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Strain Registration

Strain: SS.SR-(rs106870553-rs63922710)/Opaz

Symbol: SS.SR-(rs106870553-rs63922710)/Opaz
Strain: SS.SR-(rs106870553-rs63922710)
Substrain: Opaz
RGD ID: 7771600
Citation ID: RRID:RRRC_00611
Ontology ID: RS:0003599
Also Known As: S.R2B; SS.SR-(rs106870553-rs63922710)/Opaz; SS.SR-(SNP2786619-SNP2786811)/Opaz
Type: congenic
Available Source: Rat Resource and Research Center
Origination: Boston University School of Medicine, Boston, Massachusetts
Description: Congenic strain which was generated using the speed congenic strategy by backcrossing SS/JrHsd and SR/JrHsd parental strains
Last Known Status: Cryopreserved Sperm (as of 2019-02-05)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02183,864,092 - 203,646,445RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02203,270,720 - 223,091,129RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42176,635,705 - 196,312,011RGD_MAPPER_PIPELINERGSC3.4





Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.SR-(rs106870553-rs63922710)/Opaz" (RS:0003599)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Sex-specific effects on spatial learning and memory, and sex-independent effects on blood pressure of a <3.3 Mbp rat chromosome 2 QTL region in Dahl salt-sensitive rats. Herrera VL, etal., PLoS One. 2013 Jul 4;8(7):e67673. doi: 10.1371/journal.pone.0067673. Print 2013.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (rs106870553)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02183,864,092 - 183,864,092RGD
Rnor_5.02203,270,720 - 203,270,720RGD
RGSC_v3.42176,635,705 - 176,635,705RGD
Celera2164,196,006 - 164,196,006RGD

Flank 2 / 1 (rs63922710)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02203,646,445 - 203,646,445RGD
Rnor_5.02223,091,129 - 223,091,129RGD
RGSC_v3.42196,312,011 - 196,312,011RGD
Celera2181,129,140 - 181,129,140RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease these have similar blood pressure as compared to SS/JrHsd controls 7495755
strain_other the introgressed region harbors Bp295(BP-f4) and Memor8 (Nav-8) QTLs 7495755
strain_other males did not show any difference in spatial navigation in the Morris water maze 7495755
Database Acc Id Source(s)
RRRC RRRC:00611 RGD