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Strain Registration

General

Strain: DA.PVG.1AV1-(D10Rat81-D10Rat238)/Kini

Symbol:

DA.PVG.1AV1-(D10Rat81-D10Rat238)/Kini

Strain:

DA.PVG.1AV1-(D10Rat81-D10Rat238)

Substrain:

Kini

RGD ID:

8552313

Citation ID:

RRID:RGD_8552313

Ontology ID:

RS:0003731

Also Known As:

DA.PVG.1AV1-(D10Rat81-D10Rat238)/Kini; DA.PVG.1AV1-Eae18a; NBRP Rat No: 0682

Type:

congenic

Available Source:

National BioResource Project for the Rat in Japan

Origination:

Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden

Description:

DA/Kini females were bred to PVG.1AV1/Kini males and male offspring selected for PVG alleles within the fragment. To ensure that mitochondrial DNA was inherited from the DA/Kini strain, female rats were from the DA/Kini strain throughout the breeding program.

Coat Color:

agouti

Last Known Status:

Cryopreserved Sperm

Research Usage

Neurobiology

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	48,574,589 - 48,574,797	RGD_MAPPER_PIPELINE
mRatBN7.2	10	48,075,363 - 60,222,446	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	49,863,561 - 62,214,000	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	10	49,641,148 - 61,927,099	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	10	49,618,846 - 62,685,691	RGD_MAPPER_PIPELINE	RGSC_v3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat81)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	48,574,589 - 48,574,797 (+)	Marker Load Pipeline
mRatBN7.2	10	48,075,363 - 48,075,571 (+)	MAPPER
Rnor_6.0	10	49,863,561 - 49,863,768	NCBI
Rnor_5.0	10	49,641,148 - 49,641,355	UniSTS
RGSC_v3.4	10	49,618,846 - 49,619,054	RGD
RGSC_v3.4	10	49,618,847 - 49,619,054	UniSTS
Celera	10	47,313,812 - 47,314,019	UniSTS
RGSC_v3.1	10	49,632,469 - 49,632,677	RGD
SHRSP x BN Map	10	41.9499	RGD
SHRSP x BN Map	10	41.9499	UniSTS
FHH x ACI Map	10	40.36	RGD

Flank 2 / 1 (D10Rat238)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	60,222,310 - 60,222,446 (+)	MAPPER
Rnor_6.0	10	62,213,865 - 62,214,000	NCBI
Rnor_5.0	10	61,926,964 - 61,927,099	UniSTS
RGSC_v3.4	10	62,685,555 - 62,685,691	RGD
RGSC_v3.4	10	62,685,556 - 62,685,691	UniSTS
Celera	10	59,251,945 - 59,252,078	UniSTS
RGSC_v3.1	10	62,699,178 - 62,699,314	RGD
SHRSP x BN Map	10	46.5699	UniSTS
SHRSP x BN Map	10	46.5699	RGD
FHH x ACI Map	10	50.56	RGD
Cytogenetic Map	10	q24	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_reproduction	Good breeding performance, sib mating	1302502

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.PVG.1AV1-(D10Rat81-D10Rat238)/Kini