chr	start	stop	reference nuc	variant nuc	depth	genic status	zygosity	variant ID
3	54367378	54367379	A	AGTGT	4	INTERGENIC	heterozygous	58583051
3	54367387	54367389	GT	--	4	INTERGENIC	heterozygous	58649025
3	54367461	54367463	GT	--	13	INTERGENIC	heterozygous	58583052
3	54376534	54376535	G	GACAGACCCATGGCTCCAGCTGCATAT	5	INTERGENIC	homozygous	58583054
3	54376536	54376537	T	TAGCAGAGGATGGCCCTGTCGGGCATCAATAGGAGG	5	INTERGENIC	homozygous	58583055
3	54436102	54436103	G	GA	18	INTERGENIC	homozygous	57376895
3	54436979	54436980	G	GT	5	INTERGENIC	homozygous	57376896
3	54441455	54441456	G	A	6	INTERGENIC	homozygous	57376897
3	54441460	54441461	G	GA	4	INTERGENIC	homozygous	57376898
3	54441461	54441462	C	A	4	INTERGENIC	homozygous	58583056
3	54441472	54441473	A	AT	7	INTERGENIC	homozygous	57376899
3	54444502	54444506	CTCT	----	6	INTERGENIC	heterozygous	58583057
3	54444504	54444506	CT	--	6	INTERGENIC	heterozygous	58583058
3	54458866	54458867	A	T	13	INTERGENIC	homozygous	57376903
3	54460466	54460467	C	CA	19	INTERGENIC	homozygous	57376904
3	54469058	54469059	C	CA	14	INTERGENIC	homozygous	57376905
3	54471403	54471404	A	AG	7	INTERGENIC	homozygous	57376906
3	54471414	54471417	GGA	---	7	INTERGENIC	homozygous	57376908
3	54474623	54474624	A	ATGTG	4	INTERGENIC	homozygous	57376909
3	54479350	54479351	G	-	9	INTERGENIC	homozygous	57376910
3	54479869	54479870	G	GT	15	INTERGENIC	homozygous	57376911
3	54487448	54487449	G	-	10	INTERGENIC	homozygous	57376917
3	54494237	54494238	C	CATTTCTGGGTCTTCAATTCTATT	11	INTERGENIC	homozygous	57376918
3	54507955	54507956	T	TTCTCTC	13	INTERGENIC	heterozygous	58583060
3	54507955	54507956	T	TTCTCTCTCTCTC	13	INTERGENIC	heterozygous	58583061
3	54508444	54508445	A	G	32	INTERGENIC	heterozygous	57376924
3	54509087	54509088	C	CT	16	INTERGENIC	heterozygous	57376926
3	54557212	54557213	A	G	7	INTERGENIC	homozygous	57376930
3	54558733	54558734	T	-	15	INTERGENIC	heterozygous	58583064
3	54563187	54563188	G	GTTTTAATTTAATTTAATTTAATTTTTCTTATTTGTTCTTTTTTACTTTGCAGTGTTTAATATTCCTTCTCCCCACCCCTGTATACTTGGT	1	INTERGENIC	homozygous	58583065
3	54568795	54568796	C	-	5	INTERGENIC	homozygous	57376939
3	54591330	54591331	G	GAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCACACATACTGGAGAGAGCTGAACAGTTAGAGGCATTTGCCATCAAGTCTGATTACTGGACC	3	INTERGENIC	homozygous	58583066
3	54597040	54597041	T	G	11	INTERGENIC	homozygous	57376950
3	54597061	54597062	A	C	7	INTERGENIC	homozygous	57376951
3	54597065	54597066	A	T	7	INTERGENIC	homozygous	57376952
3	54597066	54597067	A	G	7	INTERGENIC	homozygous	57376953
3	54597068	54597069	A	T	7	INTERGENIC	homozygous	57376954
3	54597076	54597077	A	T	8	INTERGENIC	homozygous	57376955
3	54597089	54597090	G	GGC	4	INTERGENIC	homozygous	58583067
3	54597092	54597093	T	-	5	INTERGENIC	homozygous	58583068
3	54597096	54597097	T	-	3	INTERGENIC	homozygous	58583069
3	54597099	54597100	A	C	3	INTERGENIC	homozygous	58583070
3	54508056	54508057	C	CTTATTTAT	12	INTERGENIC	heterozygous	58667480
3	54527435	54527438	GCG	---	21	INTERGENIC	heterozygous	58667481
3	54599237	54599238	T	TTTATTTTTTA	8	INTERGENIC	heterozygous	58667482
3	54607771	54607772	A	ACTTAGTTT	19	INTERGENIC	homozygous	57376964