Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj

Symbol: F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj
Strain: F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)
Substrain: Tj
RGD ID: 2304046
Citation ID: RRID:RGD_2304046
Ontology ID: RS:0001993
Also Known As: F344.Z-Leprob-(D7Rat16-D7Mgh20)/Tj; F344.Cg-Leprfa(D7Rat16-D7Mgh20)/Tj; F344.Cg-Leprfa(D7Rat16-D7Mgh20)/Tj; F.ZF/O-lepr; Nidd1/of; F.ZF/O-lepr; Nidd1/of; NBRP Rat No: 0179; F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj; F344.ZUC-(Lepr^[fa])(D7Rat16-D7Mgh20)/Tj
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: Established as speed congenics (5 generations, microsatellite marker) at the University of Tokushima School of Medicine, Institute for Animal Experimentation in 2002. Afterwards, maintained by sib mating.
Inbred Generations: F4
Last Known Status: Cryopreserved Embryo
Research Usage Diabetes Obesity
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27102,920,123 - 102,920,263RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07112,204,378 - 112,204,517RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.07112,143,411 - 112,143,550RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.47108,647,236 - 108,647,376RGD_MAPPER_PIPELINERGSC_v3.4






References

References - curated
# Reference Title Reference Citation
1. Single diabetic QTL derived from OLETF rat is a sufficient agent for severe diabetic phenotype in combination with leptin-signaling deficiency. Kose H, etal., Exp Diabetes Res. 2012;2012:858121. doi: 10.1155/2012/858121. Epub 2012 Dec 5.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Rat16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27102,920,123 - 102,920,263 (+)MAPPER
Rnor_6.07112,204,378 - 112,204,517NCBI
Rnor_5.07112,143,411 - 112,143,550UniSTS
RGSC_v3.47108,647,237 - 108,647,376UniSTS
RGSC_v3.47108,647,236 - 108,647,376RGD
Celera2025,557,526 - 25,557,946UniSTS
RGSC_v3.17108,681,467 - 108,681,606RGD
RH 3.4 Map7709.6RGD
RH 3.4 Map7709.6UniSTS
RH 2.0 Map7607.2RGD
SHRSP x BN Map759.07RGD
FHH x ACI Map750.06RGD
Cytogenetic Map20p11-q11UniSTS

Flank 2 / 1 (D7Mgh20)
Rat AssemblyChrPosition (strand)Source
RH 3.4 Map71092.1UniSTS
RH 3.4 Map71092.1RGD
RH 2.0 Map7772.4RGD
Cytogenetic Map7 RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Symbol updated 68687 APPROVED
2016-01-26 F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Symbol updated 68687 APPROVED
2016-01-26 F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Name updated 68913 APPROVED
2016-01-26 F344.ZUC-(Leprfa)(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Name updated 68913 APPROVED
2012-05-10 F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Name updated 68913 APPROVED
2012-05-10 F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    F344.ZUC-Leprfa(D7Rat16-D7Mgh20)/Tj    Name updated 68913 APPROVED