D2Rat187 Marker Search Result - Rat Genome Database

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Marker: D2Rat187

Symbol: D2Rat187
Previously known as: R0094-B12; oxsts10450; 
RGD ID: 40786
Expected Size: 146 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,251,721 - 11,251,855 (+)MAPPERmRatBN7.2
Rnor_6.028,847,136 - 8,847,267NCBIRnor6.0
Rnor_5.028,732,147 - 8,732,278UniSTSRnor5.0
Celera27,620,839 - 7,620,970UniSTS
SHRSP x BN Map20.0RGD
SHRSP x BN Map20.0UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Lnnr3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCTATCCCGTGAAGCTTTGC
Reverse Primer CATGGGTGCTGTGCATTG
 
Template 
AGATCAGAGGATCCCCACCGAAAGTTGTCTGTGGCCATGGGTGCTGTGCATTGGGGGCGCACAC
ACACATACACACACACACACACACACACACACACACACACACACACACACACGCACACACACAA
TTTAAAATTTTGAAATAGAACAAAATCACAACAGCAAAGCTTCACGGGATAGAGTGGTGTTATT
TTGCTTCATGAACATGCATTTGGAAATACCCGCATCTTAGTTCTATTTCCTGATGCTGTGATAA
AATGTGCTGACCAAAGCTACTTAGCAGAGGCAGTGTTTTTTCATTAATTTATGTGGGTACCGAG
CTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCA
CACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCA
CATTAATTGCGTTGCGCTCACTGCCCGCNTTTCANTNGGGAAANTGTCGTGCCAGCTGCATTAA
TGAATCGGCCACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCA
CAGTGAGAGGGACAGTGATTGCCTTCACGCTGGCCTGAGAGATTGCACAACGGTCAGTGGTTTG
CCCACAGGGAATCTGTTGATGTGTTCGAATGCAAATCTTATAATNNGATACCGGANNGTTATGN
TCATTGAAGACATATAGAGTGCCANTAAGGANCGTTNAGGGNCATNNCNCACACNTTTNGNNNC
GANATANGCTAGNC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41118210LOC120100653uncharacterized LOC12010065321124605711288544Rat

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777212654247Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 408147 UniSTS
UniSTS 227350 UniSTS