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Strain Registration

Strain: WF.DA-(D19Mit1-D19Mit6)/Kop

Symbol: WF.DA-(D19Mit1-D19Mit6)/Kop
Strain: WF.DA-(D19Mit1-D19Mit6)
Substrain: Kop
RGD ID: 1358921
Citation ID: RRID:RGD_1358921
Ontology ID: RS:0000999
Alleles: Nqo1
Also Known As: WF-T1D; WF.DA-(D19Wox8-D19Wox7)/Kop;WF.DA-(D19Wox8-D19Wox7)/Kop; WF.DA-Tcas5/Kop; WF.DA-Tcas5; NBRP Rat No: 0269; WDTscc1; WF.DA-Tscc1; WF.DA-(D19Mit1-D19Mit6)/Kop
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
Description: Congenic strain originated from a parental DA/Slc strain.
Coat Color: Albino
Inbred Generations: N5-F22
Last Known Status: Cryopreserved Embryo
Research Usage Cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81941,722,546 - 41,722,671RGD_MAPPER_PIPELINE
mRatBN7.21924,817,978 - 39,654,489RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01924,455,726 - 43,907,843RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.01935,433,730 - 54,715,514RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.41926,536,747 - 41,612,881RGD_MAPPER_PIPELINERGSC_v3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
WF.DA-(D19Mit1-D19Mit6)/KopRatWF.DA-(D19Mit1-D19Mit6)/Kop  IEA 7241799 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
WF.DA-(D19Mit1-D19Mit6)/KopRattongue integrity trait  EXP 1358147 RGD 

References

References - curated
# Reference Title Reference Citation
1. A speed congenic rat strain bearing the tongue cancer susceptibility locus Tscc1 from Dark-Agouti rats. Hirano M, etal., Cancer Lett 2005 May 2;.
2. A speed congenic rat strain bearing the tongue cancer susceptibility locus Tscc1 from Dark-Agouti rats. Hirano M, etal., Cancer Lett. 2006 Jan 18;231(2):185-91.
3. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines
5. Quantitative trait loci affecting 4-nitroquinoline 1-oxide-induced tongue carcinogenesis in the rat. Tanuma J, etal., Cancer Res 1998 Apr 15;58(8):1660-4
6. Five quantitative trait loci affecting 4-nitroquinoline 1-oxide-induced tongue cancer in the rat. Tanuma JI, etal., Jpn J Cancer Res 2001 Jun;92(6):610-6.

Region

Position Markers

Flank 1 / 1 (D19Wox8)
Rat AssemblyChrPosition (strand)Source
GRCr81941,722,546 - 41,722,671 (+)Marker Load Pipeline
mRatBN7.21924,817,978 - 24,818,103 (-)MAPPER
Rnor_6.01924,455,726 - 24,455,850NCBI
Rnor_5.01935,433,730 - 35,433,854UniSTS
RGSC_v3.41926,536,747 - 26,536,872RGD
RGSC_v3.41926,536,748 - 26,536,872UniSTS
Celera1924,357,643 - 24,357,761UniSTS
RGSC_v3.11926,541,573 - 26,541,698RGD
Cytogenetic Map19p11-q11UniSTS

Flank 2 / 1 (D19Mit6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,654,377 - 39,654,489 (+)MAPPER
Rnor_6.01943,907,732 - 43,907,843NCBI
Rnor_5.01954,715,403 - 54,715,514UniSTS
RGSC_v3.41941,612,770 - 41,612,881UniSTS
RGSC_v3.11941,617,650 - 41,617,762RGD
RH 3.4 Map19489.9RGD
RH 3.4 Map19489.9UniSTS
RH 2.0 Map19550.3RGD
Cytogenetic Map19q12UniSTS
Strain QTL Data
Symbol Name Trait
Tcas7 Tongue tumor susceptibility QTL 7 tongue integrity trait   (VT:0010553)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-12 WF.DA-(D19Mit1-D19Mit6)/Kop    WF.DA-(D19Mit1-D19Mit6)/Kop    Name updated 68913 APPROVED
2013-07-12 WF.DA-(D19Mit1-D19Mit6)/Kop    WF.DA-(D19Mit1-D19Mit6)/Kop    Name updated 68913 APPROVED
2012-05-15 WF.DA-(D19Mit1-D19Mit6)/Kop    WF.DA-(D19Mit1-D19Mit6)/Kop    Name updated 68913 APPROVED
2012-05-15 WF.DA-(D19Mit1-D19Mit6)/Kop    WF.DA-(D19Mit1-D19Mit6)/Kop    Name updated 68913 APPROVED