Mustn1 (musculoskeletal, embryonic nuclear protein 1) - Rat Genome Database

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Gene: Mustn1 (musculoskeletal, embryonic nuclear protein 1) Rattus norvegicus
Analyze
Symbol: Mustn1
Name: musculoskeletal, embryonic nuclear protein 1
RGD ID: 727804
Description: Involved in embryonic limb morphogenesis and tissue regeneration. Located in nucleoplasm. Orthologous to human MUSTN1 (musculoskeletal, embryonic nuclear protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fracture callus protein MUSTANG; musculoskeletal embryonic nuclear protein 1; musculoskeletal temporally activated novel gene protein; Mustang
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,079,355 - 6,081,608 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,079,277 - 6,081,586 (+)EnsemblGRCr8
mRatBN7.2166,072,908 - 6,075,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,072,833 - 6,075,161 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,084,491 - 6,086,741 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,229,947 - 7,232,197 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,091,596 - 6,093,847 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,962,737 - 6,964,987 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,962,722 - 6,964,989 (+)Ensemblrn6Rnor6.0
Rnor_5.0166,889,473 - 6,891,723 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,311,978 - 6,314,228 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,114,915 - 9,117,165 (-)NCBICelera
RGSC_v3.1166,311,975 - 6,314,226 (+)NCBI
Cytogenetic Map16p16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
extracellular region  (IEA)
nucleoplasm  (IDA)
nucleus  (IDA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of Mustang, a novel nuclear protein expressed during skeletal development and regeneration. Lombardo F, etal., FASEB J 2004 Jan;18(1):52-61.
2. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19410023  


Genomics

Comparative Map Data
Mustn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,079,355 - 6,081,608 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,079,277 - 6,081,586 (+)EnsemblGRCr8
mRatBN7.2166,072,908 - 6,075,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,072,833 - 6,075,161 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,084,491 - 6,086,741 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,229,947 - 7,232,197 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,091,596 - 6,093,847 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,962,737 - 6,964,987 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,962,722 - 6,964,989 (+)Ensemblrn6Rnor6.0
Rnor_5.0166,889,473 - 6,891,723 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,311,978 - 6,314,228 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,114,915 - 9,117,165 (-)NCBICelera
RGSC_v3.1166,311,975 - 6,314,226 (+)NCBI
Cytogenetic Map16p16NCBI
MUSTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,833,121 - 52,835,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,833,114 - 52,835,019 (-)Ensemblhg38GRCh38
GRCh37352,867,137 - 52,869,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,842,177 - 52,844,260 (-)NCBIBuild 36Build 36hg18NCBI36
Celera352,845,956 - 52,848,039 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,928,926 - 52,931,042 (-)NCBIHuRef
CHM1_1352,819,330 - 52,821,434 (-)NCBICHM1_1
T2T-CHM13v2.0352,866,132 - 52,868,037 (-)NCBIT2T-CHM13v2.0
Mustn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,601,214 - 30,603,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,601,157 - 30,603,567 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381430,879,257 - 30,881,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,879,200 - 30,881,610 (+)Ensemblmm10GRCm38
MGSCv371431,692,443 - 31,694,796 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361429,708,549 - 29,710,617 (+)NCBIMGSCv36mm8
Celera1427,136,627 - 27,138,980 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Mustn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,790,090 - 2,793,880 (-)Ensembl
ChiLan1.0NW_0049554302,790,090 - 2,793,880 (-)NCBIChiLan1.0ChiLan1.0
MUSTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,827,935 - 52,830,946 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,832,886 - 52,835,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,774,843 - 52,778,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1354,000,547 - 54,004,099 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl354,000,547 - 54,004,099 (-)EnsemblpanPan2panpan1.1
MUSTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2036,976,074 - 36,981,907 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02037,319,303 - 37,350,672 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,344,915 - 37,352,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.02037,116,837 - 37,122,681 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,394,372 - 37,400,213 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mustn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,453,686 - 170,455,950 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,592,253 - 3,594,329 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,592,259 - 3,594,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MUSTN1
(Sus scrofa - pig)		 No map positions available.
MUSTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,215,968 - 14,219,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041152,678,397 - 152,684,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mustn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,390,682 - 4,395,494 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248224,388,562 - 4,395,494 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mustn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1136,581,756 - 6,584,956 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mustn1
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:53
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000023330
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161177108157035Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
RH137189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,074,956 - 6,075,136 (+)MAPPERmRatBN7.2
Rnor_6.0166,964,786 - 6,964,965NCBIRnor6.0
Rnor_5.0166,891,522 - 6,891,701UniSTSRnor5.0
RGSC_v3.4166,314,027 - 6,314,206UniSTSRGSC3.4
Celera169,114,937 - 9,115,116UniSTS
RH 3.4 Map1646.3UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 84 59 6 348 184 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023330   ⟹   ENSRNOP00000023330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,079,277 - 6,081,586 (+)Ensembl
mRatBN7.2 Ensembl166,072,833 - 6,075,161 (+)Ensembl
Rnor_6.0 Ensembl166,962,722 - 6,964,989 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115791   ⟹   ENSRNOP00000091781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,072,833 - 6,075,161 (+)Ensembl
RefSeq Acc Id: NM_181368   ⟹   NP_852033
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,079,355 - 6,081,608 (+)NCBI
mRatBN7.2166,072,908 - 6,075,161 (+)NCBI
Rnor_6.0166,962,737 - 6,964,987 (+)NCBI
Rnor_5.0166,889,473 - 6,891,723 (+)NCBI
RGSC_v3.4166,311,978 - 6,314,228 (+)RGD
Celera169,114,915 - 9,117,165 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_852033 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58571 (Get FASTA)   NCBI Sequence Viewer  
  AAP12535 (Get FASTA)   NCBI Sequence Viewer  
  EDL88980 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023330
  ENSRNOP00000023330.4
GenBank Protein Q80XX4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_852033   ⟸   NM_181368
- UniProtKB: Q80XX4 (UniProtKB/Swiss-Prot),   B0BMU8 (UniProtKB/TrEMBL),   A0A8I6AU05 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023330   ⟸   ENSRNOT00000023330
Ensembl Acc Id: ENSRNOP00000091781   ⟸   ENSRNOT00000115791

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80XX4-F1-model_v2 AlphaFold Q80XX4 1-82 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699913
Promoter ID:EPDNEW_R10437
Type:initiation region
Name:Mustn1_2
Description:musculoskeletal, embryonic nuclear protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10438  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0166,962,638 - 6,962,698EPDNEW
RGD ID:13699914
Promoter ID:EPDNEW_R10438
Type:single initiation site
Name:Mustn1_1
Description:musculoskeletal, embryonic nuclear protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10437  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0166,962,928 - 6,962,988EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727804 AgrOrtholog
BioCyc Gene G2FUF-12177 BioCyc
Ensembl Genes ENSRNOG00000017369 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023330 ENTREZGENE
  ENSRNOT00000023330.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:9092791 IMAGE-MGC_LOAD
InterPro MUSTN1 UniProtKB/Swiss-Prot
KEGG Report rno:290553 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187300 IMAGE-MGC_LOAD
NCBI Gene 290553 ENTREZGENE
Pfam Mustang UniProtKB/Swiss-Prot
PhenoGen Mustn1 PhenoGen
RatGTEx ENSRNOG00000017369 RatGTEx
UniProt A0A8I6AU05 ENTREZGENE
  A6KG23_RAT UniProtKB/TrEMBL
  B0BMU8 ENTREZGENE, UniProtKB/TrEMBL
  MSTN1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Mustn1  musculoskeletal, embryonic nuclear protein 1  Mustang  fracture callus protein MUSTANG  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expression appears to be limited to tissues in the musculoskeletal system in adults, particularly in differentiating periosteal osteogenic cells, proliferating chondrocytes, and osteoblasts of the fracture callus 1302424
gene_expression expression during embryogenesis is highest in mesenchymal condensations of limbs, vertebral perichondrium, and mesenchymal cells of the intervertebral discs 1302424
gene_homology comparison with sequences in EST databases showed homologies with mouse, human and cow, but not with any nonmammalian species tested 1302424