chr start stop reference nuc variant nuc depth genic status zygosity variant ID 3 54112003 54112004 C T 7 GENIC homozygous 58356701 3 54112489 54112490 C G 10 GENIC heterozygous 58356713 3 54112770 54112771 C A 12 GENIC homozygous 58356715 3 54113223 54113224 C T 16 GENIC heterozygous 58356717 3 54114182 54114183 A G 19 GENIC homozygous 58356719 3 54114489 54114490 T C 15 GENIC possibly homozygous 58356721 3 54116855 54116856 T TG 1 GENIC homozygous 58356728 3 54116882 54116883 G - 3 GENIC heterozygous 58356730 3 54116976 54116977 A G 11 GENIC homozygous 58356734 3 54117308 54117309 G T 3 GENIC heterozygous 58356736 3 54118977 54118978 T TTATC 3 GENIC homozygous 58356738 3 54119153 54119154 G GT 8 GENIC homozygous 58356740 3 54119196 54119197 C CTT 1 GENIC homozygous 58356742 3 54120194 54120195 A G 19 GENIC possibly homozygous 58356744 3 54120285 54120286 G T 15 GENIC possibly homozygous 58356746 3 54121507 54121508 T C 21 GENIC possibly homozygous 58356748 3 54123224 54123225 C T 13 GENIC homozygous 58356752 3 54123307 54123308 C T 12 GENIC homozygous 58356754 3 54123440 54123442 AA -- 11 GENIC possibly homozygous 58356756 3 54123628 54123629 G A 18 GENIC possibly homozygous 58356758 3 54124009 54124010 C CATG 1 GENIC homozygous 58356760 3 54124292 54124293 C - 7 GENIC possibly homozygous 58356762 3 54124477 54124478 C A 14 GENIC heterozygous 58356764 3 54124938 54124939 C T 16 GENIC possibly homozygous 58356766 3 54125139 54125140 T C 22 GENIC possibly homozygous 58356768 3 54125200 54125201 A G 16 GENIC homozygous 58356770 3 54125376 54125377 A AT 1 GENIC homozygous 58356772 3 54125426 54125427 C T 11 GENIC homozygous 58356774 3 54125493 54125494 A G 17 GENIC possibly homozygous 58356776 3 54127705 54127706 C G 11 GENIC possibly homozygous 58356778 3 54127824 54127825 G GTTTTTTT 1 GENIC homozygous 58946170 3 54127855 54127856 T C 6 GENIC homozygous 58356782 3 54128076 54128077 C T 15 GENIC homozygous 58356784 3 54128210 54128212 TT -- 1 GENIC homozygous 58356786 3 54128440 54128441 A C 23 GENIC homozygous 58356788 3 54128466 54128467 T C 15 GENIC possibly homozygous 58356790 3 54128810 54128826 GAAAGGAAGGAAGGAC ---------------- 2 GENIC homozygous 58745173 3 54128933 54128934 G A 14 GENIC homozygous 58356804 3 54129705 54129706 C T 12 GENIC heterozygous 58356808 3 54129820 54129821 C T 13 GENIC homozygous 58356810 3 54130000 54130001 G A 8 GENIC heterozygous 58356812 3 54130082 54130085 TTA --- 3 GENIC homozygous 58356814 3 54130710 54130711 G C 13 GENIC heterozygous 58356816 3 54130748 54130749 G GC 14 GENIC possibly homozygous 58356818 3 54130782 54130783 A T 13 GENIC possibly homozygous 58356820 3 54130791 54130792 A G 17 GENIC homozygous 58356822 3 54116709 54116711 TA -- 1 GENIC homozygous 58451848 3 54128752 54128756 ACAA ---- 11 GENIC possibly homozygous 58544688 3 54128757 54128758 A C 10 GENIC possibly homozygous 58544689 3 54131234 54131235 T C 4 GENIC homozygous 58544690 3 54131237 54131238 C T 4 GENIC heterozygous 58544691 3 54131568 54131569 A G 20 GENIC possibly homozygous 58356824 3 54131914 54131915 C G 22 GENIC homozygous 58356826 3 54132202 54132203 T C 16 GENIC homozygous 58356828 3 54132530 54132531 T A 12 GENIC possibly homozygous 58356830 3 54132696 54132697 G T 8 GENIC homozygous 58356832 3 54132955 54132956 T C 18 GENIC heterozygous 58356834 3 54135249 54135250 T G 18 GENIC heterozygous 58356840 3 54136099 54136100 G GT 2 GENIC homozygous 58356842 3 54136248 54136249 C A 14 GENIC heterozygous 58356844 3 54136271 54136272 C CCA 14 GENIC homozygous 58356846 3 54136691 54136692 A C 34 GENIC homozygous 58356848 3 54137808 54137809 T C 28 GENIC homozygous 58356850 3 54138457 54138458 G A 12 GENIC possibly homozygous 58356852 3 54138762 54138763 C CT 8 GENIC homozygous 58356854 3 54139524 54139525 G T 23 GENIC homozygous 58356856 3 54140095 54140097 TC -- 4 GENIC homozygous 58356858 3 54140507 54140508 T TA 22 GENIC possibly homozygous 57376828 3 54140828 54140829 C A 2 GENIC homozygous 57376829 3 54140833 54140834 T A 1 GENIC homozygous 58356860 3 54140962 54140963 A - 13 GENIC homozygous 57376832 3 54142138 54142139 T C 13 GENIC possibly homozygous 58356862 3 54142828 54142829 G A 14 GENIC homozygous 58291030 3 54142964 54142973 ATCATCATC --------- 4 GENIC homozygous 58356866 3 54143459 54143460 A G 7 GENIC heterozygous 58356868 3 54143650 54143651 T C 20 GENIC homozygous 58356870 3 54144861 54144862 C T 8 GENIC heterozygous 58356872 3 54145575 54145576 A G 20 GENIC homozygous 58356876 3 54146007 54146008 A C 19 GENIC possibly homozygous 58356878 3 54146475 54146477 AT -- 6 GENIC homozygous 58356880 3 54150154 54150155 C T 22 GENIC homozygous 58356882 3 54150661 54150662 G - 8 GENIC homozygous 58356884 3 54152088 54152089 C T 13 GENIC homozygous 58356886 3 54152323 54152324 A AT 8 GENIC possibly homozygous 58356888 3 54152593 54152594 T C 10 GENIC homozygous 58356890 3 54153038 54153039 T G 17 GENIC homozygous 58356892 3 54153501 54153502 G A 19 GENIC possibly homozygous 58356894 3 54153860 54153861 T A 19 GENIC homozygous 58356896 3 54153956 54153957 C T 21 GENIC possibly homozygous 58356898 3 54154121 54154122 T C 36 GENIC homozygous 58356900 3 54154185 54154186 G A 20 GENIC possibly homozygous 58356902 3 54154893 54154894 A T 6 GENIC heterozygous 58356904 3 54154896 54154897 C T 6 GENIC heterozygous 58356906 3 54154921 54154922 C G 13 GENIC homozygous 58356908 3 54155182 54155183 C A 6 GENIC heterozygous 58356912 3 54155284 54155285 G A 11 GENIC homozygous 58356914 3 54155384 54155385 G A 13 GENIC homozygous 58356916 3 54156472 54156473 G C 23 GENIC homozygous 58356918 3 54156583 54156584 A G 27 GENIC possibly homozygous 58356920 3 54156642 54156643 A C 24 GENIC homozygous 58356922 3 54158558 54158559 C T 21 GENIC possibly homozygous 58356924 3 54159319 54159320 T A 21 GENIC homozygous 58356932 3 54159575 54159577 AA -- 1 GENIC homozygous 58544692 3 54159577 54159578 A AGTCC 1 GENIC homozygous 58544693 3 54159580 54159581 G C 1 GENIC homozygous 58356936 3 54159623 54159624 T - 1 GENIC homozygous 58291032 3 54159624 54159625 T G 2 GENIC heterozygous 58946181 3 54159794 54159795 A G 11 GENIC homozygous 58356938 3 54159926 54159927 G A 13 GENIC homozygous 58356940 3 54160070 54160071 C - 13 GENIC homozygous 58356942 3 54160092 54160093 T - 8 GENIC homozygous 58356944 3 54160179 54160180 C T 8 GENIC heterozygous 58356946 3 54160272 54160273 A T 13 GENIC homozygous 58356948 3 54160665 54160666 C T 5 GENIC homozygous 58356950 3 54161286 54161287 T C 28 GENIC possibly homozygous 58356954 3 54161581 54161582 C T 16 GENIC homozygous 58356956 3 54161766 54161767 A T 22 GENIC possibly homozygous 58356958 3 54161818 54161819 T A 26 GENIC homozygous 58356960 3 54162069 54162070 G A 11 GENIC heterozygous 58356962 3 54162158 54162159 C T 8 GENIC heterozygous 58356964 3 54162163 54162164 C CT 3 GENIC heterozygous 58451862 3 54162315 54162316 C CACTTAGCTAGTCCATCCCTAGGAGGGGAGA 12 GENIC heterozygous 58544694 3 54162486 54162487 G A 7 GENIC heterozygous 58356972 3 54162648 54162649 A G 11 GENIC homozygous 58356974 3 54162779 54162780 T TTTGTTTGG 3 GENIC homozygous 58356980 3 54162832 54162833 T C 15 GENIC possibly homozygous 58356984 3 54163257 54163258 A T 15 GENIC homozygous 58356990 3 54163832 54163833 T G 15 GENIC homozygous 58356992 3 54164370 54164371 C T 20 GENIC homozygous 58356994 3 54164959 54164960 C T 15 GENIC heterozygous 58356996 3 54164998 54164999 T C 5 GENIC homozygous 58356998 3 54165096 54165134 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG -------------------------------------- 1 GENIC homozygous 58544695 3 54165206 54165207 A T 25 GENIC homozygous 58357002 3 54165464 54165465 C G 14 GENIC homozygous 58357004 3 54165506 54165507 G T 22 GENIC possibly homozygous 58357006 3 54165664 54165665 T A 29 GENIC homozygous 58357009 3 54165707 54165708 T G 24 GENIC possibly homozygous 58357011 3 54165958 54165959 A C 25 GENIC possibly homozygous 58357013 3 54165994 54165995 G T 19 GENIC homozygous 58357015 3 54166090 54166091 C T 17 GENIC possibly homozygous 58357017 3 54166132 54166133 C T 21 GENIC possibly homozygous 58357019 3 54167549 54167550 A C 14 GENIC homozygous 58357031 3 54166401 54166402 A G 20 GENIC possibly homozygous 58357021 3 54166589 54166590 T C 28 GENIC homozygous 58357023 3 54166696 54166697 T C 26 GENIC possibly homozygous 58357025 3 54167213 54167214 G A 31 GENIC possibly homozygous 58357027 3 54167542 54167543 T C 13 GENIC homozygous 58357029 3 54168979 54168983 TGTT ---- 1 GENIC homozygous 58544696 3 54169354 54169355 C A 21 GENIC possibly homozygous 58357033 3 54169453 54169454 C T 5 GENIC homozygous 58357035 3 54169563 54169564 G A 10 GENIC homozygous 58357037 3 54169683 54169684 G T 9 GENIC homozygous 58357039 3 54169898 54169899 C T 5 GENIC homozygous 58357041 3 54169979 54169980 G GA 2 GENIC homozygous 58357043 3 54170484 54170485 A G 17 GENIC homozygous 58357045 3 54170575 54170576 A T 16 GENIC homozygous 58357047 3 54170628 54170629 A G 11 GENIC possibly homozygous 58357049 3 54170844 54170845 A G 19 GENIC possibly homozygous 58357051 3 54172311 54172312 T G 7 GENIC homozygous 58357053 3 54173266 54173267 C T 7 GENIC homozygous 58357065 3 54173327 54173328 T C 4 GENIC homozygous 58357069 3 54173446 54173447 C A 4 GENIC homozygous 58357073 3 54173662 54173663 T C 15 GENIC homozygous 58357075 3 54173713 54173714 T C 16 GENIC possibly homozygous 58357077 3 54173745 54173746 G C 12 GENIC homozygous 58357079 3 54174246 54174247 C CG 4 GENIC heterozygous 58357081 3 54174292 54174293 G A 4 GENIC homozygous 58357083 3 54174668 54174669 A G 21 GENIC homozygous 58357085 3 54175431 54175432 G A 29 GENIC homozygous 58357087 3 54175691 54175692 G A 14 GENIC possibly homozygous 58357089 3 54175738 54175739 G A 11 GENIC possibly homozygous 58357091 3 54175834 54175835 T TA 15 GENIC homozygous 58357093 3 54175873 54175874 G GCAGACACATAGGAGACCCTGT 3 GENIC homozygous 58544698 3 54176369 54176370 G T 11 GENIC homozygous 58357101 3 54176538 54176539 A G 6 GENIC homozygous 58357103 3 54176590 54176591 G A 19 GENIC possibly homozygous 58357105 3 54176684 54176685 G C 15 GENIC homozygous 58357107 3 54176892 54176893 T A 18 GENIC possibly homozygous 58357109 3 54176975 54176976 A G 13 GENIC possibly homozygous 58357111 3 54177200 54177201 G A 20 GENIC homozygous 58357113 3 54177326 54177327 A G 28 GENIC possibly homozygous 58357115 3 54178449 54178450 G GT 12 GENIC homozygous 58357123 3 54177417 54177418 T G 22 GENIC possibly homozygous 58357117 3 54177535 54177536 T - 11 GENIC possibly homozygous 58357119 3 54178037 54178038 G C 15 GENIC heterozygous 57376835 3 54178134 54178135 T A 7 GENIC homozygous 58357121 3 54178462 54178463 G A 15 GENIC homozygous 58357125 3 54178527 54178528 T C 4 GENIC homozygous 58357127 3 54179447 54179448 T - 12 GENIC possibly homozygous 57376836 3 54179568 54179569 A C 21 GENIC homozygous 58357129 3 54179870 54179871 G A 2 GENIC homozygous 58357131 3 54179889 54179890 T C 15 GENIC heterozygous 58357133 3 54180679 54180680 A G 22 GENIC possibly homozygous 58357135 3 54181427 54181428 T C 7 GENIC homozygous 58357139 3 54181468 54181469 G A 19 GENIC homozygous 58357141 3 54181515 54181516 A G 14 GENIC homozygous 58357143 3 54181538 54181539 G T 18 GENIC possibly homozygous 58357145 3 54182262 54182263 A G 27 GENIC homozygous 58357147 3 54183120 54183121 C T 22 GENIC possibly homozygous 57376837