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Gene: Sgtb (small glutamine rich tetratricopeptide repeat co-chaperone beta) Rattus norvegicus

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Symbol:

Sgtb

Name:

small glutamine rich tetratricopeptide repeat co-chaperone beta

RGD ID:

727976

Description:

Enables Hsp70 protein binding activity and identical protein binding activity. Involved in protein heterooligomerization and protein homooligomerization. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

beta-SGT; Sgt2; small glutamine rich protein with tetratricopeptide repeats 2; small glutamine rich tetratricopeptide repeat containing beta; small glutamine-rich protein with tetratricopeptide repeats 2; small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta; small glutamine-rich tetratricopeptide repeat-containing protein beta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	36,966,840 - 37,003,318 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	36,966,838 - 37,003,311 (+)	Ensembl				GRCr8
mRatBN7.2	2	35,233,045 - 35,269,527 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,233,042 - 35,269,518 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,346,065 - 42,379,852 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,404,761 - 40,438,549 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,261,478 - 35,295,227 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,185,938 - 34,222,428 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,186,091 - 34,219,802 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,314,253 - 53,350,728 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,031,975 - 35,065,686 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,209,705 - 31,243,401 (+)	NCBI		Celera
RGSC_v3.1	2	34,952,343 - 34,986,055 (+)	NCBI
Cytogenetic Map	2	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

camptothecin (ISO)

carbamazepine (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dichloroacetic acid (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

ivermectin (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

poly(I:C) (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamoxifen (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

post-translational protein targeting to endoplasmic reticulum membrane (IBA)

protein heterooligomerization (IDA,IEA)

protein homooligomerization (IDA,IEA)

Cellular Component

membrane (IBA)

TRC complex (IBA)

Molecular Function

Hsp70 protein binding (IPI)

identical protein binding (IDA,IEA)

molecular adaptor activity (IBA)

protein binding (ISO)

protein-folding chaperone binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	A brain-specific isoform of small glutamine-rich tetratricopeptide repeat-containing protein binds to Hsc70 and the cysteine string protein.	Tobaben S, etal., J Biol Chem 2003 Oct 3;278(40):38376-83. Epub 2003 Jul 23.

Additional References at PubMed

PMID:22871113	PMID:23820636

Genomics

Comparative Map Data

Sgtb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	36,966,840 - 37,003,318 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	36,966,838 - 37,003,311 (+)	Ensembl				GRCr8
mRatBN7.2	2	35,233,045 - 35,269,527 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,233,042 - 35,269,518 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,346,065 - 42,379,852 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,404,761 - 40,438,549 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,261,478 - 35,295,227 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,185,938 - 34,222,428 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,186,091 - 34,219,802 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,314,253 - 53,350,728 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,031,975 - 35,065,686 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,209,705 - 31,243,401 (+)	NCBI		Celera
RGSC_v3.1	2	34,952,343 - 34,986,055 (+)	NCBI
Cytogenetic Map	2	q13	NCBI

SGTB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	65,665,928 - 65,723,013 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	65,665,928 - 65,723,035 (-)	Ensembl			hg38	GRCh38
GRCh37	5	64,961,755 - 65,017,936 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	64,997,511 - 65,053,697 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	64,999,553 - 65,053,652	NCBI
Celera	5	61,960,213 - 62,016,409 (-)	NCBI		Celera
Cytogenetic Map	5	q12.3	NCBI
HuRef	5	61,917,765 - 61,976,027 (-)	NCBI		HuRef
CHM1_1	5	64,961,442 - 65,017,635 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	66,487,700 - 66,547,014 (-)	NCBI		T2T-CHM13v2.0

Sgtb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	104,246,233 - 104,278,369 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	104,246,249 - 104,278,243 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	104,109,723 - 104,141,861 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	104,109,741 - 104,141,735 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	104,899,870 - 104,931,532 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	105,230,172 - 105,261,834 (+)	NCBI		MGSCv36	mm8
Celera	13	108,500,860 - 108,532,740 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	56.23	NCBI

Sgtb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	3,374,644 - 3,426,284 (+)	Ensembl
ChiLan1.0	NW_004955446	3,374,363 - 3,426,284 (+)	NCBI	ChiLan1.0	ChiLan1.0

SGTB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	48,197,335 - 48,256,170 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	46,350,080 - 46,409,797 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	48,282,532 - 48,341,083 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	49,938,579 - 49,991,778 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	49,938,579 - 49,995,514 (+)	Ensembl			panPan2	panpan1.1

SGTB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	51,397,606 - 51,446,512 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	51,402,856 - 51,445,278 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	48,353,481 - 48,401,108 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	51,888,977 - 51,936,615 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	51,892,384 - 51,936,588 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	48,948,720 - 48,996,130 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	49,738,052 - 49,785,443 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	50,630,250 - 50,677,679 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sgtb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	194,544,704 - 194,587,773 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	3,481,166 - 3,521,038 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	3,481,172 - 3,524,241 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SGTB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	44,186,562 - 44,225,633 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	44,184,536 - 44,225,896 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	47,536,146 - 47,574,847 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SGTB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	61,858,519 - 61,918,011 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	61,862,279 - 61,917,539 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	10,501,021 - 10,561,494 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sgtb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	4,162,332 - 4,211,078 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624815	4,162,308 - 4,211,078 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sgtb
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	193,224,031 - 193,258,601 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sgtb
271 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	350
Count of miRNA genes:	211
Interacting mature miRNAs:	269
Transcripts:	ENSRNOT00000016129
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH132947

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,231,684 - 35,232,738 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,184,591 - 34,185,644	NCBI	Rnor6.0
Rnor_5.0	2	53,312,891 - 53,313,944	UniSTS	Rnor5.0
RGSC_v3.4	2	35,030,475 - 35,031,528	UniSTS	RGSC3.4
Celera	2	31,208,205 - 31,209,258	UniSTS
RH 3.4 Map	2	139.8	UniSTS
Cytogenetic Map	2	q13	UniSTS

BE097576

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,255,745 - 35,255,962 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,208,652 - 34,208,868	NCBI	Rnor6.0
Rnor_5.0	2	53,336,952 - 53,337,168	UniSTS	Rnor5.0
RGSC_v3.4	2	35,054,536 - 35,054,752	UniSTS	RGSC3.4
Celera	2	31,232,250 - 31,232,466	UniSTS
RH 3.4 Map	2	123.5	UniSTS
Cytogenetic Map	2	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	89	59	6	353	189	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_181629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF368280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016129 ⟹ ENSRNOP00000016129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	36,966,838 - 37,003,311 (+)	Ensembl
mRatBN7.2 Ensembl	2	35,233,042 - 35,269,518 (+)	Ensembl
Rnor_6.0 Ensembl	2	34,186,091 - 34,219,802 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105998 ⟹ ENSRNOP00000083035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	36,966,838 - 37,003,311 (+)	Ensembl
mRatBN7.2 Ensembl	2	35,233,042 - 35,269,518 (+)	Ensembl

RefSeq Acc Id:

NM_181629 ⟹ NP_853660

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	36,966,981 - 37,000,692 (+)	NCBI
mRatBN7.2	2	35,233,185 - 35,266,899 (+)	NCBI
Rnor_6.0	2	34,186,091 - 34,219,802 (+)	NCBI
Rnor_5.0	2	53,314,253 - 53,350,728 (+)	NCBI
RGSC_v3.4	2	35,031,975 - 35,065,686 (+)	RGD
Celera	2	31,209,705 - 31,243,401 (+)	RGD

Sequence:

show sequence

GCTCCGAGGACCGCGGGGGCAGGCGGACCCGCTTCCCGACGCCCCCGGGCCCGCAGCCGTCATC
TCGTGCTCTCTTAGCTGGAGGTATTTAGGCATCTAAAATGTCATCTGTGAAGCCCCTAGTTTAT
GCAGTTATTCGTTTCTTGCGGGAACAAAGCCAGATGGATGCTTACACTTCTGATGAACAAGAAA
GTTTGGAAGTTGCAATCCAGTGTTTGGAGACCGTCTTTAAGATCAGTCCCGAAGATACACATCT
GGCCGTTTCACAGCCTTTGACAGAAATGTTCACCAACTCCGTCTGTAAGAATGACATACGGCCG
CTTTCTAACTCAGTGCCCGAAGATGTGGGAAAGGCCGACCAGCTGAAGGATGAAGGCAATAACC
ACATGAAAGAAGAAAACTACGCGGCCGCGGTGGACTGTTACACGCAGGCAATAGAACTGGATCC
GAACAATGCCGTTTATTATTGTAACAGGGCGGCCGCTCAAAGCAAACTAAGTCACTACACAGAT
GCAATCAAGGACTGTGAGAAAGCCATCGCAATTGATTCAAAATACAGCAAGGCCTACGGAAGGA
TGGGGCTAGCTCTCACTGCCATGAATAAGTTTGAAGAGGCAGTTACAAGCTACCAGAAGGCACT
GGATCTTGATCCTGAAAACGACTCCTATAAGTCAAATCTGAAAATAGCAGAGCAGAAGTTAAGA
GAGGTATCTAGTCCTACAGGAACTGGGTTGACCTTTGACATGGCCAGCTTGATAAATAACCCGG
CCTTCATCACCATGGCTGCAAGTTTAATGCAGAACCCTCAAGTTCAGCAGCTGATGTCAGGGAT
GATGACAAATGCCATCGGAGGACCTGCTGCTGGAGTTGGAGGCCTAACAGACCTGTCTAGCCTT
ATCCAAGCGGGGCAGCAGTTTGCACAGCAGATACAGCAACAGAATCCTGAACTCATAGAGCAGC
TGAGAAATCACATCCGGAGCAGATCCTTCAGCAGCAGCACTGAGGAACACTCCTGACTTGACCA
GGACCCTCGCCCCAGTACAAACATCCCGACATGTACACTTGTAGATAATAGCCAAAAACAAAGT
AACAAAAACCACCCTGTACAATGTCTGAAAATAACGAGGAAAGTCTCCTGTGTAAACCTGAGAA
CATACATCTGTTTAGGTAATAGTTTATCACAAGCAGACTTGAACATAATACAGACTCCTCTGGA
AAGAAATGGTCAGTAACCTTGTTAAGGGCAAATACAGCCTTGGGACAAGGGTCCATCCATTTTA
AAACTTTTATCATCCTATTTGTATATTAGACTTAGCACAGAGTATATTTATTGAATAGTAGGGC
TATTTATTGGAAAGTTCTTTAGCCACAGGTTTCCCTAGGCAGTGGTTTTGAGTGGGGTGATGCT
GGTTTAGAAGACATGTGCTTGGTAGCACGTCGGGAGAGAAGCGTTGGCATGTGCTACCGTCAGT
GACACG

hide sequence

RefSeq Acc Id:

XM_006231882 ⟹ XP_006231944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	36,966,843 - 37,003,318 (+)	NCBI
mRatBN7.2	2	35,233,045 - 35,269,527 (+)	NCBI
Rnor_6.0	2	34,185,938 - 34,222,428 (+)	NCBI
Rnor_5.0	2	53,314,253 - 53,350,728 (+)	NCBI

Sequence:

show sequence

TCCGTGCCCCGCTCCGCCCCTGGGGCGGATCCAGCAAGCCCTGTGGTCCGAGAGCCTAGCGAGC
AGCCGGGTGGGCTGAGGGGGCGGCGGCAGCGTTGGAGCCGGGGAAGTTTGGGAGACGTGGCCCC
ATCTGCGATCCTGAGCACCCCTCAAGCTCCGAGGACCGCGGGGGCAGGCGGACCCGCTTCCCGA
CGCCCCCGGGCCCGCAGCCGTCATCTCGTGCTCTCTTAGCTGGTAAGGGGGTTTCTATCTGGAA
AGGGAGGTATTTAGGCATCTAAAATGTCATCTGTGAAGCCCCTAGTTTATGCAGTTATTCGTTT
CTTGCGGGAACAAAGCCAGATGGATGCTTACACTTCTGATGAACAAGAAAGTTTGGAAGTTGCA
ATCCAGTGTTTGGAGACCGTCTTTAAGATCAGTCCCGAAGATACACATCTGGCCGTTTCACAGC
CTTTGACAGAAATGTTCACCAACTCCGTCTGTAAGAATGACATACGGCCGCTTTCTAACTCAGT
GCCCGAAGATGTGGGAAAGGCCGACCAGCTGAAGGATGAAGGCAATAACCACATGAAAGAAGAA
AACTACGCGGCCGCGGTGGACTGTTACACGCAGGCAATAGAACTGGATCCGAACAATGCCGTTT
ATTATTGTAACAGGGCGGCCGCTCAAAGCAAACTAAGTCACTACACAGATGCAATCAAGGACTG
TGAGAAAGCCATCGCAATTGATTCAAAATACAGCAAGGCCTACGGAAGGATGGGGCTAGCTCTC
ACTGCCATGAATAAGTTTGAAGAGGCAGTTACAAGCTACCAGAAGGCACTGGATCTTGATCCTG
AAAACGACTCCTATAAGTCAAATCTGAAAATAGCAGAGCAGAAGTTAAGAGAGGTATCTAGTCC
TACAGGAACTGGGTTGACCTTTGACATGGCCAGCTTGATAAATAACCCGGCCTTCATCACCATG
GCTGCAAGTTTAATGCAGAACCCTCAAGTTCAGCAGCTGATGTCAGGGATGATGACAAATGCCA
TCGGAGGACCTGCTGCTGGAGTTGGAGGCCTAACAGACCTGTCTAGCCTTATCCAAGCGGGGCA
GCAGTTTGCACAGCAGATACAGCAACAGAATCCTGAACTCATAGAGCAGCTGAGAAATCACATC
CGGAGCAGATCCTTCAGCAGCAGCACTGAGGAACACTCCTGACTTGACCAGGACCCTCGCCCCA
GTACAAACATCCCGACATGTACACTTGTAGATAATAGCCAAAAACAAAGTAACAAAAACCACCC
TGTACAATGTCTGAAAATAACGAGGAAAGTCTCCTGTGTAAACCTGAGAACATACATCTGTTTA
GGTAATAGTTTATCACAAGCAGACTTGAACATAATACAGACTCCTCTGGAAAGAAATGGTCAGT
AACCTTGTTAAGGGCAAATACAGCCTTGGGACAAGGGTCCATCCATTTTAAAACTTTTATCATC
CTATTTGTATATTAGACTTAGCACAGAGTATATTTATTGAATAGTAGGGCTATTTATTGGAAAG
TTCTTTAGCCACAGGTTTCCCTAGGCAGTGGTTTTGAGTGGGGTGATGCTGGTTTAGAAGACAT
GTGCTTGGTAGCACGTCGGGAGAGAAGCGTTGGCATGTGCTACCGTCAGTGACACGTGTCTGTC
CAAAGGGATTCTTTGGAGATACTGTGAATGTACAGAAGCAAAGGTAGTATGCTCAGGTTTTCCG
CATAGGTTTTTTAACTAATCTTGTCTGTAGCTTCGTGTTGCTAGCATTCGCATGGCCAGTTAAG
TACATAATGAAACGTACTTAGAAATCCTTAATGACACCGGTCAGGTCGGTGACATGGCTGCTCC
GTTTAACTATCACAGCTTACCGGTCACAATTTCATTTCTGCTAAGCTTACCGAGAGCAGTATCT
AGTTACATTTAAAGAAGCCACTGACATGTCCAGATTATGGGTTTCCTAAGTGGAATTTAATTAT
GTGCCCATCAATGATGATGACGATTATTTTTTACTTTACCATTATTTGATGGCTAACAAAAGCA
TCTGTCTCTAACACTGCTCTTTTGTGTACTCCTTCGGGGCAGTTGGCTTGGCATGCCAGTCTTA
CACTTCACTTCACTTTGTTGCAATTTAAACATAACAGGAGACTTGAAATACCTTATTTAAAGTC
GGATGCCATACCGTGCATCTGGCATGTGGTTAGTAGGAAGAAATGGCGTGAGAGATGAATGGTG
GGACTCTCGGTGCACTGACGGATGAGAAAGCTCATTCCAAACGGAACTGGCTTCCTAACCAAAA
ACGTGATCGAATGGGGCTGGTGTGTAATTACAAGTGCTGAGGGGAAGGTGAGGAATGAAGCAAC
TTAAAATTAATGAGGGGATGGTGCCTTCCCACACCGTCCCCAAAGCTGCTGTGTGTTTAGTATC
TTGAGGTTTCAAAACTAACCTTTCCTTCCTTTGCCTTTTCTGAGACAGTGGTCCCGTAATTCCA
CTATAAATATCAAGTGAGGGGAATTAATTCCAAATTCTGGTTAATAGTCATATCATCATGTTTG
GCTTAAATCACCATTTTAGACATTACACTGTGCAGTTAGGATTCAACTGTAGAATAAGAGAAGC
CAGAGGTCTCTCTTCAGATAGCCCTGGGCCTGTGGCACAAACGAGAAACACAGTTCTAGTGGAG
AACAGGGCTTACGTAGGAGGGCCTGACATTGAACTGTGCCGTGCGAGCTGTTCCACTCAGCACC
TAGTGTTCTTTACAGAGAAGAGCACTCATTGGTTGCATAAAAGTAGAGATCAAAGAAAAAGAAA
AACTGACACAAGTCAAAATGAGTCAGCCGGTGTGGAGCATGAATTAAGTTCAGTAAAACTGGTG
AGTCCTTGGTGCACCAACTAGGAGACAGAAAACACAAACTCACAGACAAGAAGTGAGTGACGGA
GTGCCGTCGGACACCAGGGTTTCCATCCCACCTCTGCACTGGAAAGAAACAAGTAGGGACAAAG
AGTAGACACACCACCAAACAATTCCTGGGGCTGTTAAAGGACAACCGGAGGGACGGGGGACACA
GATCAGTGGAGAGTGCTTGTCTAACATGTGTCAAGCCCTGGGCTACCCTTCCCATGAAGCCCTG
GGCTACCCCTTCCCTAGAACTGCCTGCAACAGGAATGGCGGTGTGCACCTGGAGTCCCAGCATG
TGGGAGGTAGAGTCAGGATCAGGAATTCAGCATCACTCTTGGCTACACAGTGAGCATGATGCTA
GCATGGGCTATATGAATCCTGTTTCAAAAACCAAAAACATCCCAGTAGAAAACAAAACAGCCCA
AATAACAACAAAATGGACAATTAGAAAAAAATTTCAGTACCTTCCAGGAAAAAAAGGCTCAAAT
GATTTCAGGGGTCTCAGGAAAGAATAATATCCCTTCTCTATAACTCTCTCGTTGACAAAGGAAC
AGGTCCCAACTCATTTGAGCAGTAATACTCTCAAGAATTAACAGCTTTGGAACACTGTCTTTAT
GTGCTAATGCCCCTGGCTGAAGGCATTCTTACGTGAAATACAGGAACAAAGAAATAGACAGCTG
GATGTTGCCTCCCATTTCCACAGATTTTCCTTCTATTCAGGACACCCTTTACTCTCTAGGTCTG
TCCATCACACTGAAACCATCACATTGCAAGCTATCTCAAGACTTTTTCTGTGTGGTCTGATTGT
GCTCGGTGTCTTAAAAGTTTAAGACACTTCCCCTGTATTCTTCCCCTTGACCAGGAAATACACT
CGCTAAGAGAAACAGGGCATTGGGGACTTGCAGATGTTCTAATTGTGAATGGAGTAGTGGACGC
TGTTACCATGCTATGCAAAACCCAACGTGCCCTTTTTCGGGAAATGGAATTTTCATTTACTGTA
TCAAACCGTCAGTCCAGTTTTTATACTAGTTGGCTCAGATCCTAAGACGACATTATCTATCCTT
TATTTAAAGTATAAATAGTACACAGCTATGTTGTCTATGCACAGAAGAGACTTTGTACCTCAAA
GTACACAGCAGAATAAGTTGTACATTCTGACTGAATCAAAGAGTGGTTCAGCCATGAGGGGATG
CTGATAATGACGACGTCTCCAGTCTGTCATCCTAAAGGAACAGACCTCAGTTCTCACTGCTTGT
CTTTTGTTTTGCACAGACATTCATCAATCATGACTAATGTGAGGGGCAAGTCTTCTGAATATAC
CTTTCATTTTGGACCAAACAATTTGCCATGGCAATAAATAATTATGCATTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_006231883 ⟹ XP_006231945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	36,966,840 - 37,003,318 (+)	NCBI
mRatBN7.2	2	35,233,045 - 35,269,527 (+)	NCBI
Rnor_6.0	2	34,185,938 - 34,221,058 (+)	NCBI
Rnor_5.0	2	53,314,253 - 53,350,728 (+)	NCBI

Sequence:

show sequence

TCCGTGCCCCGCTCCGCCCCTGGGGCGGATCCAGCAAGCCCTGTGGTCCGAGAGCCTAGCGAGC
AGCCGGGTGGGCTGAGGGGGCGGCGGCAGCGTTGGAGCCGGGGAAGTTTGGGAGACGTGGCCCC
ATCTGCGATCCTGAGCACCCCTCAAGCTCCGAGGACCGCGGGGGCAGGCGGACCCGCTTCCCGA
CGCCCCCGGGCCCGCAGCCGTCATCTCGTGCTCTCTTAGCTGGAGGTATTTAGGCATCTAAAAT
GTCATCTGTGAAGCCCCTAGTTTATGCAGTTATTCGTTTCTTGCGGGAACAAAGCCAGATGGAT
GCTTACACTTCTGATGAACAAGAAAGTTTGGAAGTTGCAATCCAGTGTTTGGAGACCGTCTTTA
AGATCAGTCCCGAAGATACACATCTGGCCGTTTCACAGCCTTTGACAGAAATGTTCACCAACTC
CGTCTGTAAGAATGACATACGGCCGCTTTCTAACTCAGTGCCCGAAGATGTGGGAAAGGCCGAC
CAGCTGAAGGATGAAGGCAATAACCACATGAAAGAAGAAAACTACGCGGCCGCGGTGGACTGTT
ACACGCAGGCAATAGAACTGGATCCGAACAATGCCGTTTATTATTGTAACAGGGCGGCCGCTCA
AAGCAAACTAAGTCACTACACAGATGCAATCAAGGACTGTGAGAAAGCCATCGCAATTGATTCA
AAATACAGCAAGGCCTACGGAAGGATGGGGCTAGCTCTCACTGCCATGAATAAGTTTGAAGAGG
CAGTTACAAGCTACCAGAAGGCACTGGATCTTGATCCTGAAAACGACTCCTATAAGTCAAATCT
GAAAATAGCAGAGCAGAAGTTAAGAGAGACAGGAACTGGGTTGACCTTTGACATGGCCAGCTTG
ATAAATAACCCGGCCTTCATCACCATGGCTGCAAGTTTAATGCAGAACCCTCAAGTTCAGCAGC
TGATGTCAGGGATGATGACAAATGCCATCGGAGGACCTGCTGCTGGAGTTGGAGGCCTAACAGA
CCTGTCTAGCCTTATCCAAGCGGGGCAGCAGTTTGCACAGCAGATACAGCAACAGAATCCTGAA
CTCATAGAGCAGCTGAGAAATCACATCCGGAGCAGATCCTTCAGCAGCAGCACTGAGGAACACT
CCTGACTTGACCAGGACCCTCGCCCCAGTACAAACATCCCGACATGTACACTTGTAGATAATAG
CCAAAAACAAAGTAACAAAAACCACCCTGTACAATGTCTGAAAATAACGAGGAAAGTCTCCTGT
GTAAACCTGAGAACATACATCTGTTTAGGTAATAGTTTATCACAAGCAGACTTGAACATAATAC
AGACTCCTCTGGAAAGAAATGGTCAGTAACCTTGTTAAGGGCAAATACAGCCTTGGGACAAGGG
TCCATCCATTTTAAAACTTTTATCATCCTATTTGTATATTAGACTTAGCACAGAGTATATTTAT
TGAATAGTAGGGCTATTTATTGGAAAGTTCTTTAGCCACAGGTTTCCCTAGGCAGTGGTTTTGA
GTGGGGTGATGCTGGTTTAGAAGACATGTGCTTGGTAGCACGTCGGGAGAGAAGCGTTGGCATG
TGCTACCGTCAGTGACACGTGTCTGTCCAAAGGGATTCTTTGGAGATACTGTGAATGTACAGAA
GCAAAGGTAGTATGCTCAGGTTTTCCGCATAGGTTTTTTAACTAATCTTGTCTGTAGCTTCGTG
TTGCTAGCATTCGCATGGCCAGTTAAGTACATAATGAAACGTACTTAGAAATCCTTAATGACAC
CGGTCAGGTCGGTGACATGGCTGCTCCGTTTAACTATCACAGCTTACCGGTCACAATTTCATTT
CTGCTAAGCTTACCGAGAGCAGTATCTAGTTACATTTAAAGAAGCCACTGACATGTCCAGATTA
TGGGTTTCCTAAGTGGAATTTAATTATGTGCCCATCAATGATGATGACGATTATTTTTTACTTT
ACCATTATTTGATGGCTAACAAAAGCATCTGTCTCTAACACTGCTCTTTTGTGTACTCCTTCGG
GGCAGTTGGCTTGGCATGCCAGTCTTACACTTCACTTCACTTTGTTGCAATTTAAACATAACAG
GAGACTTGAAATACCTTATTTAAAGTCGGATGCCATACCGTGCATCTGGCATGTGGTTAGTAGG
AAGAAATGGCGTGAGAGATGAATGGTGGGACTCTCGGTGCACTGACGGATGAGAAAGCTCATTC
CAAACGGAACTGGCTTCCTAACCAAAAACGTGATCGAATGGGGCTGGTGTGTAATTACAAGTGC
TGAGGGGAAGGTGAGGAATGAAGCAACTTAAAATTAATGAGGGGATGGTGCCTTCCCACACCGT
CCCCAAAGCTGCTGTGTGTTTAGTATCTTGAGGTTTCAAAACTAACCTTTCCTTCCTTTGCCTT
TTCTGAGACAGTGGTCCCGTAATTCCACTATAAATATCAAGTGAGGGGAATTAATTCCAAATTC
TGGTTAATAGTCATATCATCATGTTTGGCTTAAATCACCATTTTAGACATTACACTGTGCAGTT
AGGATTCAACTGTAGAATAAGAGAAGCCAGAGGTCTCTCTTCAGATAGCCCTGGGCCTGTGGCA
CAAACGAGAAACACAGTTCTAGTGGAGAACAGGGCTTACGTAGGAGGGCCTGACATTGAACTGT
GCCGTGCGAGCTGTTCCACTCAGCACCTAGTGTTCTTTACAGAGAAGAGCACTCATTGGTTGCA
TAAAAGTAGAGATCAAAGAAAAAGAAAAACTGACACAAGTCAAAATGAGTCAGCCGGTGTGGAG
CATGAATTAAGTTCAGTAAAACTGGTGAGTCCTTGGTGCACCAACTAGGAGACAGAAAA

hide sequence

RefSeq Acc Id:

XM_063281504 ⟹ XP_063137574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	36,966,842 - 37,003,318 (+)	NCBI

RefSeq Acc Id:

XM_063281505 ⟹ XP_063137575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	36,966,844 - 37,003,318 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_853660	(Get FASTA)	NCBI Sequence Viewer
	XP_006231944	(Get FASTA)	NCBI Sequence Viewer
	XP_006231945	(Get FASTA)	NCBI Sequence Viewer
	XP_063137574	(Get FASTA)	NCBI Sequence Viewer
	XP_063137575	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP29458	(Get FASTA)	NCBI Sequence Viewer
	EDM10256	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016129
	ENSRNOP00000016129.2
GenBank Protein	Q80W98	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_853660 ⟸ NM_181629

- UniProtKB:

Q80W98 (UniProtKB/Swiss-Prot), A6I5E8 (UniProtKB/TrEMBL), A0A8I6GA86 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSVKPLVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTN
SVCKNDIRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAA
QSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSN
LKIAEQKLREVSSPTGTGLTFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPAAGV
GGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIRSRSFSSSTEEHS

hide sequence

RefSeq Acc Id:	XP_006231944 ⟸ XM_006231882
- Peptide Label:	isoform X1
- UniProtKB:	Q80W98 (UniProtKB/Swiss-Prot), A6I5E8 (UniProtKB/TrEMBL), A0A8I6GA86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSVKPLVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTN SVCKNDIRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAA QSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSN LKIAEQKLREVSSPTGTGLTFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPAAGV GGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIRSRSFSSSTEEHS hide sequence

RefSeq Acc Id:	XP_006231945 ⟸ XM_006231883
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GA86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSVKPLVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTN SVCKNDIRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAA QSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSN LKIAEQKLRETGTGLTFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLT DLSSLIQAGQQFAQQIQQQNPELIEQLRNHIRSRSFSSSTEEHS hide sequence

Ensembl Acc Id:

ENSRNOP00000016129 ⟸ ENSRNOT00000016129

Ensembl Acc Id:

ENSRNOP00000083035 ⟸ ENSRNOT00000105998

RefSeq Acc Id:	XP_063137574 ⟸ XM_063281504
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GA86 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137575 ⟸ XM_063281505
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GA86 (UniProtKB/TrEMBL)

Protein Domains

SGTA homodimerisation

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80W98-F1-model_v2	AlphaFold	Q80W98	1-304	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727976	AgrOrtholog
BioCyc Gene	G2FUF-54557	BioCyc
Ensembl Genes	ENSRNOG00000011937	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016129	ENTREZGENE
	ENSRNOT00000016129.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
	Immunoglobulin FC, subunit C	UniProtKB/Swiss-Prot
InterPro	SGT	UniProtKB/Swiss-Prot
	SGTA_dimer	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
	TPR_repeat	UniProtKB/Swiss-Prot
KEGG Report	rno:294708	UniProtKB/Swiss-Prot
NCBI Gene	294708	ENTREZGENE
PANTHER	LD24721P	UniProtKB/Swiss-Prot
	SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN BETA	UniProtKB/Swiss-Prot
Pfam	SGTA_dimer	UniProtKB/Swiss-Prot
	TPR_1	UniProtKB/Swiss-Prot
	TPR_11	UniProtKB/Swiss-Prot
PhenoGen	Sgtb	PhenoGen
PROSITE	TPR	UniProtKB/Swiss-Prot
	TPR_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011937	RatGTEx
SMART	TPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A8I6GA86	ENTREZGENE, UniProtKB/TrEMBL
	A6I5E8	ENTREZGENE, UniProtKB/TrEMBL
	Q80W98	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-18	Sgtb	small glutamine rich tetratricopeptide repeat co-chaperone beta	Sgtb	small glutamine rich tetratricopeptide repeat containing beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Sgtb	small glutamine rich tetratricopeptide repeat containing beta	Sgtb	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Sgtb	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta		small glutamine rich protein with tetratricopeptide repeats 2	Name updated	1299863	APPROVED
2004-09-10	Sgtb	small glutamine rich protein with tetratricopeptide repeats 2	Sgt2		Symbol and Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed almost exclusively in brain	1299618
gene_physical_interaction	binds to heat shock cognate protein of 70 kDa (Hsc70), cysteine string protein, and oligomerize regardless of isoform	1299618

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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