Resource Links
This page lists some of the genomic and bioinformatics resources that we are aware of which may be of interest to the users of RGD. If you would like a link to your web site added to this page, or if the link to your site needs to be updated, please contact us.
- Rat Resources
- Pre-clinical and translational Resources
- Genomic Resources
- Mouse Resources
- Human Resources
- Other Species Resources
- Bioinformatics Resources
Click here for links to Laboratory Resources such as sources of rat strains, antibodies, DNA, microarrays and more.
Rat Resources
- Baylor College of Medicine Rat Resources
- NCBI: Rat Genome Resources
- MDC: Max Delbruck Center for Molecular Medicine
- LONI Rat Atlas Image Database
- UNSW Embryology: Rat Development
- RRRC: Rat Resource and Research Center
- National BioResource Project for the Rat in Japan
- RIKEN BioResource Center: BAC Clone Browser
- Genevestigator: Gene expression data and analysis tool (requires Java)
- PolyGene Transgenic Services: Transgenic Model Development in Rats
Pre-clinical and translational Resources
Genomic Resources
- VCMAP Browser
- JBrowse: RGD’s Rat Genome Browser
- Alliance of Genome Resources: model organism and human comparative genomics
- GO Consortium: Gene Ontology Resource
- UCSC Genome Browser
- Ensembl Browser
- RIKEN ZENBU Genome Browser
- Ensembl’s BioMart Data Mining Tool
- NCBI Genome Data Viewer – Rat
- ECR Comparative Genome Browser
- VISTA – Comparative Sequence Alignment Viewer
- rVISTA – Regulatory Sequence Comparative Sequence Alignment Viewer
- SoftBerry Sequence Analysis Tools
- PipMaker – Comparative “Percent Identity Plot” Tool
- Genevestigator: Gene expression data and analysis tool (requires Java)
- BxSeqTools
- UCSF Computational Biology and Informatics Shared Resource (CBI)
Mouse Resources
- RGD: Mouse Consolidated Landing Page
- MGI: Mouse Genome Informatics
- Mouse Phenome Database
- Mouse Models of Human Cancer Database (MMHCdb), formerly Mouse Tumor Biology Database
- Mouse Gene Expression Database (GXD)
- RIKEN: FANTOM Functional Annotation of the Mammalian Genome
Human Resources
- RGD: Human Resources Consolidated Landing Page
- Human Genome Sequencing Center
- NHLBI: National Heart, Lung, and Blood Institute
- Department of Energy (DOE) Genomics
- HGPI: Human Genome Project Information
Other Species Resources
- Alliance of Genome Resources: model organism and human comparative genomics
- Saccharomyces Genome Database
- Flybase: Drosophila Genes & Genomes
- WormBase Consortium: C. elegans and related nematodes
- ZFIN: Zebrafish Information Network
- RGD: Chinchilla Landing Page
- RGD: Dog Landing Page
- RGD: Squirrel Landing Page
- RGD: Bonobo Landing Page
- RGD: Domestic Pig Landing Page
- RGD: Naked Mole-Rat Landing Page
- RGD: Green Monkey Landing Page
Bioinformatics Resources
- EBI: European Bioinformatics Institute
- The J. Craig Venter Institute (formerly TIGR)
- IMGS: International Mammalian Genome Society
- The Whitehead Institute for Biomedical Research at MIT
- NGRP: National Genetic Resources Program
- The Wellcome Trust Sanger Institute
- DDBJ: DNA Data Bank of Japan
- NHLBI Genetics and Genomics Programs
- The American Physiological Society
- The Physiological Society
- The Genetics Website at Wiley
- UCSF Computational Biology and Informatics Shared Resource (CBI)
- GO Consortium: Gene Ontology Resource
- GSAlign-sequence alignment tool
- LAST Whole Genome Alignment tool
