chr start stop reference nuc variant nuc depth genic status zygosity variant ID 19 56067862 56067863 G GTGTCTGTC 13 INTERGENIC homozygous 46411603 19 56068151 56068152 T TAAA 25 INTERGENIC homozygous 46298099 19 56068352 56068353 G T 30 INTERGENIC homozygous 46298100 19 56068813 56068814 T G 25 INTERGENIC homozygous 46298101 19 56068953 56068954 T A 26 INTERGENIC homozygous 46298102 19 56069027 56069028 G A 34 INTERGENIC homozygous 46298103 19 56069395 56069396 A - 33 INTERGENIC homozygous 46298104 19 56069618 56069624 TTTTTT ------ 1 INTERGENIC homozygous 46298105 19 56070219 56070220 T TA 21 INTERGENIC homozygous 46298106 19 56070543 56070546 TTT --- 22 INTERGENIC homozygous 46298107 19 56070635 56070636 C T 34 INTERGENIC homozygous 46298108 19 56070647 56070648 A G 33 INTERGENIC homozygous 46298109 19 56071398 56071410 TGTTGTTGCTGC ------------ 21 INTERGENIC homozygous 46298110 19 56071470 56071471 C T 28 INTERGENIC homozygous 46298112 19 56080064 56080065 T - 25 INTERGENIC homozygous 46298114 19 56080073 56080074 G A 26 INTERGENIC homozygous 46298115 19 56080778 56080780 TT -- 26 INTERGENIC homozygous 46298116 19 56081806 56081807 T C 29 INTERGENIC homozygous 46298117 19 56082466 56082467 G A 31 INTERGENIC homozygous 46298118 19 56082664 56082665 A G 32 INTERGENIC homozygous 46298119 19 56083282 56083283 A G 32 INTERGENIC homozygous 46298120 19 56083349 56083350 C CA 29 INTERGENIC homozygous 46298121 19 56083425 56083426 C T 28 INTERGENIC homozygous 46298122 19 56083455 56083456 T C 22 INTERGENIC homozygous 46298123 19 56083612 56083620 ACACACAC -------- 11 INTERGENIC heterozygous 46411605 19 56083614 56083620 ACACAC ------ 11 INTERGENIC heterozygous 46411607 19 56083722 56083723 G A 17 INTERGENIC homozygous 46298124 19 56084686 56084687 T A 43 INTERGENIC homozygous 46298125 19 56084817 56084818 A AAC 26 INTERGENIC homozygous 46298126 19 56085343 56085344 G T 19 INTERGENIC homozygous 46298127 19 56085429 56085430 T C 20 INTERGENIC homozygous 46298128 19 56086126 56086127 A G 13 INTERGENIC homozygous 46298129 19 56086889 56086893 ATAC ---- 8 INTERGENIC heterozygous 46169542 19 56086891 56086893 AC -- 8 INTERGENIC heterozygous 46169543 19 56087001 56087005 ATAT ---- 15 INTERGENIC homozygous 46298130 19 56087080 56087081 G A 11 INTERGENIC homozygous 46298131 19 56087183 56087184 C CGT 7 INTERGENIC heterozygous 46214030 19 56087183 56087184 C CGTGT 7 INTERGENIC possibly homozygous 46298132 19 56087438 56087439 C T 24 INTERGENIC homozygous 46298133 19 56087451 56087452 C T 25 INTERGENIC homozygous 46298134 19 56087982 56087983 T - 21 INTERGENIC homozygous 46298135 19 56088081 56088082 A C 31 INTERGENIC homozygous 46298136 19 56088096 56088097 G A 28 INTERGENIC homozygous 46298137 19 56088136 56088137 C T 35 INTERGENIC homozygous 46298138 19 56088452 56088453 C CGGGGAAATGGCTTTATGGACATAATGAAGTTTGAGA 18 INTERGENIC heterozygous 46411609 19 56088454 56088455 C CATCTTTCAATTTGGTGAGTTTTAAGT 18 INTERGENIC heterozygous 46411611 19 56088456 56088457 C CAGTT 17 INTERGENIC heterozygous 46411613 19 56088490 56088491 T C 9 INTERGENIC homozygous 46298139 19 56088497 56088498 T TCACACA 9 INTERGENIC homozygous 46298140 19 56088700 56088702 TG -- 20 INTERGENIC homozygous 46298141 19 56089892 56089893 C CA 27 INTERGENIC homozygous 46298142 19 56090333 56090334 C CACATACAT 26 INTERGENIC homozygous 46298143 19 56090377 56090395 ACACACACACACACACAC ------------------ 17 INTERGENIC homozygous 46411617 19 56090865 56090866 T TACACACACACACAC 6 INTERGENIC homozygous 46411619 19 56091087 56091088 T G 3 INTERGENIC homozygous 46298144 19 56091178 56091179 T G 9 INTERGENIC homozygous 46298145 19 56091211 56091212 A T 8 INTERGENIC homozygous 46298146 19 56091227 56091228 A - 12 INTERGENIC homozygous 46298147 19 56091312 56091313 A T 17 INTERGENIC homozygous 46298148 19 56091313 56091314 A G 17 INTERGENIC homozygous 46298149 19 56091418 56091419 T C 19 INTERGENIC homozygous 46298150 19 56091420 56091421 A G 20 INTERGENIC homozygous 46298151 19 56091487 56091488 C CAAAA 10 INTERGENIC possibly homozygous 46298152 19 56091689 56091690 G A 20 INTERGENIC homozygous 46298153 19 56091696 56091697 C A 20 INTERGENIC homozygous 46298154 19 56091725 56091726 C T 29 INTERGENIC homozygous 46298155 19 56091766 56091767 A T 24 INTERGENIC homozygous 46298156 19 56092056 56092057 A G 23 INTERGENIC homozygous 46298157 19 56092067 56092068 C T 24 INTERGENIC homozygous 46298158 19 56092090 56092091 T TA 20 INTERGENIC homozygous 46298159 19 56092100 56092101 G A 19 INTERGENIC homozygous 46298160 19 56092112 56092113 A T 18 INTERGENIC homozygous 46298161 19 56092149 56092150 T C 15 INTERGENIC homozygous 46298162 19 56092169 56092170 G A 14 INTERGENIC homozygous 46298163 19 56092191 56092192 T C 15 INTERGENIC homozygous 46298164 19 56092203 56092204 A C 17 INTERGENIC homozygous 46298165 19 56092258 56092259 C T 25 INTERGENIC homozygous 46298166 19 56092267 56092268 A C 29 INTERGENIC homozygous 46298167 19 56092299 56092300 A G 26 INTERGENIC possibly homozygous 46298168 19 56092337 56092338 A G 15 INTERGENIC homozygous 46298169 19 56092428 56092429 G A 34 INTERGENIC homozygous 46298170 19 56093325 56093326 G A 34 INTERGENIC homozygous 46298171 19 56093360 56093363 CAC --- 27 INTERGENIC homozygous 46298172 19 56093406 56093407 A ATCATCATCG 29 INTERGENIC homozygous 46382273 19 56093436 56093437 A AT 37 INTERGENIC homozygous 46382275 19 56093437 56093438 C CATCAT 23 INTERGENIC homozygous 46411623 19 56093523 56093524 A G 28 INTERGENIC homozygous 46298177 19 56094311 56094315 AAAC ---- 20 INTERGENIC homozygous 46298178 19 56094735 56094736 T C 21 INTERGENIC homozygous 46298179 19 56094781 56094782 T C 26 INTERGENIC homozygous 46298180 19 56094880 56094881 C T 30 INTERGENIC homozygous 46298181 19 56094883 56094884 C A 31 INTERGENIC homozygous 46298182 19 56096051 56096052 C A 23 INTERGENIC homozygous 46298191 19 56094898 56094899 C T 28 INTERGENIC homozygous 46298183 19 56095070 56095071 T A 29 INTERGENIC homozygous 46298184 19 56095529 56095530 A G 19 INTERGENIC homozygous 46298186 19 56095739 56095740 C T 21 INTERGENIC homozygous 46298187 19 56095785 56095786 G - 17 INTERGENIC homozygous 46298188 19 56096009 56096010 A G 23 INTERGENIC homozygous 46298189 19 56096034 56096035 C T 22 INTERGENIC homozygous 46298190 19 56096058 56096059 G GGA 25 INTERGENIC homozygous 46298192 19 56096131 56096132 C G 22 INTERGENIC homozygous 46298193 19 56096166 56096167 T C 18 INTERGENIC homozygous 46298194 19 56096321 56096322 A ATT 12 INTERGENIC homozygous 46298195 19 56096329 56096330 A - 12 INTERGENIC homozygous 46298196 19 56096655 56096662 CGAGCCC ------- 3 INTERGENIC homozygous 46298198 19 56096864 56096865 T C 20 INTERGENIC homozygous 46298205 19 56096959 56097087 TTTTTAAAATTTTTTAAATTTTTTAAAATTTTTTTAAAATTTTTAAATTTTTTTAAAATTTTAATTTTTAATTTTTTAAATTTTTTAAATTTAAATTTTTAATTTTTTAAAATTTTTTAAATTTTTAA -------------------------------------------------------------------------------------------------------------------------------- 21 INTERGENIC homozygous 46382277 19 56097117 56097118 C A 19 INTERGENIC homozygous 46298210 19 56097345 56097346 G A 32 INTERGENIC homozygous 46298211 19 56097391 56097392 T C 35 INTERGENIC homozygous 46298212 19 56097543 56097544 G C 33 INTERGENIC homozygous 46298213 19 56097556 56097557 C T 37 INTERGENIC homozygous 46298214 19 56097890 56097891 C T 33 INTERGENIC homozygous 46298215 19 56100384 56100385 G GA 5 INTERGENIC heterozygous 46298216 19 56100404 56100405 T TA 4 INTERGENIC heterozygous 46431699 19 56100405 56100406 A - 4 INTERGENIC heterozygous 46431701 19 56101536 56101537 T TA 19 INTERGENIC homozygous 46298217 19 56103584 56103585 C T 40 INTERGENIC homozygous 46298218 19 56103703 56103704 G A 31 INTERGENIC homozygous 46298219 19 56103769 56103770 C G 31 INTERGENIC homozygous 46298220 19 56103885 56103886 A G 28 INTERGENIC homozygous 46298221 19 56104514 56104515 C T 39 INTERGENIC homozygous 46298222 19 56104562 56104563 C T 42 INTERGENIC homozygous 46298223 19 56104677 56104678 T C 33 INTERGENIC homozygous 46298224 19 56104679 56104680 T C 32 INTERGENIC homozygous 46298225 19 56104745 56104746 A G 32 INTERGENIC homozygous 46298226 19 56104750 56104751 C CA 31 INTERGENIC homozygous 46298227 19 56104818 56104819 G A 28 INTERGENIC homozygous 46298228 19 56104931 56104932 T A 22 INTERGENIC homozygous 46298229 19 56105426 56105427 T TG 11 INTERGENIC homozygous 46298230 19 56105442 56105443 G T 11 INTERGENIC homozygous 46298231 19 56105559 56105560 G A 23 INTERGENIC homozygous 46298232 19 56106316 56106317 C T 31 INTERGENIC homozygous 46298233 19 56106357 56106358 A C 32 INTERGENIC homozygous 46298234 19 56106452 56106453 T G 21 INTERGENIC homozygous 46298235 19 56106583 56106584 T C 18 INTERGENIC homozygous 46298236 19 56106661 56106662 A G 26 INTERGENIC homozygous 46298237 19 56106727 56106728 T - 14 INTERGENIC homozygous 46298238 19 56106832 56106833 T C 26 INTERGENIC homozygous 46298239 19 56107448 56107449 G GAC 22 INTERGENIC possibly homozygous 46298240 19 56108053 56108054 A G 32 INTERGENIC possibly homozygous 46298241 19 56108103 56108104 A T 31 INTERGENIC homozygous 46298242 19 56108346 56108347 A G 25 INTERGENIC homozygous 46298243 19 56108607 56108608 C A 17 INTERGENIC homozygous 46298244 19 56109020 56109021 T A 28 INTERGENIC homozygous 46298245 19 56109055 56109056 G A 29 INTERGENIC homozygous 46298246 19 56109386 56109387 A G 34 INTERGENIC homozygous 46298247 19 56109512 56109513 G C 26 INTERGENIC homozygous 46298248 19 56109591 56109592 G A 33 INTERGENIC homozygous 46298249 19 56109658 56109659 C T 35 INTERGENIC homozygous 46298250 19 56109679 56109680 T C 31 INTERGENIC homozygous 46298251 19 56110003 56110004 G A 18 INTERGENIC homozygous 46298252 19 56110332 56110333 T C 35 INTERGENIC homozygous 46298253 19 56110678 56110679 G A 28 INTERGENIC homozygous 46298254 19 56110861 56110862 A G 17 INTERGENIC homozygous 46298255 19 56111198 56111199 C T 31 INTERGENIC homozygous 46298256 19 56111880 56111882 AT -- 19 INTERGENIC homozygous 46169545 19 56111911 56111913 TA -- 13 INTERGENIC homozygous 46298257 19 56112083 56112084 G T 28 INTERGENIC homozygous 46298258 19 56113208 56113209 A AT 36 INTERGENIC homozygous 46298259 19 56113331 56113332 A G 24 INTERGENIC homozygous 46298260 19 56113884 56113885 A T 29 INTERGENIC homozygous 46298261 19 56114266 56114267 G GTCTATCTATCTA 13 INTERGENIC homozygous 46411625 19 56114399 56114407 ATCTATCT -------- 22 INTERGENIC homozygous 46411627 19 56114831 56114832 G A 30 INTERGENIC homozygous 46298264 19 56114989 56114990 A G 37 INTERGENIC homozygous 46298265 19 56115021 56115022 C T 38 INTERGENIC homozygous 46298266 19 56115026 56115027 G T 39 INTERGENIC homozygous 46298267 19 56115461 56115462 G A 21 INTERGENIC homozygous 46298268 19 56115627 56115639 TCTCTCTCTCTC ------------ 10 INTERGENIC heterozygous 46431703 19 56115629 56115639 TCTCTCTCTC ---------- 10 INTERGENIC possibly homozygous 46411629 19 56115785 56115786 C A 23 INTERGENIC homozygous 46298269 19 56115943 56115953 ACACACACAC ---------- 5 INTERGENIC heterozygous 46411631 19 56115945 56115953 ACACACAC -------- 5 INTERGENIC heterozygous 46411633 19 56117610 56117611 T G 26 INTERGENIC homozygous 46298270 19 56117967 56117968 G GGT 3 INTERGENIC heterozygous 46169550 19 56117967 56117968 G GGTGT 3 INTERGENIC heterozygous 46446437 19 56118529 56118530 C T 16 INTERGENIC homozygous 46298271 19 56118711 56118712 G T 16 INTERGENIC homozygous 46298272 19 56118782 56118783 G C 23 INTERGENIC homozygous 46298273 19 56120196 56120204 GTGTGTGT -------- 9 INTERGENIC homozygous 46411637 19 56120984 56120985 G A 40 INTERGENIC homozygous 46298275 19 56122221 56122222 G A 27 INTERGENIC homozygous 46298281 19 56121334 56121342 GTTTGTTT -------- 22 INTERGENIC homozygous 46298276 19 56121386 56121387 T C 29 INTERGENIC homozygous 46298277 19 56121441 56121442 T G 27 INTERGENIC homozygous 46298278 19 56121974 56121975 T A 34 INTERGENIC homozygous 46298279 19 56122026 56122027 A G 28 INTERGENIC homozygous 46298280 19 56122774 56122775 A C 18 INTERGENIC homozygous 46298282