chr start stop reference nuc variant nuc depth genic status zygosity variant ID 1 52892066 52892067 G GT 12 INTERGENIC homozygous 60701318 1 52893790 52893802 TGTGTGTGTGTG ------------ 10 INTERGENIC possibly homozygous 60701319 1 52898435 52898436 A G 19 INTERGENIC homozygous 60701321