chr	start	stop	reference nuc	variant nuc	depth	genic status	zygosity	variant ID
3	54366149	54366150	A	AT	10	INTERGENIC	possibly homozygous	58291044
3	54366149	54366150	A	ATT	10	INTERGENIC	heterozygous	58946211
3	54367378	54367379	A	AGTGT	4	INTERGENIC	heterozygous	58583051
3	54367387	54367389	GT	--	4	INTERGENIC	heterozygous	58649025
3	54368736	54368737	T	-	7	INTERGENIC	possibly homozygous	57376893
3	54376534	54376535	G	GACAGACCCATGGCTCCAGCTGCATAT	8	INTERGENIC	possibly homozygous	58583054
3	54376536	54376537	T	TAGCAGAGGATGGCCCTGTCGGGCATCAATAGGAGG	8	INTERGENIC	possibly homozygous	58583055
3	54414217	54414229	TCCTTCCTTCCT	------------	3	INTERGENIC	homozygous	58804198
3	54436102	54436103	G	GA	25	INTERGENIC	homozygous	57376895
3	54436979	54436980	G	GT	21	INTERGENIC	homozygous	57376896
3	54441455	54441456	G	A	3	INTERGENIC	homozygous	57376897
3	54441460	54441461	G	GA	4	INTERGENIC	homozygous	57376898
3	54441461	54441462	C	A	5	INTERGENIC	homozygous	58583056
3	54441472	54441473	A	AT	7	INTERGENIC	homozygous	57376899
3	54444504	54444506	CT	--	7	INTERGENIC	heterozygous	58583058
3	54457024	54457025	A	AT	13	INTERGENIC	possibly homozygous	58357281
3	54433547	54433548	G	C	15	INTERGENIC	homozygous	58357275
3	54448678	54448679	G	C	10	INTERGENIC	possibly homozygous	58357277
3	54448724	54448725	A	G	2	INTERGENIC	homozygous	58357279
3	54458866	54458867	A	T	18	INTERGENIC	homozygous	57376903
3	54460466	54460467	C	CA	21	INTERGENIC	homozygous	57376904
3	54461687	54461688	G	C	20	INTERGENIC	homozygous	58357283
3	54466782	54466784	CA	--	20	INTERGENIC	homozygous	58357285
3	54467294	54467295	T	TA	3	INTERGENIC	heterozygous	58583059
3	54469058	54469059	C	CA	20	INTERGENIC	homozygous	57376905
3	54471403	54471404	A	AG	5	INTERGENIC	homozygous	57376906
3	54471414	54471417	GGA	---	4	INTERGENIC	homozygous	57376908
3	54474623	54474624	A	ATG	4	INTERGENIC	heterozygous	57888420
3	54475061	54475062	A	G	14	INTERGENIC	homozygous	58357287
3	54479350	54479351	G	-	14	INTERGENIC	homozygous	57376910
3	54479869	54479870	G	GT	27	INTERGENIC	homozygous	57376911
3	54487448	54487449	G	-	16	INTERGENIC	homozygous	57376917
3	54494237	54494238	C	CATTTCTGGGTCTTCAATTCTATT	6	INTERGENIC	homozygous	57376918
3	54495447	54495448	T	A	18	INTERGENIC	homozygous	58357289
3	54500693	54500696	TTT	---	8	INTERGENIC	heterozygous	58649027
3	54500695	54500696	T	-	8	INTERGENIC	heterozygous	58649028
3	54507955	54507956	T	TTCTCTCTCTCTC	31	INTERGENIC	heterozygous	58583061
3	54507955	54507956	T	TTCTCTCTC	31	INTERGENIC	heterozygous	58853522
3	54508085	54508086	T	TTATG	38	INTERGENIC	heterozygous	58946219
3	54508444	54508445	A	G	115	INTERGENIC	heterozygous	57376924
3	54527435	54527438	GCG	---	16	INTERGENIC	heterozygous	58667481
3	54531387	54531389	AT	--	8	INTERGENIC	heterozygous	57376927
3	54538062	54538063	A	-	5	INTERGENIC	heterozygous	58583062
3	54555219	54555223	TGTA	----	9	INTERGENIC	heterozygous	59235998
3	54555221	54555223	TA	--	8	INTERGENIC	heterozygous	57376928
3	54557212	54557213	A	G	15	INTERGENIC	homozygous	57376930
3	54563187	54563188	G	GTTTTAATTTAATTTAATTTAATTTTTCTTATTTGTTCTTTTTTACTTTGCAGTGTTTAATATTCCTTCTCCCCACCCCTGTATACTTGGT	10	INTERGENIC	homozygous	58583065
3	54568795	54568796	C	-	20	INTERGENIC	homozygous	57376939
3	54569092	54569093	C	CT	11	INTERGENIC	homozygous	58357291
3	54579169	54579170	C	CCTCTCT	12	INTERGENIC	heterozygous	58946223
3	54582165	54582166	C	CAT	2	INTERGENIC	homozygous	58357295
3	54584512	54584513	A	C	24	INTERGENIC	homozygous	58357297
3	54585548	54585549	T	-	26	INTERGENIC	homozygous	58357299
3	54586667	54586668	T	C	27	INTERGENIC	homozygous	58357301
3	54586964	54586965	A	G	25	INTERGENIC	homozygous	58357303
3	54586967	54586968	T	-	23	INTERGENIC	homozygous	58544703
3	54587143	54587144	T	A	21	INTERGENIC	homozygous	58357307
3	54587359	54587360	T	C	19	INTERGENIC	homozygous	58357309
3	54587699	54587700	G	T	16	INTERGENIC	homozygous	58357311
3	54587829	54587830	G	T	14	INTERGENIC	homozygous	58357313
3	54588075	54588076	A	T	22	INTERGENIC	homozygous	58357315
3	54588365	54588366	T	C	15	INTERGENIC	homozygous	58946225
3	54588526	54588527	T	TCA	12	INTERGENIC	homozygous	58291048
3	54588680	54588681	A	-	13	INTERGENIC	homozygous	58357321
3	54589258	54589259	A	T	23	INTERGENIC	homozygous	58357323
3	54589888	54589889	A	-	23	INTERGENIC	homozygous	58357325
3	54590032	54590033	T	A	20	INTERGENIC	homozygous	58357327
3	54590177	54590178	T	-	9	INTERGENIC	homozygous	58357329
3	54591330	54591331	G	GAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCACACATACTGGAGAGAGCTGAACAGTTAGAGGCATTTGCCATCAAGTCTGATTACTGGACC	3	INTERGENIC	homozygous	58583066
3	54591359	54591373	CACACACACACACA	--------------	2	INTERGENIC	homozygous	58946227
3	54591608	54591611	TTT	---	5	INTERGENIC	heterozygous	58357331
3	54591609	54591611	TT	--	5	INTERGENIC	heterozygous	59420121
3	54591691	54591692	C	CTT	18	INTERGENIC	homozygous	58357333
3	54591782	54591783	C	T	25	INTERGENIC	homozygous	58357335
3	54596220	54596221	A	C	8	INTERGENIC	homozygous	58357337
3	54596368	54596369	A	G	13	INTERGENIC	homozygous	58357339
3	54596733	54596734	C	CTTTT	4	INTERGENIC	homozygous	57376942
3	54597007	54597008	A	AT	9	INTERGENIC	homozygous	58357343
3	54597021	54597022	C	CT	6	INTERGENIC	homozygous	58357345
3	54597040	54597041	T	G	4	INTERGENIC	homozygous	57376950
3	54597061	54597062	A	C	1	INTERGENIC	homozygous	57376951
3	54597065	54597066	A	T	1	INTERGENIC	homozygous	57376952
3	54597066	54597067	A	G	1	INTERGENIC	homozygous	57376953
3	54597068	54597069	A	T	1	INTERGENIC	homozygous	57376954
3	54599228	54599229	C	CTT	8	INTERGENIC	heterozygous	58853526
3	54599235	54599236	T	TA	19	INTERGENIC	heterozygous	58583071
3	54605864	54605865	T	G	12	INTERGENIC	possibly homozygous	58357359
3	54605865	54605866	A	T	12	INTERGENIC	possibly homozygous	58544705
3	54606163	54606164	A	T	14	INTERGENIC	homozygous	58357361
3	54606203	54606204	T	G	14	INTERGENIC	homozygous	58357363
3	54606233	54606234	A	G	16	INTERGENIC	homozygous	58357365
3	54606477	54606478	G	A	22	INTERGENIC	homozygous	58357367
3	54606723	54606724	T	-	22	INTERGENIC	homozygous	58357369
3	54606724	54606725	T	C	22	INTERGENIC	homozygous	58544706
3	54606954	54606955	A	G	25	INTERGENIC	homozygous	58357371
3	54607283	54607284	T	-	20	INTERGENIC	homozygous	58357373
3	54607351	54607352	T	-	21	INTERGENIC	homozygous	58357375
3	54607771	54607772	A	ACTTAGTTT	22	INTERGENIC	homozygous	57376964
3	54608052	54608053	A	G	20	INTERGENIC	homozygous	58357377
3	54608286	54608287	G	A	24	INTERGENIC	homozygous	58357379
3	54608588	54608589	T	C	19	INTERGENIC	homozygous	58357381
3	54615403	54615404	T	A	11	INTERGENIC	homozygous	58357385
3	54616211	54616212	C	G	19	INTERGENIC	homozygous	58357387
3	54616293	54616294	C	G	18	INTERGENIC	homozygous	58357389
3	54617835	54617836	A	G	18	INTERGENIC	homozygous	58357393
3	54618292	54618293	T	C	19	INTERGENIC	homozygous	58357395
3	54618731	54618738	CCTAAGC	-------	28	INTERGENIC	homozygous	58357397
3	54618942	54618943	C	T	23	INTERGENIC	homozygous	58357399
3	54619433	54619434	C	G	8	INTERGENIC	homozygous	58357401
3	54619439	54619440	C	T	8	INTERGENIC	homozygous	58357403
3	54621729	54621730	G	A	25	INTERGENIC	homozygous	58357409
3	54624122	54624123	T	TCAACAA	10	INTERGENIC	homozygous	58946229
3	54499678	54499679	T	TACAC	3	INTERGENIC	heterozygous	58685502
3	54530309	54530313	ACAC	----	5	INTERGENIC	homozygous	58685504