Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SHR.LEW-(D4Rat76-D4Mgh11)/Anra

Symbol: SHR.LEW-(D4Rat76-D4Mgh11)/Anra
Strain: SHR.LEW-(D4Rat76-D4Mgh11)
Substrain: Anra
RGD ID: 11528588
Citation ID: RRID:RGD_11528588
Ontology ID: RS:0004206
Also Known As: SLA16; SHR.LEW-Anxrr16; SHR.LEW-(D4Rat76-D4Mgh11); SHR.LEW-(D4Rat76-D4Mgh11); SHR.LEW-(D4Rat76-D4Mgh11)/Anra
Type: congenic
Available Source: Not Available
Origination: Laboratorio de Genetica do Comportamento, Departamento de Biologia Celular, Embriologia e Genetica, Centro de Ciencias Biologicas, Universidade Federal de Santa Catarina, Florianopolis, Santa Catarina, Brazil
Description: This congenic strain contains a LEW chromosome 4 segment containing a QTL affecting anxiety-related response transferred to the SHR background.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2485,253,748 - 167,139,601RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0486,312,589 - 168,047,091RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04150,964,994 - 230,565,226RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4484,886,545 - 171,204,531RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Low-anxiety rat phenotypes can be further reduced through genetic intervention. de Medeiros GF, etal., PLoS One. 2013 Dec 30;8(12):e83666. doi: 10.1371/journal.pone.0083666. eCollection 2013.
2. Identification of female-specific QTLs affecting an emotionality-related behavior in rats. Ramos A, etal., Mol Psychiatry 1999 Sep;4(5):453-62.

Region

Position Markers

Flank 1 / 1 (D4Rat76)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2485,253,748 - 85,253,946 (+)MAPPER
Rnor_6.0486,312,589 - 86,312,786NCBI
Rnor_5.04150,964,994 - 150,965,191UniSTS
RGSC_v3.4484,886,545 - 84,886,743RGD
RGSC_v3.4484,886,546 - 84,886,743UniSTS
RGSC_v3.1485,130,017 - 85,130,214RGD
Celera480,117,764 - 80,117,945UniSTS
RH 3.4 Map4529.1UniSTS
RH 3.4 Map4529.1RGD
FHH x ACI Map453.57UniSTS
FHH x ACI Map453.57RGD

Flank 2 / 1 (D4Mgh11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24167,139,447 - 167,139,601 (+)MAPPER
Rnor_6.04168,046,938 - 168,047,091NCBI
Rnor_5.04230,565,073 - 230,565,226UniSTS
RGSC_v3.44171,204,377 - 171,204,531RGD
RGSC_v3.44171,204,378 - 171,204,531UniSTS
RGSC_v3.14171,449,313 - 171,449,467RGD
Celera4155,742,437 - 155,742,588UniSTS
RH 3.4 Map41015.5UniSTS
RH 3.4 Map41015.5RGD
RH 2.0 Map41078.1RGD
SHRSP x BN Map487.2499RGD
FHH x ACI Map4107.8999RGD
Cytogenetic Map4 RGD
Strain QTL Data
Symbol Name Trait
Anxrr16 Anxiety related response QTL 16 locomotor behavior trait   (VT:0001392)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-14 SHR.LEW-(D4Rat76-D4Mgh11)/Anra    SHR.LEW-(D4Rat76-D4Mgh11   Symbol and/or name change 68913 APPROVED
2016-08-19 SHR.LEW-(D4Rat76-D4Mgh11   SHR.LEW-(D4Rat76-D4Mgh11   Name updated 68913 APPROVED
2016-08-19 SHR.LEW-(D4Rat76-D4Mgh11   SHR.LEW-(D4Rat76-D4Mgh11   Name updated 68913 APPROVED