GENIC homozygous 55616091 5 104565509 104565510 A G 53 GENIC homozygous 55616093 5 104565529 104565530 C G 48 GENIC homozygous 55616095 5 104565560 104565561 A G 51 GENIC homozygous 55616097 5 104565726 104565727 A G 18 GENIC homozygous 55616099 5 104565847 104565848 G A 14 GENIC homozygous 55616101 5 104565859 104565860 T - 16 GENIC homozygous 55616103 5 104565874 104565876 TT -- 13 GENIC heterozygous 56548795 5 104565942 104565943 G A 17 GENIC homozygous 55616105 5 104565948 104565949 G A 17 GENIC homozygous 55616107 5 104566731 104566732 A C 20 GENIC homozygous 55616109 5 104566821 104566822 G GTT 4 GENIC homozygous 56491275 5 104566825 104566826 C T 9 GENIC homozygous 55616111 5 104566846 104566847 A G 7 GENIC homozygous 55890889 5 104566850 104566851 T TAACAACAAC 7 GENIC homozygous 55616113 5 104566902 104566903 C T 9 GENIC homozygous 55616115 5 104567020 104567028 ATCAGGTA -------- 12 GENIC homozygous 55616117 5 104567069 104567073 GATA ---- 2 GENIC homozygous 56491276 5 104567409 104567410 T C 46 GENIC homozygous 55616121 5 104567410 104567411 A T 46 GENIC homozygous 55616123 5 104568399 104568400 A G 40 GENIC homozygous 55616125 5 104568688 104568689 G A 30 GENIC homozygous 55616127 5 104568741 104568742 C T 33 GENIC homozygous 55616129 5 104569510 104569511 T C 35 GENIC homozygous 55616131 5 104569565 104569566 C T 37 GENIC homozygous 55616133 5 104570091 104570092 A - 51 GENIC homozygous 55616135 5 104570221 104570222 T C 56 GENIC homozygous 55616137 5 104570276 104570277 A T 50 GENIC homozygous 55616139 5 104570338 104570339 G A 39 GENIC homozygous 55616140 5 104570892 104570897 ATACA ----- 47 GENIC homozygous 55616142 5 104571266 104571270 GAAA ---- 6 GENIC homozygous 56491277 5 104571738 104571739 T A 34 GENIC homozygous 55616148 5 104572056 104572057 T TA 28 GENIC homozygous 55616150 5 104572446 104572447 C T 34 GENIC homozygous 55616152 5 104572713 104572714 G T 30 GENIC homozygous 55616154 5 104572855 104572856 G C 15 GENIC homozygous 55616156 5 104572871 104572877 GAGAGG ------ 9 GENIC homozygous 55616158 5 104572898 104572922 AGGGAGGGAGGGAGGGAGGGAGGG ------------------------ 9 GENIC homozygous 55616164 5 104573047 104573048 C CA 39 GENIC homozygous 55616172 5 104573070 104573071 C - 40 GENIC homozygous 55616174 5 104573341 104573353 GTTTGTTTCTTT ------------ 12 GENIC homozygous 56491278 5 104573434 104573435 G A 19 GENIC homozygous 55616178 5 104573742 104573743 A C 51 GENIC homozygous 55616180 5 104574210 104574211 G T 53 GENIC homozygous 55616182 5 104574414 104574415 A G 49 GENIC homozygous 55616184 5 104574509 104574510 A AC 34 GENIC homozygous 55616186 5 104574536 104574537 C T 26 GENIC homozygous 55616188 5 104574819 104574820 C T 20 GENIC homozygous 55616190 5 104574825 104574826 A G 22 GENIC homozygous 55616192 5 104575066 104575067 G C 39 GENIC homozygous 55616194 5 104575342 104575344 AA -- 30 GENIC homozygous 55616196 5 104575391 104575392 T G 26 GENIC homozygous 55616198 5 104575688 104575689 A G 22 GENIC homozygous 55616200 5 104575845 104575846 G T 11 GENIC homozygous 55616202 5 104577324 104577325 G A 25 GENIC possibly homozygous 55616214 5 104575873 104575874 A G 16 GENIC homozygous 55616204 5 104575891 104575892 A T 17 GENIC homozygous 55616206 5 104576094 104576095 T - 25 GENIC homozygous 55616208 5 104576256 104576257 C T 38 GENIC homozygous 55616210 5 104576328 104576329 G GC 17 GENIC homozygous 55616212 5 104554021 104554022 T - 28 GENIC heterozygous 56616760 5 104577326 104577327 A G 23 GENIC homozygous 55890890 5 104577410 104577411 A G 42 GENIC homozygous 55616216 5 104577720 104577721 G A 33 GENIC homozygous 55616218 5 104577727 104577728 T C 36 GENIC homozygous 55616220 5 104578156 104578157 G C 40 GENIC homozygous 55616222 5 104578179 104578180 T A 48 GENIC homozygous 55616224 5 104578428 104578429 G A 25 GENIC homozygous 55616226 5 104578550 104578551 T G 31 GENIC homozygous 55616228 5 104578594 104578595 T C 36 GENIC homozygous 55616230 5 104578630 104578631 G T 46 GENIC homozygous 55616232 5 104578632 104578633 A C 48 GENIC homozygous 55616234 5 104578691 104578692 T G 48 GENIC homozygous 55616236 5 104578714 104578715 T C 41 GENIC homozygous 55616238 5 104578890 104578891 A C 40 GENIC homozygous 55616240 5 104578904 104578905 A G 38 GENIC homozygous 55616241 5 104579020 104579021 T C 36 GENIC homozygous 55616243 5 104579200 104579201 T C 43 GENIC homozygous 55616245 5 104579203 104579204 T C 44 GENIC homozygous 55616247 5 104579408 104579409 C T 56 GENIC homozygous 55616253 5 104579250 104579251 A C 50 GENIC homozygous 55616249 5 104579393 104579394 C T 59 GENIC homozygous 55616251 5 104579415 104579416 T C 52 GENIC homozygous 55616255 5 104579898 104579899 C T 23 GENIC homozygous 55616257 5 104580468 104580469 T C 37 GENIC homozygous 55616259 5 104580480 104580481 A G 40 GENIC homozygous 55616261 5 104580597 104580598 G A 30 GENIC homozygous 55616263 5 104581180 104581181 C T 28 GENIC homozygous 55616265 5 104581334 104581335 C T 27 GENIC homozygous 55616267 5 104581873 104581874 C T 16 GENIC homozygous 55616269 5 104582012 104582013 A ATT 21 GENIC possibly homozygous 55616271 5 104582012 104582013 A AT 21 GENIC heterozygous 56438420 5 104582226 104582227 C T 31 GENIC homozygous 55616273 5 104582250 104582262 TGTTGTTGTTGT ------------ 21 GENIC homozygous 55616275 5 104582358 104582359 G A 31 GENIC homozygous 55616279 5 104582421 104582422 A G 31 GENIC homozygous 55616281 5 104582524 104582525 A AGAG 31 GENIC homozygous 55616283 5 104582526 104582527 T A 33 GENIC homozygous 55616285 5 104582552 104582553 C T 36 GENIC homozygous 55616287 5 104582895 104582896 T G 32 GENIC homozygous 55616289 5 104583848 104583849 A C 51 GENIC homozygous 55616291 5 104584106 104584107 C T 42 GENIC homozygous 55616293 5 104584573 104584574 C T 48 GENIC homozygous 55616295 5 104584622 104584623 A G 34 GENIC homozygous 55616297 5 104584723 104584727 ACAC ---- 17 GENIC heterozygous 56438424 5 104584730 104584731 C G 18 GENIC heterozygous 55616299 5 104584738 104584739 C G 36 GENIC homozygous 55616301 5 104584743 104584759 ACACACACAGACACAC ---------------- 33 GENIC heterozygous 56438426 5 104584751 104584763 AGACACACACAG ------------ 34 GENIC possibly homozygous 56491279 5 104584785 104584786 A - 25 GENIC possibly homozygous 56438428 5 104584788 104584795 CACACAC ------- 24 GENIC possibly homozygous 56438432 5 104584791 104584792 A - 23 GENIC heterozygous 56569122 5 104584794 104584795 C - 21 GENIC heterozygous 55616305 5 104584816 104584818 AG -- 52 GENIC homozygous 55616309 5 104584875 104584883 ACACAGAC -------- 37 GENIC homozygous 55616311 5 104584931 104584932 A AC 26 GENIC homozygous 55616315 5 104584933 104584934 A AC 26 GENIC homozygous 55616317 5 104584934 104584935 G C 26 GENIC homozygous 56438436 5 104584946 104584947 G T 24 GENIC homozygous 55616319 5 104584962 104584963 C CATAG 27 GENIC homozygous 55616321 5 104584976 104584977 T C 30 GENIC homozygous 55616323 5 104584985 104584986 T C 32 GENIC homozygous 56438438 5 104584989 104584990 A C 36 GENIC homozygous 56438440 5 104585091 104585092 C CAG 8 GENIC possibly homozygous 56438444 5 104585504 104585505 A G 22 GENIC homozygous 55616329 5 104586114 104586115 A T 32 GENIC homozygous 55616331 5 104586159 104586160 C T 20 GENIC homozygous 55616333 5 104586167 104586168 G A 21 GENIC homozygous 55616335 5 104586325 104586326 G A 16 GENIC homozygous 55616337 5 104586523 104586524 T G 41 GENIC homozygous 55616339 5 104586530 104586531 A G 41 GENIC homozygous 55616341 5 104586532 104586533 A G 42 GENIC homozygous 55616343 5 104586694 104586695 G A 14 GENIC homozygous 55616345 5 104586792 104586793 A ACT 36 GENIC homozygous 55616347 5 104586806 104586807 T C 34 GENIC homozygous 55616349 5 104587027 104587028 A G 37 GENIC homozygous 55616351 5 104587135 104587136 G A 48 GENIC homozygous 55616353 5 104587210 104587239 ACAGTGAGTACACCGCATGTGGTAGCTGC ----------------------------- 46 GENIC heterozygous 56350488 5 104587658 104587659 A T 37 GENIC homozygous 55616369 5 104587751 104587752 A G 53 GENIC homozygous 55616371 5 104588145 104588146 C T 10 GENIC homozygous 55616373 5 104588584 104588610 TTTTTTTTTTTTTTTTTTTTTTTTTT -------------------------- 11 GENIC heterozygous 56569124 5 104588803 104588804 G C 45 GENIC homozygous 55616377 5 104588993 104588994 A G 40 GENIC homozygous 55616379 5 104589530 104589544 TCTCTCTCACACAC -------------- 6 GENIC homozygous 56491280 5 104589562 104589563 C CGAGAGA 4 GENIC heterozygous 56491281 5 104589563 104589564 G GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGAGAGAAAT 4 GENIC heterozygous 56438452 5 104590341 104590342 A ACT 18 GENIC homozygous 55616383 5 104591024 104591025 T C 48 GENIC homozygous 55616387 5 104591174 104591175 A G 36 GENIC homozygous 55616389 5 104591452 104591453 T C 34 GENIC homozygous 55616391 5 104592149 104592150 T G 19 GENIC homozygous 55616393 5 104592616 104592617 G A 28 GENIC homozygous 55616395 5 104593229 104593230 T C 58 GENIC homozygous 55616397 5 104593279 104593280 G C 47 GENIC homozygous 55616399 5 104593416 104593417 C T 50 GENIC homozygous 55616401 5 104594150 104594151 G A 34 GENIC homozygous 55616403 5 104594440 104594441 G GA 28 GENIC homozygous 55616405 5 104594760 104594761 C - 19 GENIC possibly homozygous 55616407 5 104594858 104594859 C T 19 GENIC homozygous 55616409 5 104595359 104595360 C T 27 GENIC homozygous 55616413 5 104595498 104595499 T C 25 GENIC homozygous 55616415 5 104595900 104595901 A G 21 GENIC homozygous 55616417 5 104596162 104596163 G A 6 GENIC homozygous 56048534 5 104596164 104596165 G GCT 6 GENIC homozygous 56350489 5 104596167 104596172 GGTGG ----- 6 GENIC homozygous 56350490 5 104596215 104596216 T G 21 GENIC homozygous 55616423 5 104596641 104596642 T C 17 GENIC homozygous 55616425 5 104597456 104597457 A G 34 GENIC homozygous 55616427 5 104597686 104597687 A G 31 GENIC homozygous 55616429 5 104597925 104597926 T C 19 GENIC homozygous 55616431 5 104599363 104599364 C G 28 GENIC homozygous 55616433 5 104600058 104600059 A G 38 GENIC homozygous 55616435 5 104600563 104600564 G A 35 GENIC homozygous 55616437 5 104600812 104600813 A C 44 GENIC homozygous 55616439 5 104601056 104601057 T C 41 GENIC homozygous 55616441 5 104601181 104601182 G A 1 GENIC homozygous 56491282 5 104601183 104601184 G A 1 GENIC homozygous 56491283 5 104601214 104601215 C G 5 GENIC homozygous 55616447 5 104602120 104602121 C T 39 GENIC homozygous 55616449 5 104602705 104602706 G C 36 GENIC homozygous 55616451 5 104603156 104603157 T C 38 GENIC homozygous 55616453 5 104605968 104605969 T TC 10 GENIC heterozygous 55616455 5 104607588 104607589 T TA 19 GENIC possibly homozygous 55616457 5 104607682 104607683 C T 30 GENIC homozygous 55616459 5 104612392 104612393 A AGAAGGAAG 7 GENIC homozygous 56491284 5 104615072 104615073 T TACACACACACACACACACACACACACACACACACACAC 1 GENIC homozygous 56491285 5 104615313 104615314 T C 35 GENIC homozygous 55616465 5 104617406 104617407 C G 30 GENIC homozygous 55616467 5 104617570 104617571 C CA 34 GENIC homozygous 55616469 5 104618002 104618003 A AAAG 7 GENIC homozygous 55616473 5 104622874 104622896 TGTGTGTATATGTGTGTGTGTG ---------------------- 14 GENIC heterozygous 56573130 5 104622876 104622896 TGTGTATATGTGTGTGTGTG -------------------- 14 GENIC possibly homozygous 56491287 5 104624150 104624151 C A 12 GENIC homozygous 55616481 5 104626132 104626133 T TACACACACACACAC 14 GENIC homozygous 55616483 5 104629985 104629986 G T 27 GENIC homozygous 55616491 5 104635242 104635243 T C 42 GENIC homozygous 55616497 5 104632420 104632421 C CTCTGTTCTGT 19 GENIC heterozygous 56616762 5 104632421 104632426 TCTGT ----- 19 GENIC possibly homozygous 55616492 5 104634401 104634402 C T 44 GENIC homozygous 55616493 5 104634600 104634601 C T 30 GENIC homozygous 55616494 5 104635962 104635966 AAAA ---- 9 GENIC heterozygous 56438524 5 104635963 104635966 AAA --- 9 GENIC heterozygous 56569125 5 104636240 104636241 C T 43 GENIC homozygous 55616499 5 104636440 104636441 A AACACAC 3 GENIC heterozygous 56438526 5 104636443 104636449 ACACAC ------ 3 GENIC heterozygous 56491288 5 104638725 104638726 A T 17 GENIC homozygous 55616501 5 104638966 104638967 C T 46 GENIC homozygous 55616502 5 104639922 104639923 A ATCTC 8 GENIC homozygous 55616503 5 104640003 104640004 T C 24 GENIC homozygous 55616504 5 104642512 104642513 C T 40 GENIC homozygous 55616505 5 104642964 104642965 C A 27 GENIC homozygous 56350494 5 104644686 104644687 T TTC 8 GENIC heterozygous 56491289 5 104645455 104645456 G A 39 GENIC heterozygous 55616507 5 104645698 104645699 A G 40 GENIC homozygous 55616508 5 104646999 104647000 A - 33 GENIC homozygous 55616509 5 104648898 104648900 AG -- 4 GENIC homozygous 56491290 5 104649053 104649054 G GA 16 GENIC homozygous 55616511 5 104649611 104649612 T C 42 GENIC homozygous 55616512 5 104651118 104651130 ACACACACACAC ------------ 18 GENIC heterozygous 56438622 5 104651120 104651130 ACACACACAC ---------- 18 GENIC heterozygous 56491291 5 104651122 104651130 ACACACAC -------- 18 GENIC heterozygous 56491292 5 104653180 104653181 G A 13 GENIC homozygous 55616515 5 104653842 104653848 TATGAA ------ 32 GENIC homozygous 55616517 5 104653851 104653852 C A 31 GENIC homozygous 55616519 5 104653977 104653978 T C 49 GENIC homozygous 55616520 5 104655096 104655097 T TA 12 GENIC possibly homozygous 55616521 5 104655357 104655358 T C 22 GENIC homozygous 55616522 5 104657300 104657304 ACAC ---- 14 GENIC heterozygous 56579489 5 104657302 104657304 AC -- 14 GENIC heterozygous 56491293 5 104657651 104657652 T C 21 GENIC homozygous 55616525 5 104659904 104659905 A - 47 GENIC homozygous 55616526 5 104663862 104663863 C A 36 GENIC possibly homozygous 55616527 5 104666444 104666445 C CT 37 GENIC homozygous 55616528 5 104667331 104667332 A - 31 GENIC homozygous 55616529 5 104667337 104667338 A ATTCTTCCTTCATGTTTTCCTCTCTTCTTTATCTAATTTCTAAAGTACAGTACATATGAT 29 GENIC homozygous 56438683 5 104667711 104667712 C CAAA 9 GENIC possibly homozygous 55616530 5 104670372 104670373 A G 32 GENIC homozygous 55616531 5 104670863 104670867 ACAT ---- 17 GENIC heterozygous 56491294 5 104670873 104670881 ACACATTC -------- 7 GENIC heterozygous 56491295 5 104670878 104670882 TTCT ---- 18 GENIC heterozygous 56548866 5 104675524 104675525 C T 22 GENIC homozygous 55616533