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Gene: Bpgm (bisphosphoglycerate mutase) Rattus norvegicus

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Symbol:

Bpgm

Name:

bisphosphoglycerate mutase

RGD ID:

735018

Description:

Predicted to enable bisphosphoglycerate mutase activity. Involved in erythrocyte development. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in familial erythrocytosis 8. Orthologous to human BPGM (bisphosphoglycerate mutase); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2,3-bisphosphoglycerate mutase; Ab2-098; LOC296973

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BPGM (bisphosphoglycerate mutase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Bpgm (2,3-bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bpgm (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BPGM (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BPGM (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bpgm (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BPGM (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BPGM (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bpgm (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Bpgm (bisphosphoglycerate mutase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Bpgm (2,3-bisphosphoglycerate mutase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BPGM (bisphosphoglycerate mutase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bpgm (2,3-bisphosphoglycerate mutase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7059	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	GPM1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	GPM2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Saccharomyces cerevisiae (baker's yeast):	GPM3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	bpgm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	64,106,809 - 64,135,749 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	64,106,804 - 64,135,627 (+)	Ensembl				GRCr8
mRatBN7.2	4	63,139,730 - 63,168,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	63,140,018 - 63,168,581 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	68,098,223 - 68,126,740 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	64,013,920 - 64,042,437 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	62,416,337 - 62,444,854 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	61,912,210 - 61,940,697 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	61,912,210 - 61,940,696 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	61,650,881 - 61,679,069 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	61,858,884 - 61,888,007 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	58,192,196 - 58,220,785 (+)	NCBI		Celera
RGSC_v3.1	4	62,135,013 - 62,164,136 (+)	NCBI
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial erythrocytosis 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

alpha-naphthoflavone (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

Butylbenzyl phthalate (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

captan (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

decabromodiphenyl ether (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dimethyl sulfoxide (ISO)

dinophysistoxin 1 (ISO)

dioxygen (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

glycidyl methacrylate (ISO)

glycitein (ISO)

glycitin (ISO)

hydralazine (ISO)

indometacin (EXP)

leflunomide (ISO)

Licochalcone B (ISO)

metformin (EXP)

methotrexate (EXP)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

N-acetyl-L-cysteine (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

progesterone (ISO)

rotenone (EXP)

senecionine (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tolcapone (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to stress (ISO)

defense response to protozoan (ISO)

erythrocyte development (IDA,ISO)

establishment of blood-brain barrier (ISO)

glycolytic process (IEA,ISO)

neuroinflammatory response (ISO)

nucleoside phosphate metabolic process (ISO)

oxygen transport (ISO)

Cellular Component

cytosol (IBA)

Molecular Function

bisphosphoglycerate mutase activity (IBA,IEA,ISO)

catalytic activity (IEA)

intramolecular phosphotransferase activity (IEA)

isomerase activity (IEA)

phosphoglycerate mutase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fanconi syndrome pathway (ISO)

fructose-1,6-bisphosphatase deficiency pathway (ISO)

gluconeogenesis pathway (IEA,ISO)

glycogen storage disease type Ia pathway (ISO)

glycogen storage disease type Ib pathway (ISO)

glycogen storage disease type VII pathway (ISO)

glycolysis pathway (IEA,ISO)

glycolysis/gluconeogenesis pathway (IEA)

phosphoenolpyruvate carboxykinase deficiency pathway (ISO)

triosephosphate isomerase deficiency pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Compound heterozygosity in a complete erythrocyte bisphosphoglycerate mutase deficiency.	Lemarchandel V, etal., Blood. 1992 Nov 15;80(10):2643-9.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	Changes in enzyme activities involved in the degradation of 1,3-bisphosphoglycerate during erythropoiesis in rat bone marrow.	Pineda M, etal., Cell Biochem Funct. 1984 Oct;2(4):254-6.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Isolation, characterization, and structure of a mutant 89 Arg----Cys bisphosphoglycerate mutase. Implication of the active site in the mutation.	Rosa R, etal., J Biol Chem 1989 May 15;264(14):7837-43.
11.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:23533145

Genomics

Comparative Map Data

Bpgm
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	64,106,809 - 64,135,749 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	64,106,804 - 64,135,627 (+)	Ensembl				GRCr8
mRatBN7.2	4	63,139,730 - 63,168,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	63,140,018 - 63,168,581 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	68,098,223 - 68,126,740 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	64,013,920 - 64,042,437 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	62,416,337 - 62,444,854 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	61,912,210 - 61,940,697 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	61,912,210 - 61,940,696 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	61,650,881 - 61,679,069 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	61,858,884 - 61,888,007 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	58,192,196 - 58,220,785 (+)	NCBI		Celera
RGSC_v3.1	4	62,135,013 - 62,164,136 (+)	NCBI
Cytogenetic Map	4	q22	NCBI

BPGM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	134,646,853 - 134,679,816 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	134,646,811 - 134,679,816 (+)	Ensembl			hg38	GRCh38
GRCh37	7	134,331,605 - 134,364,568 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	133,982,095 - 134,015,108 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	129,068,953 - 129,101,988 (+)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI
HuRef	7	128,633,382 - 128,666,417 (+)	NCBI		HuRef
CHM1_1	7	134,265,830 - 134,298,456 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	135,954,938 - 135,987,472 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	133,675,849 - 133,708,886 (+)	NCBI

Bpgm
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	34,453,291 - 34,482,071 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	34,453,142 - 34,482,548 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	34,476,356 - 34,505,136 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	34,476,207 - 34,505,613 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	34,426,356 - 34,455,610 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	34,406,514 - 34,435,768 (+)	NCBI		MGSCv36	mm8
Celera	6	34,470,380 - 34,505,653 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	15.01	NCBI

Bpgm
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	7,866,693 - 7,883,641 (-)	Ensembl
ChiLan1.0	NW_004955494	7,867,295 - 7,889,440 (-)	NCBI	ChiLan1.0	ChiLan1.0

BPGM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	171,460,435 - 171,495,458 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	23,470,693 - 23,505,705 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	126,605,151 - 126,637,934 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	139,111,512 - 139,144,487 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	139,123,318 - 139,144,487 (+)	Ensembl			panPan2	panpan1.1

BPGM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	13,386,021 - 13,418,248 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	13,365,566 - 13,418,432 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	14,392,842 - 14,427,411 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	13,358,754 - 13,393,331 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	13,339,774 - 13,393,124 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	13,803,119 - 13,837,627 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	12,899,358 - 12,933,930 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	13,038,580 - 13,073,172 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bpgm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	21,009,042 - 21,032,454 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936579	1,141,598 - 1,164,630 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936579	1,141,637 - 1,164,554 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BPGM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	14,556,832 - 14,593,252 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	14,555,919 - 14,593,321 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	15,416,592 - 15,418,684 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BPGM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	103,336,777 - 103,369,396 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	103,336,809 - 103,372,186 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666072	236,243 - 268,628 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bpgm
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	15,145,011 - 15,163,978 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	15,139,919 - 15,162,721 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bpgm
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	105,146,707 - 105,170,222 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bpgm
167 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	80
Interacting mature miRNAs:	88
Transcripts:	ENSRNOT00000013569
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58079875	82597589	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58080146	80212111	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	59603319	80216952	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat

Markers in Region

BF393409

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	63,162,184 - 63,162,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	61,934,290 - 61,934,386	NCBI	Rnor6.0
Rnor_5.0	4	61,672,961 - 61,673,057	UniSTS	Rnor5.0
RGSC_v3.4	4	61,880,960 - 61,881,056	UniSTS	RGSC3.4
Celera	4	58,214,270 - 58,214,366	UniSTS
RH 3.4 Map	4	376.6	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH138377

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	63,167,775 - 63,167,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	61,939,892 - 61,940,011	NCBI	Rnor6.0
Rnor_5.0	4	61,678,264 - 61,678,383	UniSTS	Rnor5.0
RGSC_v3.4	4	61,887,202 - 61,887,321	UniSTS	RGSC3.4
Celera	4	58,219,980 - 58,220,099	UniSTS
RH 3.4 Map	4	376.0	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH132040

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	63,168,301 - 63,168,499 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	61,940,418 - 61,940,615	NCBI	Rnor6.0
Rnor_5.0	4	61,678,790 - 61,678,987	UniSTS	Rnor5.0
RGSC_v3.4	4	61,887,728 - 61,887,925	UniSTS	RGSC3.4
Celera	4	58,220,506 - 58,220,703	UniSTS
RH 3.4 Map	4	376.0	UniSTS
Cytogenetic Map	4	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY325190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HH770095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013569 ⟹ ENSRNOP00000013566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	64,106,804 - 64,135,101 (+)	Ensembl
mRatBN7.2 Ensembl	4	63,140,018 - 63,168,581 (+)	Ensembl
Rnor_6.0 Ensembl	4	61,912,210 - 61,940,696 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090717 ⟹ ENSRNOP00000070911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	64,119,076 - 64,135,627 (+)	Ensembl
mRatBN7.2 Ensembl	4	63,151,908 - 63,168,459 (+)	Ensembl
Rnor_6.0 Ensembl	4	61,924,013 - 61,940,573 (+)	Ensembl

RefSeq Acc Id:

NM_199382 ⟹ NP_955414

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	64,107,277 - 64,135,749 (+)	NCBI
mRatBN7.2	4	63,140,109 - 63,168,581 (+)	NCBI
Rnor_6.0	4	61,912,210 - 61,940,697 (+)	NCBI
Rnor_5.0	4	61,650,881 - 61,679,069 (+)	NCBI
RGSC_v3.4	4	61,858,884 - 61,888,007 (+)	RGD
Celera	4	58,192,196 - 58,220,785 (+)	RGD

Sequence:

show sequence

GGGGGAATCCTCCCTGGCACCTGCAGCACGGCGTCGCTGAGGACTGGGTGCTACTGGTGGTTTC
CTTGCAGCTGTACTGCTGTTCTCGAACCTCACCCAATTGAGAACTCCAGGGCAGCCCAGCCACC
AGCATGTCGAAGCACAGACTTATTATACTAAGACACGGAGAGGGCCAATGGAATAAGGAGAACC
GATTCTGTAGTTGGGTGGACCAGAAACTTAACAGTGACGGACTGGAGGAGGCTCGGAACTGTGG
GAGGCAGCTCAAAGCTCTCAACTTCGAGTTTGATCTCGTCTTCACGTCCATCCTTAACAGGTCC
ATTCACACAGCCTGGCTGATCCTGGAAGAGCTGGGGCAGGAGTGGGTTCCTGTGGAGAGCTCTT
GGCGTCTGAATGAGCGTCACTATGGAGCCTTGATTGGTCTCAACAGGGAGAAAATGGCTTTGAA
TCATGGTGAAGAGCAGGTAAGGCTCTGGAGGAGAAGCTACAACGTGACCCCACCTCCCATTGAG
GAGTCTCATCCCTTCTTCCATGAGATCTACAATGACCGGAGGTACAAAGTGTGCGACGTGCCCT
TGGATCAACTGCCACGTTCAGAAAGCTTGAAGGATGTTCTGGAAAGACTTCTTCCCTACTGGAA
GGAAAGGATTTCTCCGGAAATCTTGAAGGGCAAAACCGTTCTGATATCTGCTCATGGGAATAGC
AGTAGAGCCCTCCTGAAACATCTAGAAGGTATCTCAGACGAGGATATCATCAACATCACTCTGC
CCACTGGAGTTCCGATTCTGCTGGAGTTGGATGAGAACCTGCGTGCCATTAGGCCTCACCAGTT
CTTGGGCAACCAGGAGGCCATCCAGGCAGCCATTAAGAAAGTGGATGATCAAGGGAAAGTGAGA
CAAAACAAATAATAAAGTACGACCAGGAGCAAGCAGAGTGCGGGGTGGTGTGTAGTGTGTTTCC
CCTGTGGGCTTCTCCCCTCCTCCCACTGGCTCACTTCCTCCACGGCTGAGTGGTAGAGTTTGTG
TAGATAACTAGGTAGTTGTCATGGCCCAGACGTGACCTTTGGATGTCTAAGTCTAACTTAACTT
CTGCTCCTCCCGTTTGATTTAACATTGCAAAGTAGTAGCCAGCAGGGTTTGACCAAGGTTGTTT
TTTGTTTTAGAGACAGGAGAGTAACAGGATGAAATTGTTTATCACTTAACAAGTCATCACTGAG
TCCCCACTGGCAGTCACTGTTCCAATGAGCAGGTCACTGTTTTATTCCACAATAGTTCCTGAGA
AGAGTGAACACTACTAGGTAGCACTTGGGCAGTTTACACCAGAGGCCCATCGAATGGCAGAGTC
ATGGATGGGCCCTTGAGAAGGCATCCGAGAACCACAGTAGTACAAGGCCCTTTGATTTCCCCCA
GCCCACTGCCATCCTGTTTGCCGTCAGTAAAATCAACTTCAGCCAGTGAGAAGGACCGGGATTG
GCACAGCCGTAGCCGTTTATGTTCTTCTGTTTCTCTTTGAGCTTTTGAACTTTAACCTTTGGGG
ACTTAGCAGTTAGATGAAAATAAAGCTTTGTGACTACAAACAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236259 ⟹ XP_006236321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	64,117,638 - 64,135,749 (+)	NCBI
mRatBN7.2	4	63,150,852 - 63,168,581 (+)	NCBI
Rnor_6.0	4	61,922,941 - 61,940,697 (+)	NCBI
Rnor_5.0	4	61,650,881 - 61,679,069 (+)	NCBI

Sequence:

show sequence

CACCGCACCTCGGTGAAGCGCTCTTCCAGGGGTAGACTGATGCAGCCGGCTCTCCAGGTTCTCC
GGAGACAGAGTAGACAAGGGCAACAGCAGAAGGGAGTTCAGACTCGCATAGCGTTGTTGTCCAA
CTTTATTAGATTCTCCTCACAGTATGTGGCTGATCTGTACTGCTGTTCTCGAACCTCACCCAAT
TGAGAACTCCAGGGCAGCCCAGCCACCAGCATGTCGAAGCACAGACTTATTATACTAAGACACG
GAGAGGGCCAATGGAATAAGGAGAACCGATTCTGTAGTTGGGTGGACCAGAAACTTAACAGTGA
CGGACTGGAGGAGGCTCGGAACTGTGGGAGGCAGCTCAAAGCTCTCAACTTCGAGTTTGATCTC
GTCTTCACGTCCATCCTTAACAGGTCCATTCACACAGCCTGGCTGATCCTGGAAGAGCTGGGGC
AGGAGTGGGTTCCTGTGGAGAGCTCTTGGCGTCTGAATGAGCGTCACTATGGAGCCTTGATTGG
TCTCAACAGGGAGAAAATGGCTTTGAATCATGGTGAAGAGCAGGTAAGGCTCTGGAGGAGAAGC
TACAACGTGACCCCACCTCCCATTGAGGAGTCTCATCCCTTCTTCCATGAGATCTACAATGACC
GGAGGTACAAAGTGTGCGACGTGCCCTTGGATCAACTGCCACGTTCAGAAAGCTTGAAGGATGT
TCTGGAAAGACTTCTTCCCTACTGGAAGGAAAGGATTTCTCCGGAAATCTTGAAGGGCAAAACC
GTTCTGATATCTGCTCATGGGAATAGCAGTAGAGCCCTCCTGAAACATCTAGAAGGTATCTCAG
ACGAGGATATCATCAACATCACTCTGCCCACTGGAGTTCCGATTCTGCTGGAGTTGGATGAGAA
CCTGCGTGCCATTAGGCCTCACCAGTTCTTGGGCAACCAGGAGGCCATCCAGGCAGCCATTAAG
AAAGTGGATGATCAAGGGAAAGTGAGACAAAACAAATAATAAAGTATGACCAGGAGCAAGCAGA
GTGCGGGGTGGTGTGTAGTGTGTTCCCCTGTGGGCTTCTCCCCTCCTCCCACTGGCTCACTTCC
TCCACGGCTGAGTGGTAGAGTTTGTGTAGATAACTAGGTAGTTGTCATGGCCCAGACGTGACCT
TTGGATGTCTAAGTCTAACTTAACTTCTGCTCCTCCCGTTTGATTTAACATTGCAAAGTAGTAG
CCAGCAGGGTTTGACCAAGGTTGTTTTTTGTTTTAGAGACAGGAGAGTAACAGGATGAAATTGT
TTATCACTTAACAAGTCATCACTGAGTCCCCACTGGCAGTCACTGTTCCAATGAGCAGGTCACT
GTTTTATTCCACAATAGTTCCTGAGAAGAGTGAACACTACTAGGTAGCACTTGGGCAGTTTACA
CCAGAGGCCCATCGAATGGCAGAGTCATGGATGGGCCCTTGAGAAGGCATCCGAGAACCACAGT
AGTACAAGGCCCTTTGATTTCCCCCAGCCCACTGCCATCCTGTTTGCCGTCAGTAAAATCAACT
TCAGCCAGTGAGAAGGACCGGGATTGGCACAGCCGTAGCCGTTTATGTTCTTCTGTTTCTCTTT
GAGCTTTTGAACTTTAACCTTTGGGGACTTAGCAGTTAGATGAAAATAAAGCTTTGTGACTACA
AACAGCA

hide sequence

RefSeq Acc Id:

XM_039107293 ⟹ XP_038963221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	64,106,809 - 64,135,749 (+)	NCBI
mRatBN7.2	4	63,139,730 - 63,168,581 (+)	NCBI

RefSeq Acc Id:

XM_063285747 ⟹ XP_063141817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	64,107,231 - 64,135,749 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_955414	(Get FASTA)	NCBI Sequence Viewer
	XP_006236321	(Get FASTA)	NCBI Sequence Viewer
	XP_038963221	(Get FASTA)	NCBI Sequence Viewer
	XP_063141817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62240	(Get FASTA)	NCBI Sequence Viewer
	AAP92591	(Get FASTA)	NCBI Sequence Viewer
	CBX85765	(Get FASTA)	NCBI Sequence Viewer
	EDM15310	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013566
	ENSRNOP00000013566.4
	ENSRNOP00000070911.1

RefSeq Acc Id:

NP_955414 ⟸ NM_199382

- UniProtKB:

Q6P6G4 (UniProtKB/TrEMBL), F7F6N0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKHRLIILRHGEGQWNKENRFCSWVDQKLNSDGLEEARNCGRQLKALNFEFDLVFTSILNRSI
HTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREKMALNHGEEQVRLWRRSYNVTPPPIEE
SHPFFHEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWKERISPEILKGKTVLISAHGNSS
RALLKHLEGISDEDIINITLPTGVPILLELDENLRAIRPHQFLGNQEAIQAAIKKVDDQGKVRQ
NK

hide sequence

RefSeq Acc Id:	XP_006236321 ⟸ XM_006236259
- Peptide Label:	isoform X1
- UniProtKB:	Q6P6G4 (UniProtKB/TrEMBL), F7F6N0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKHRLIILRHGEGQWNKENRFCSWVDQKLNSDGLEEARNCGRQLKALNFEFDLVFTSILNRSI HTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREKMALNHGEEQVRLWRRSYNVTPPPIEE SHPFFHEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWKERISPEILKGKTVLISAHGNSS RALLKHLEGISDEDIINITLPTGVPILLELDENLRAIRPHQFLGNQEAIQAAIKKVDDQGKVRQ NK hide sequence

Ensembl Acc Id:

ENSRNOP00000070911 ⟸ ENSRNOT00000090717

Ensembl Acc Id:

ENSRNOP00000013566 ⟸ ENSRNOT00000013569

RefSeq Acc Id:	XP_038963221 ⟸ XM_039107293
- Peptide Label:	isoform X1
- UniProtKB:	Q6P6G4 (UniProtKB/TrEMBL), F7F6N0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141817 ⟸ XM_063285747
- Peptide Label:	isoform X1
- UniProtKB:	F7F6N0 (UniProtKB/TrEMBL), Q6P6G4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TP58-F1-model_v2	AlphaFold	Q7TP58	1-395	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692954

Promoter ID:

EPDNEW_R3478

Type:

initiation region

Name:

Bpgm_1

Description:

bisphosphoglycerate mutase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	61,912,210 - 61,912,270	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735018	AgrOrtholog
BioCyc Gene	G2FUF-45274	BioCyc
BioCyc Pathway	PWY-6405 [Rapoport-Luebering glycolytic shunt]	BioCyc
BioCyc Pathway Image	PWY-6405	BioCyc
Ensembl Genes	ENSRNOG00000010133	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013569	ENTREZGENE
	ENSRNOT00000013569.6	UniProtKB/TrEMBL
	ENSRNOT00000090717.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1240	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6887677	IMAGE-MGC_LOAD
InterPro	His_Pase_superF_clade-1	UniProtKB/TrEMBL
	His_PPase_superfam	UniProtKB/TrEMBL
	PG/BPGM_mutase_AS	UniProtKB/TrEMBL
	Phosphogly_mut1	UniProtKB/TrEMBL
KEGG Report	rno:296973	UniProtKB/TrEMBL
MGC_CLONE	MGC:72978	IMAGE-MGC_LOAD
NCBI Gene	296973	ENTREZGENE
PANTHER	Phosphogly_mut1	UniProtKB/TrEMBL
Pfam	PGAM	UniProtKB/TrEMBL
PhenoGen	Bpgm	PhenoGen
PIRSF	6PFK_2-Ptase	UniProtKB/TrEMBL
PROSITE	PG_MUTASE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010133	RatGTEx
SMART	PGAM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53254	UniProtKB/TrEMBL
UniProt	F7F6N0	ENTREZGENE, UniProtKB/TrEMBL
	Q6P6G4	ENTREZGENE, UniProtKB/TrEMBL
	Q7TP58_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-02	Bpgm	bisphosphoglycerate mutase	Bpgm	2,3-bisphosphoglycerate mutase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Bpgm	2,3-bisphosphoglycerate mutase	LOC296973		Symbol updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways