Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: DA.PVG.1AV1-(D4Kini3-D4Mgh14)/Kini

Symbol: DA.PVG.1AV1-(D4Kini3-D4Mgh14)/Kini
Strain: DA.PVG.1AV1-(D4Kini3-D4Mgh14)
Substrain: Kini
RGD ID: 7240522
Citation ID: RRID:RGD_7240522
Ontology ID: RS:0003375
Also Known As: DA.PVG.1AV1-Hse1-R1; NBRP Rat No: 0701; DA.PVG.1AV1-(D4Kini3-D4Mgh14)/Kini; DA.PVG-Hse1-R1 (D4Kini3-D4Mgh14); DA.PVGc4-Hse1-R1 (D4Kini3-D4Mgh14)
Type: congenic
Available Source: Not Available
Origination: Department of Clinical Neuroscience, Neuroimmunology Unit, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden, National BioResource Project for the Rat in Japan
Description: DA/ZtmKini females were mated with PVG.1AV1/Kini males; breeding pair from N5 generation were crossed for 2 generation to get the desired congenic strain
Coat Color: agouti
Last Known Status: Cryopreserved Sperm
Research Usage Viral encephalitis (HSE)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8440,471,453 - 40,471,598RGD_MAPPER_PIPELINE
mRatBN7.2431,021,248 - 39,505,420RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0428,161,938 - 37,685,319RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0437,534,124 - 37,534,268RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4436,592,628 - 36,592,773RGD_MAPPER_PIPELINERGSC_v3.4






References

References - curated
# Reference Title Reference Citation
1. The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat. Abdelmagid N, etal., PLoS Pathog. 2012;8(6):e1002753. doi: 10.1371/journal.ppat.1002753. Epub 2012 Jun 28.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Kini3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2431,021,248 - 31,021,530 (+)MAPPER
Rnor_6.0428,161,938 - 28,162,217NCBI
Cytogenetic Map4 RGD

Flank 2 / 1 (D4Mgh14)
Rat AssemblyChrPosition (strand)Source
GRCr8440,471,453 - 40,471,598 (+)Marker Load Pipeline
mRatBN7.2439,505,275 - 39,505,420 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,319NCBI
Rnor_5.0437,534,124 - 37,534,268UniSTS
RGSC_v3.4436,592,628 - 36,592,773RGD
RGSC_v3.4436,592,629 - 36,592,773UniSTS
Celera434,949,819 - 34,949,963UniSTS
RGSC_v3.1436,711,169 - 36,711,313RGD
RH 3.4 Map4220.4UniSTS
RH 3.4 Map4220.4RGD
RH 2.0 Map4296.9RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Protected from Herpes Simplex Encephalitis (HSE) development in 45 days old rats. 1302502
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-21 DA.PVG.1AV1-(D4Kini3-D4Mgh14)/Kini    DA.PVG.1AV1-(D4Kini3-D4Mgh14)/Kini    Name updated 68913 APPROVED