Sgms1 (sphingomyelin synthase 1) - Rat Genome Database

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Gene: Sgms1 (sphingomyelin synthase 1) Rattus norvegicus
Analyze
Symbol: Sgms1
Name: sphingomyelin synthase 1
RGD ID: 727912
Description: Predicted to enable ceramide cholinephosphotransferase activity; ceramide phosphoethanolamine synthase activity; and sphingomyelin synthase activity. Involved in cellular response to lipopolysaccharide; cellular response to tumor necrosis factor; and positive regulation of gene expression. Predicted to be located in Golgi trans cisterna. Predicted to be active in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Used to study pulmonary edema. Biomarker of pulmonary edema. Orthologous to human SGMS1 (sphingomyelin synthase 1); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC93062; Mob; mob-1; phosphatidylcholine:ceramide cholinephosphotransferase 1; Tmem23; transmembrane protein 23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,409,991 - 239,681,195 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1239,409,991 - 239,505,774 (-)EnsemblGRCr8
mRatBN7.21229,996,673 - 230,259,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1238,362,330 - 238,621,023 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,292,015 - 245,550,709 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,127,826 - 238,388,826 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,692,448 - 250,951,685 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,691,370 - 250,951,697 (-)Ensemblrn6Rnor6.0
Rnor_5.01257,923,300 - 258,182,214 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,133,441 - 236,396,631 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1227,118,516 - 227,377,318 (-)NCBICelera
RGSC_v3.11236,319,654 - 236,381,276 (-)NCBI
Cytogenetic Map1q52NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
pulmonary edema  (IDA,IEP,IMP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium silicate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP,ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
heptachlor  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
leflunomide  (EXP,ISO)
lithocholic acid  (ISO)
melphalan  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
tetracycline  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. MOB-1 and TNF-alpha interact to induce microvascular lung injury. Rabinovici R, etal., Shock 2002 Sep;18(3):261-4.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14685263   PMID:14976195   PMID:15489334   PMID:16226406   PMID:19946888   PMID:21980337   PMID:25605874   PMID:26274505   PMID:29294205  


Genomics

Comparative Map Data
Sgms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,409,991 - 239,681,195 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1239,409,991 - 239,505,774 (-)EnsemblGRCr8
mRatBN7.21229,996,673 - 230,259,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1238,362,330 - 238,621,023 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,292,015 - 245,550,709 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,127,826 - 238,388,826 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,692,448 - 250,951,685 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,691,370 - 250,951,697 (-)Ensemblrn6Rnor6.0
Rnor_5.01257,923,300 - 258,182,214 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,133,441 - 236,396,631 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1227,118,516 - 227,377,318 (-)NCBICelera
RGSC_v3.11236,319,654 - 236,381,276 (-)NCBI
Cytogenetic Map1q52NCBI
SGMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381050,305,600 - 50,625,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1050,305,586 - 50,625,187 (-)Ensemblhg38GRCh38
GRCh371052,065,360 - 52,383,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361051,735,351 - 52,053,743 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341051,735,351 - 52,053,743NCBI
Celera1075,221,199 - 75,539,540 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1046,064,748 - 46,384,168 (-)NCBIHuRef
CHM1_11052,347,208 - 52,665,557 (-)NCBICHM1_1
T2T-CHM13v2.01051,153,786 - 51,472,591 (-)NCBIT2T-CHM13v2.0
Sgms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,100,127 - 32,367,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,100,127 - 32,367,114 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381932,122,727 - 32,389,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,122,727 - 32,389,714 (-)Ensemblmm10GRCm38
MGSCv371932,197,217 - 32,462,944 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361932,188,727 - 32,314,032 (-)NCBIMGSCv36mm8
Celera1932,909,133 - 33,168,704 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1926.68NCBI
Sgms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,784,751 - 5,822,488 (+)Ensembl
ChiLan1.0NW_0049554255,507,905 - 5,819,357 (+)NCBIChiLan1.0ChiLan1.0
SGMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2862,619,746 - 62,933,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11062,625,068 - 62,939,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01046,960,159 - 47,273,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11049,076,976 - 49,392,937 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1049,076,984 - 49,116,154 (-)EnsemblpanPan2panpan1.1
SGMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,243,388 - 37,472,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,244,900 - 37,348,802 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2637,128,050 - 37,357,239 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02638,775,863 - 39,005,440 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2638,776,907 - 39,026,132 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12636,683,424 - 36,912,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,264,203 - 36,493,530 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02637,503,839 - 37,732,954 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sgms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721376,808,901 - 77,088,722 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367351,943,352 - 1,984,141 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367351,702,754 - 1,984,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,147,272 - 99,185,082 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11499,147,266 - 99,458,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214107,987,111 - 108,238,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1980,524,115 - 80,646,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl980,524,055 - 80,562,945 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604841,180,929 - 41,498,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479113,097,808 - 13,146,544 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479113,096,268 - 13,490,220 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sgms1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1232,167,579 - 32,433,351 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sgms1
1857 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:76
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000054761
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367243666627Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1223964326248681945Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238398865255849249Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat

Markers in Region
RH130972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,259,662 - 230,259,812 (+)MAPPERmRatBN7.2
Rnor_6.01250,951,757 - 250,951,906NCBIRnor6.0
Rnor_5.01258,182,286 - 258,182,435UniSTSRnor5.0
RGSC_v3.41236,396,703 - 236,396,852UniSTSRGSC3.4
Celera1227,377,390 - 227,377,539UniSTS
RH 3.4 Map11616.42UniSTS
Cytogenetic Map1q52UniSTS
RH144312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,112,036 - 230,112,170 (+)MAPPERmRatBN7.2
Rnor_6.01250,804,285 - 250,804,418NCBIRnor6.0
Rnor_5.01258,035,048 - 258,035,181UniSTSRnor5.0
RGSC_v3.41236,249,020 - 236,249,153UniSTSRGSC3.4
Celera1227,229,997 - 227,230,130UniSTS
Cytogenetic Map1q52UniSTS
BE106238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21230,032,447 - 230,032,623 (+)MAPPERmRatBN7.2
Rnor_6.01250,725,102 - 250,725,277NCBIRnor6.0
Rnor_5.01257,955,954 - 257,956,129UniSTSRnor5.0
RGSC_v3.41236,168,282 - 236,168,457UniSTSRGSC3.4
Celera1227,150,244 - 227,150,419UniSTS
RH 3.4 Map11716.2UniSTS
Cytogenetic Map1q52UniSTS
BF055346  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21229,997,886 - 229,997,993 (+)MAPPERmRatBN7.2
Rnor_6.01250,692,217 - 250,692,323NCBIRnor6.0
Rnor_5.01257,923,069 - 257,923,175UniSTSRnor5.0
RGSC_v3.41236,133,210 - 236,133,316UniSTSRGSC3.4
Celera1227,118,285 - 227,118,391UniSTS
Cytogenetic Map1q52UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_181386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF461433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY280961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000054761   ⟹   ENSRNOP00000051643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,409,991 - 239,505,774 (-)Ensembl
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)Ensembl
Rnor_6.0 Ensembl1250,692,449 - 250,951,697 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079227   ⟹   ENSRNOP00000070714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1230,032,127 - 230,119,931 (-)Ensembl
Rnor_6.0 Ensembl1250,692,135 - 250,774,105 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079942   ⟹   ENSRNOP00000075395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,444,038 - 239,447,743 (-)Ensembl
mRatBN7.2 Ensembl1229,998,124 - 230,034,425 (-)Ensembl
Rnor_6.0 Ensembl1250,692,452 - 250,727,079 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087588   ⟹   ENSRNOP00000075286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1250,691,370 - 250,727,218 (-)Ensembl
RefSeq Acc Id: NM_181386   ⟹   NP_852051
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,672,893 (-)NCBI
mRatBN7.21229,996,673 - 230,259,591 (-)NCBI
Rnor_6.01250,692,448 - 250,951,685 (-)NCBI
Rnor_5.01257,923,300 - 258,182,214 (-)NCBI
RGSC_v3.41236,133,441 - 236,396,631 (-)RGD
Celera1227,118,516 - 227,377,318 (-)RGD
Sequence:
RefSeq Acc Id: XM_039080981   ⟹   XP_038936909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080983   ⟹   XP_038936911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,670,946 (-)NCBI
mRatBN7.21229,996,673 - 230,257,746 (-)NCBI
RefSeq Acc Id: XM_039080988   ⟹   XP_038936916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
mRatBN7.21229,996,673 - 230,130,002 (-)NCBI
RefSeq Acc Id: XM_039080994   ⟹   XP_038936922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080997   ⟹   XP_038936925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
mRatBN7.21229,996,673 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039080998   ⟹   XP_038936926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,533,070 (-)NCBI
mRatBN7.21229,996,673 - 230,119,752 (-)NCBI
RefSeq Acc Id: XM_039081001   ⟹   XP_038936929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,520,055 (-)NCBI
mRatBN7.21229,996,673 - 230,106,741 (-)NCBI
RefSeq Acc Id: XM_039081009   ⟹   XP_038936937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,485,556 (-)NCBI
mRatBN7.21229,996,673 - 230,072,230 (-)NCBI
RefSeq Acc Id: XM_039081014   ⟹   XP_038936942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,671,409 (-)NCBI
mRatBN7.21230,011,322 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_039081018   ⟹   XP_038936946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,435,534 - 239,671,409 (-)NCBI
mRatBN7.21230,022,238 - 230,258,099 (-)NCBI
RefSeq Acc Id: XM_063265725   ⟹   XP_063121795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265730   ⟹   XP_063121800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265732   ⟹   XP_063121802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265737   ⟹   XP_063121807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265740   ⟹   XP_063121810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265743   ⟹   XP_063121813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265749   ⟹   XP_063121819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,540,936 (-)NCBI
RefSeq Acc Id: XM_063265754   ⟹   XP_063121824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265759   ⟹   XP_063121829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265764   ⟹   XP_063121834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,056 (-)NCBI
RefSeq Acc Id: XM_063265767   ⟹   XP_063121837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,081 (-)NCBI
RefSeq Acc Id: XM_063265770   ⟹   XP_063121840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265776   ⟹   XP_063121846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265777   ⟹   XP_063121847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265781   ⟹   XP_063121851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265786   ⟹   XP_063121856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,540,942 (-)NCBI
RefSeq Acc Id: XM_063265790   ⟹   XP_063121860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265793   ⟹   XP_063121863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,671,069 (-)NCBI
RefSeq Acc Id: XM_063265797   ⟹   XP_063121867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,409,991 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265806   ⟹   XP_063121876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,412,554 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265816   ⟹   XP_063121886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265819   ⟹   XP_063121889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265822   ⟹   XP_063121892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,681,195 (-)NCBI
RefSeq Acc Id: XM_063265823   ⟹   XP_063121893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,543,465 (-)NCBI
RefSeq Acc Id: XM_063265831   ⟹   XP_063121901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,425,689 - 239,540,974 (-)NCBI
RefSeq Acc Id: XM_063265836   ⟹   XP_063121906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,416,718 - 239,671,409 (-)NCBI
RefSeq Acc Id: XM_063265838   ⟹   XP_063121908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,416,718 - 239,681,195 (-)NCBI
RefSeq Acc Id: XR_005487755
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,435,590 - 239,671,409 (-)NCBI
mRatBN7.21230,022,366 - 230,258,099 (-)NCBI
RefSeq Acc Id: XR_010053998
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,671,409 (-)NCBI
RefSeq Acc Id: XR_010053999
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,543,465 (-)NCBI
RefSeq Acc Id: XR_010054000
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,671,409 (-)NCBI
RefSeq Acc Id: XR_010054001
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,438,459 - 239,543,465 (-)NCBI
Protein Sequences
Protein RefSeqs NP_852051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936909 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936937 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936946 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121795 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121800 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121802 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121807 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121810 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121813 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121819 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121824 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121829 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121834 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121837 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121840 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121846 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121851 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121856 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121860 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121863 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121867 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121876 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121886 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121889 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121893 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121901 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121906 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121908 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78690 (Get FASTA)   NCBI Sequence Viewer  
  AAH81693 (Get FASTA)   NCBI Sequence Viewer  
  AAL67569 (Get FASTA)   NCBI Sequence Viewer  
  AAP37281 (Get FASTA)   NCBI Sequence Viewer  
  EDM13135 (Get FASTA)   NCBI Sequence Viewer  
  EDM13136 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051643
  ENSRNOP00000051643.1
GenBank Protein Q7TSX5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_852051   ⟸   NM_181386
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070714   ⟸   ENSRNOT00000079227
Ensembl Acc Id: ENSRNOP00000075286   ⟸   ENSRNOT00000087588
Ensembl Acc Id: ENSRNOP00000075395   ⟸   ENSRNOT00000079942
Ensembl Acc Id: ENSRNOP00000051643   ⟸   ENSRNOT00000054761
RefSeq Acc Id: XP_038936925   ⟸   XM_039080997
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936909   ⟸   XM_039080981
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936922   ⟸   XM_039080994
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936911   ⟸   XM_039080983
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936916   ⟸   XM_039080988
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936926   ⟸   XM_039080998
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936929   ⟸   XM_039081001
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936937   ⟸   XM_039081009
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936942   ⟸   XM_039081014
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936946   ⟸   XM_039081018
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121867   ⟸   XM_063265797
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121795   ⟸   XM_063265725
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121860   ⟸   XM_063265790
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121824   ⟸   XM_063265754
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121840   ⟸   XM_063265770
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121813   ⟸   XM_063265743
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121807   ⟸   XM_063265737
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121800   ⟸   XM_063265730
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121802   ⟸   XM_063265732
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121829   ⟸   XM_063265759
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121837   ⟸   XM_063265767
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121863   ⟸   XM_063265793
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121834   ⟸   XM_063265764
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121851   ⟸   XM_063265781
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121846   ⟸   XM_063265776
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121847   ⟸   XM_063265777
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121810   ⟸   XM_063265740
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121856   ⟸   XM_063265786
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121819   ⟸   XM_063265749
- Peptide Label: isoform X1
- UniProtKB: Q7TSX5 (UniProtKB/Swiss-Prot),   A6I104 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121876   ⟸   XM_063265806
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121908   ⟸   XM_063265838
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121906   ⟸   XM_063265836
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121892   ⟸   XM_063265822
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121886   ⟸   XM_063265816
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121889   ⟸   XM_063265819
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121893   ⟸   XM_063265823
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121901   ⟸   XM_063265831
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYM5 (UniProtKB/TrEMBL),   A6I105 (UniProtKB/TrEMBL)
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TSX5-F1-model_v2 AlphaFold Q7TSX5 1-419 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690857
Promoter ID:EPDNEW_R1382
Type:multiple initiation site
Name:Sgms1_1
Description:sphingomyelin synthase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01250,951,718 - 250,951,778EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727912 AgrOrtholog
BioCyc Gene G2FUF-55924 BioCyc
Ensembl Genes ENSRNOG00000012536 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054761 ENTREZGENE
  ENSRNOT00000054761.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7113038 IMAGE-MGC_LOAD
  IMAGE:7132545 IMAGE-MGC_LOAD
InterPro SAM UniProtKB/Swiss-Prot
  SAM_type UniProtKB/Swiss-Prot
  Sphingomyelin_synth-like UniProtKB/Swiss-Prot
  Sphingomyelin_synth-like_dom UniProtKB/Swiss-Prot
KEGG Report rno:353229 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93062 IMAGE-MGC_LOAD
  MGC:93063 IMAGE-MGC_LOAD
NCBI Gene 353229 ENTREZGENE
PANTHER PHOSPHATIDYLCHOLINE:CERAMIDE CHOLINEPHOSPHOTRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR21290 UniProtKB/Swiss-Prot
Pfam PAP2_C UniProtKB/Swiss-Prot
PhenoGen Sgms1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012536 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/Swiss-Prot
UniProt A0A0G2JYM5 ENTREZGENE
  A6I104 ENTREZGENE, UniProtKB/TrEMBL
  A6I105 ENTREZGENE, UniProtKB/TrEMBL
  Q6AZ82_RAT UniProtKB/TrEMBL
  Q7TSX5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Sgms1  sphingomyelin synthase 1  Tmem23  transmembrane protein 23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Tmem23  transmembrane protein 23  Mob  mob protein  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process interacts with TNF-alpha to promote lung inflammation 1302423