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Strain Registration

General

Strain: SHRSP.SHR-(D1Mgh5-D1Rat213)/Izm

Symbol:

SHRSP.SHR-(D1Mgh5-D1Rat213)/Izm

Strain:

SHRSP.SHR-(D1Mgh5-D1Rat213)

Substrain:

Izm

RGD ID:

10043791

Citation ID:

RRID:RGD_10043791

Ontology ID:

RS:0003910

Also Known As:

SPrch1.2; SHRSP.SHR-(D1Mgh5-D1Rat213)/Izm; NBRP Rat No: 0710

Type:

congenic

Available Source:

National BioResource Project for the Rat in Japan

Origination:

Department of Functional Pathology, Shimane University Faculty of Medicine, Izumo, Japan

Description:

male SHRSP.SHR-(D1Rat93-D1Rat269)/Izm were crossed with female SHRSP/Izm and the offsprings were intercrossed, animals were genotyped to get the desired recombinants which were then backcrossed to SHRSP/Izm

Coat Color:

Albino

Inbred Generations:

F11

Last Known Status:

Cryopreserved Sperm

Research Usage

Cardio-Hypertension

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	87,558,587 - 90,905,414	RGD_MAPPER_PIPELINE
mRatBN7.2	1	78,430,536 - 81,777,720	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	79,689,548 - 83,282,814	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	1	80,946,174 - 84,537,228	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	1	78,134,304 - 81,548,909	RGD_MAPPER_PIPELINE	RGSC_v3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Mgh5)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	87,558,587 - 87,558,729 (+)	Marker Load Pipeline
mRatBN7.2	1	78,430,536 - 78,430,678 (+)	MAPPER
Rnor_6.0	1	79,689,548 - 79,689,689	NCBI
Rnor_5.0	1	80,946,174 - 80,946,315	UniSTS
RGSC_v3.4	1	78,134,304 - 78,134,446	RGD
RGSC_v3.4	1	78,134,305 - 78,134,446	UniSTS
Celera	1	72,898,184 - 72,898,325	UniSTS
RGSC_v3.1	1	78,212,415 - 78,212,557	RGD
RH 3.4 Map	1	791.5	UniSTS
RH 3.4 Map	1	791.5	RGD
RH 2.0 Map	1	501.0	RGD
SHRSP x BN Map	1	40.2499	RGD
FHH x ACI Map	1	40.1	RGD
Cytogenetic Map	1	q21	UniSTS

Flank 2 / 1 (D1Rat213)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	90,905,258 - 90,905,414 (+)	Marker Load Pipeline
mRatBN7.2	1	81,777,564 - 81,777,720 (+)	MAPPER
Rnor_6.0	1	83,282,659 - 83,282,814	NCBI
Rnor_5.0	1	84,537,073 - 84,537,228	UniSTS
RGSC_v3.4	1	81,548,754 - 81,548,909	UniSTS
RGSC_v3.4	1	81,548,753 - 81,548,909	RGD
Celera	1	76,204,150 - 76,204,305	UniSTS
RGSC_v3.1	1	81,626,865 - 81,627,020	RGD
RH 3.4 Map	1	841.1	UniSTS
RH 3.4 Map	1	841.1	RGD
FHH x ACI Map	1	42.2599	RGD
FHH x ACI Map	1	42.2599	UniSTS
Cytogenetic Map	1	q21	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_characteristics	Onset of a stroke caused by salt loading in this rat is later than in SHRSP rat.	1302502

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHRSP.SHR-(D1Mgh5-D1Rat213)/Izm