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Strain Registration

Strain: P.NP-(D4Mgh16-D4Rat173)/Iusm

Symbol: P.NP-(D4Mgh16-D4Rat173)/Iusm
Strain: P.NP-(D4Mgh16-D4Rat173)
Substrain: Iusm
RGD ID: 7394818
Citation ID: RRID:RGD_7394818
Ontology ID: RS:0003561
Also Known As: ISCS-A; interval-specific congenic strain A; P.NP-(D4Mgh16-D4Rat173)/Iusm
Type: congenic
Available Source: Not Available
Origination: Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana
Description: P.NP-(D4Rat119-D4Rat55)/Iusm and iP rats were crossed to get F1 animals which were further backcrossed to iP rats for 10 generations, this was followed by intercross to generate the congenic strains, these animals were selected by marker-assisted selection
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2462,933,269 - 92,489,678RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0461,708,103 - 94,143,659RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0461,427,427 - 158,932,336RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4461,646,674 - 92,716,873RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Quantitative trait locus for body weight identified on rat chromosome 4 in inbred alcohol-preferring and -nonpreferring rats: potential implications for neuropeptide Y and corticotrophin releasing hormone 2. Spence JP, etal., Alcohol. 2013 Feb;47(1):63-7. doi: 10.1016/j.alcohol.2012.10.005.

Region

Position Markers

Flank 1 / 1 (D4Mgh16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2462,933,269 - 62,933,508 (+)MAPPER
Rnor_6.0461,708,103 - 61,708,341NCBI
Rnor_5.0461,427,427 - 61,427,664UniSTS
RGSC_v3.4461,646,674 - 61,646,915RGD
RGSC_v3.4461,646,675 - 61,646,915UniSTS
RGSC_v3.1461,922,804 - 61,923,045RGD
Celera457,985,798 - 57,986,036UniSTS
RH 3.4 Map4374.0UniSTS
RH 3.4 Map4374.0RGD
SHRSP x BN Map434.0UniSTS
SHRSP x BN Map434.0RGD
Cytogenetic Map4q22UniSTS

Flank 2 / 1 (D4Rat173)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2492,489,514 - 92,489,678 (+)MAPPER
Rnor_6.0494,143,498 - 94,143,659NCBI
Rnor_5.04158,932,175 - 158,932,336UniSTS
RGSC_v3.4492,716,711 - 92,716,873RGD
RGSC_v3.4492,716,712 - 92,716,873UniSTS
RGSC_v3.1492,961,067 - 92,961,494RGD
Celera487,238,854 - 87,239,015UniSTS
SHRSP x BN Map446.41RGD
SHRSP x BN Map446.41UniSTS
Cytogenetic Map4q24-q31UniSTS
Strain QTL Data
Symbol Name Trait
Bw126 Body weight QTL 126 body mass   (VT:0001259)    

Additional Information