D3Rat1 Marker Search Result - Rat Genome Database

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Marker: D3Rat1

Symbol: D3Rat1
Previously known as: R0044-B04; oxsts6919; R044-B04; 
RGD ID: 36745
Expected Size: 159 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,026,691 - 168,026,850 (+)MAPPERmRatBN7.2
Rnor_6.03176,417,943 - 176,418,101NCBIRnor6.0
Rnor_5.03180,127,863 - 180,128,021UniSTSRnor5.0
RGSC_v3.43170,016,309 - 170,016,467UniSTSRGSC3.4
RGSC_v3.43170,016,252 - 170,016,653RGDRGSC3.4
RGSC_v3.13169,922,345 - 169,922,503RGD
Celera3164,558,222 - 164,558,366UniSTS
RH 3.4 Map31533.2RGD
RH 3.4 Map31533.2UniSTS
RH 2.0 Map31027.1RGD
SHRSP x BN Map391.5299RGD
FHH x ACI Map3104.89RGD
Cytogenetic Map3q43UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SHRSP.WKY-(D3Tkyo7-D3Rat1)/Tkyo   SHRSP.WKY-(D3Rat227-D3Rat1)/Tkyo   DA.WOKW-(D3Mgh5-D3Rat1)/K   SHR.WKY-(D3Tkyo7-D3Rat1)/Tkyo   SHR.WKY-(D3Mgh6-D3Rat1)/Tkyo   SHR.BN-(D3Rat159-D3Rat1)/Mco  
QTLs:   Rf10   Vnigr1   Vencon4   Slep7   Bw94   Scl63   Alcrsp26  
Genes:   Ythdf1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ACAGAGGGTCCTGAAAGGGT
Reverse Primer AATTCAGCCCATGACAAAGG
 
Template 
GCCTGCAGGTCGACTCTCAGAGGATCCCCCTGGTTTCTGATCAGTGGGTCTAGCAGCCACCCTG
TCTTCCCTTGCAATGCATCTAAATTCAGCCCATGACAAAGGTCTCTGATGCAAGGAGCATGAAC
CTCCCCCACCACACACACACACACACACACACACACACACACAAACACACACACACACACACAC
ACACACACAAACACTCAATGTTCTCTCTGTCCTAACCCTTTCAGGACCCTCTGTACAGCAGTCA
CATGTGTGTGTATGTGTGTTAGTGTGTCGNTCTGATTACCTGCCCCCCCCCATCCCCACTCTCT
CACATGTACCACACTGTCATGCTATTGGAGAAAGTGTATAAATAAAAAACTACACTCAAGAGGT
TAAATGTTCCATCCCTAGCATGGCCCTCCTAGGTGTGAATGAGAAAGGGGTACGAGCTCGAATT
CGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACAT
ACGAGCCGGNGCATAAAGTGTAAAGNTGGGGTGCTATGAGTGAGTACTCACATTATTGCGTTGG
TCA

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308932Ythdf1YTH N6-methyladenosine RNA binding protein F13168024660168040172Rat

Nucleotide Sequences
GenBank Nucleotide CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302818 UniSTS
  100303001 UniSTS
  100303630 UniSTS
  100303638 UniSTS
  100303641 UniSTS
  100423057 UniSTS
  296467 UniSTS
UniSTS 118743 UniSTS