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Gene: B4galt6 (beta-1,4-galactosyltransferase 6) Rattus norvegicus

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Symbol:

B4galt6

Name:

beta-1,4-galactosyltransferase 6

RGD ID:

71046

Description:

Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Involved in glycosphingolipid biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

b4Gal-T6; beta-1,4-GalTase 6; beta4Gal-T6; glucosylceramide beta-1,4-galactosyltransferase; LacCer synthase; Lactosylceramide Synthase; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 6; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6; UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	12,233,350 - 12,290,204 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	12,233,351 - 12,290,204 (-)	Ensembl				GRCr8
mRatBN7.2	18	11,958,382 - 12,015,247 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	11,958,390 - 12,015,247 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	12,154,136 - 12,212,289 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	12,941,785 - 12,999,961 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	12,213,423 - 12,271,600 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,462,913 - 15,525,584 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,462,913 - 15,525,579 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	15,241,489 - 15,300,184 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	12,421,062 - 12,478,276 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	11,965,996 - 12,023,192 (-)	NCBI		Celera
RGSC_v3.1	18	12,447,708 - 12,504,922 (-)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Autoimmune Encephalomyelitis (ISO)

multiple sclerosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bicalutamide (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dexamethasone (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dimethyl sulfoxide (ISO)

diuron (EXP)

folic acid (ISO)

furan (EXP)

genistein (EXP)

gentamycin (EXP)

glyphosate (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

iron dichloride (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP,ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

progesterone (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

temozolomide (ISO)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

central nervous system myelination (IEA,ISO,ISS)

central nervous system neuron axonogenesis (IEA,ISO,ISS)

ganglioside biosynthetic process (IEA,ISO,ISS)

glycoprotein biosynthetic process (IEA)

glycosphingolipid biosynthetic process (IBA,IDA)

lactosylceramide biosynthetic process (IEA,ISO)

lipid metabolic process (IEA)

neuron maturation (IEA,ISO,ISS)

sphingolipid metabolic process (IEA)

Cellular Component

Golgi apparatus (IBA,IEA)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA)

Molecular Function

galactosyltransferase activity (IEA,ISO)

glycosyltransferase activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fabry disease pathway (ISO)

Gaucher's disease pathway (ISO)

Krabbe disease pathway (ISO)

metachromatic leukodystrophy pathway (ISO)

sphingolipid metabolic pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
4.	Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation.	Mayo L, etal., Nat Med. 2014 Oct;20(10):1147-56. doi: 10.1038/nm.3681. Epub 2014 Sep 14.
5.	Gene Data Set	MGD Curation, June 12, 2002
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain.	Nomura T, etal., J Biol Chem 1998 May 29;273(22):13570-7.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
11.	GOA pipeline	RGD automated data pipeline
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10320813	PMID:23882130	PMID:24498430	PMID:30114188

Genomics

Comparative Map Data

B4galt6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	12,233,350 - 12,290,204 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	12,233,351 - 12,290,204 (-)	Ensembl				GRCr8
mRatBN7.2	18	11,958,382 - 12,015,247 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	11,958,390 - 12,015,247 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	12,154,136 - 12,212,289 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	12,941,785 - 12,999,961 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	12,213,423 - 12,271,600 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,462,913 - 15,525,584 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,462,913 - 15,525,579 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	15,241,489 - 15,300,184 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	12,421,062 - 12,478,276 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	11,965,996 - 12,023,192 (-)	NCBI		Celera
RGSC_v3.1	18	12,447,708 - 12,504,922 (-)	NCBI
Cytogenetic Map	18	p12	NCBI

B4GALT6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	31,622,246 - 31,724,641 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	31,621,911 - 31,685,836 (-)	Ensembl			hg38	GRCh38
GRCh37	18	29,202,209 - 29,266,006 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	27,457,131 - 27,518,626 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	18	27,457,130 - 27,518,626	NCBI
Celera	18	26,009,322 - 26,071,820 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI
HuRef	18	26,059,097 - 26,121,851 (-)	NCBI		HuRef
CHM1_1	18	29,129,480 - 29,191,957 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	31,812,761 - 31,915,198 (-)	NCBI		T2T-CHM13v2.0

B4galt6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	20,817,656 - 20,879,461 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	20,817,656 - 20,879,461 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	20,684,599 - 20,746,404 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	20,684,599 - 20,746,404 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	20,843,100 - 20,904,905 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	20,829,013 - 20,889,414 (-)	NCBI		MGSCv36	mm8
MGSCv36	X	144,134,077 - 144,155,020 (+)	NCBI		MGSCv36	mm8
Celera	18	21,179,965 - 21,241,709 (-)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	11.48	NCBI

B4galt6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	18,942,872 - 19,024,132 (-)	Ensembl
ChiLan1.0	NW_004955402	18,945,013 - 19,024,132 (-)	NCBI	ChiLan1.0	ChiLan1.0

B4GALT6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	49,014,773 - 49,080,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	34,707,369 - 34,773,554 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	24,840,106 - 24,906,309 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	28,438,302 - 28,500,940 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	28,438,302 - 28,500,946 (-)	Ensembl			panPan2	panpan1.1

B4GALT6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	57,849,872 - 57,917,289 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	57,849,884 - 57,914,360 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	57,286,934 - 57,354,734 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	57,834,554 - 57,902,751 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	57,834,634 - 57,902,832 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	57,511,630 - 57,579,326 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	57,537,715 - 57,605,342 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	57,826,294 - 57,894,519 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

B4galt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	53,534,066 - 53,591,561 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936682	1,535,586 - 1,593,827 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936682	1,535,617 - 1,590,723 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GALT6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	115,524,636 - 115,593,270 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	115,525,515 - 115,593,265 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	108,153,093 - 108,219,609 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GALT6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	49,037,348 - 49,101,769 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	49,037,225 - 49,102,502 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	23,687,018 - 23,751,301 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4galt6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	1,160,120 - 1,240,016 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624770	1,119,202 - 1,239,127 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

B4galt6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	22,928,496 - 22,987,922 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in B4galt6
237 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	617
Count of miRNA genes:	280
Interacting mature miRNAs:	369
Transcripts:	ENSRNOT00000021764
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903356	Bp354	Blood pressure QTL 354	4.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	15642423	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

D18Wox23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	12,233,876 - 12,234,131 (+)	Marker Load Pipeline
mRatBN7.2	18	11,958,910 - 11,959,165 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,524,804 - 15,525,058	NCBI	Rnor6.0
Rnor_5.0	18	15,299,404 - 15,299,658	UniSTS	Rnor5.0
RGSC_v3.4	18	12,421,588 - 12,421,842	UniSTS	RGSC3.4
Celera	18	11,966,522 - 11,966,776	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH129406

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	11,961,846 - 11,962,032 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,521,938 - 15,522,123	NCBI	Rnor6.0
Rnor_5.0	18	15,296,538 - 15,296,723	UniSTS	Rnor5.0
RGSC_v3.4	18	12,424,523 - 12,424,708	UniSTS	RGSC3.4
Celera	18	11,969,457 - 11,969,642	UniSTS
RH 3.4 Map	18	109.7	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH143942

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	12,014,459 - 12,014,579 (-)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,490,537 - 15,490,656	NCBI	Rnor6.0
Rnor_6.0	18	15,463,577 - 15,463,696	NCBI	Rnor6.0
Rnor_5.0	18	15,265,413 - 15,265,532	UniSTS	Rnor5.0
RGSC_v3.4	18	12,477,069 - 12,477,188	UniSTS	RGSC3.4
Celera	18	12,022,405 - 12,022,524	UniSTS
RH 3.4 Map	18	113.8	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF048687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021764 ⟹ ENSRNOP00000021764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	12,233,351 - 12,282,020 (-)	Ensembl
mRatBN7.2 Ensembl	18	11,958,390 - 12,010,197 (-)	Ensembl
Rnor_6.0 Ensembl	18	15,462,913 - 15,525,579 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091557 ⟹ ENSRNOP00000075106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	15,490,717 - 15,521,849 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091696 ⟹ ENSRNOP00000068803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	15,467,870 - 15,524,112 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111678 ⟹ ENSRNOP00000082568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	12,233,351 - 12,290,204 (-)	Ensembl
mRatBN7.2 Ensembl	18	11,958,390 - 12,015,247 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138133 ⟹ ENSRNOP00000104176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	12,233,351 - 12,284,372 (-)	Ensembl

RefSeq Acc Id:

NM_031740 ⟹ NP_113928

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	12,233,351 - 12,290,204 (-)	NCBI
mRatBN7.2	18	11,958,385 - 12,015,247 (-)	NCBI
Rnor_6.0	18	15,462,913 - 15,525,584 (+)	NCBI
Rnor_5.0	18	15,241,489 - 15,300,184 (+)	NCBI
RGSC_v3.4	18	12,421,062 - 12,478,276 (-)	RGD
Celera	18	11,965,996 - 12,023,192 (-)	RGD

Sequence:

show sequence

AGCCTGCAGGGGTCTCGGGGCGCACAGGGCTGCCGGGATTGTCCTCGTGGGTGTCCGCAGTCCG
AGATCGCCGCGTGTCTGTCATCTGTTTCCTTCGTCCTCCGGGCCCCGGCCGCGCGCATCCGCCG
GGTAGTCCGGGGTCCGTGCGGGGGGCGGCGGCGCCTCTCCCTCGGGCCGGGCGGCGGGAATGCG
GTTGCCTTGGCCGGCTGGGCAGCGGGCGCGGCTGCAAACGGAACCCGGGTGCACTCGCCGCTGG
CCGGGACGCCGCCCTGGCCTGCTCTCGGCTCCCGAGGCCGCCCTGCGCTCTGGGGCCCGGCGCG
GAATGAGGTGCAGGCCGCGCACCGCCGACGCCCCCTCCGCGGCCCCCTGGTTCAACGCGGCCGC
CCGCGCCTCGCGTGCCCCAGCGCCCACGTTAGAGCCTCGCACTGGCAGCGCTCGCGGAGGCACA
GGCCTGCAGAGCGCACGCCACTCGGCCCGGGTCCCGATCGCGGGGACTCGCCTCTTGGACACCG
CCCCAGGTGCGGGACCCCGACACGCTGCAAGCGCGCGGGCCGCCTCCGCATCGCAGAGCTCCTC
TAGCCTGGCCCGTGGCTTTGGCCTCCACGGAGCCGGATCTCCCTGCCTCCCTCCACATTTCTCC
GCATCCTTTCAACACCCTTCCCGCTGCTCTACCACCTCCCATTCATTGCATCCATTTCTCCTTC
CCGGCTCGGTTCTTCTTCCCATAACCTCCCCGGCCGGACCCCGCTACCCACCCGGTACATTCAT
GGAAGTTTAGGGCCTGGACCGTGGCTCGGAGTCTGGCCTGAGAGCGCAGCGGAGCTGCTGGTAG
GGCAGAGGAAGATGTCTGCGCTCAAGCGGATGATGCGGGTCTCCAATCGCTCCCTGATCGCCTT
CATCTTCTTCTTCTCCCTCTCCACGTCCTGTCTCTATTTCATCTATGTGGCTCCAGGCATCGCC
AACACATACCTCTTTATGGTACAAGCTAGAGGCATCATGCTGAGAGAAAATGTGAAAACAATTG
GACACATGATCAGGCTGTATACCAATAAAAACACTACGCTCAATGGGACAGATTATCCCGAAGG
CAATAATACAAGTGACTATCTTGTTCAAACAACAACGTATCTTCCGCAGAACTTCACGTATTCA
CCGCACCTCCCCTGTCCAGAGAAGCTGCCTTATATGCGGGGATTCCTCAGTGTCAACGTGAGTG
AAATCAGCTTTGATGAAGTCCATCAGCTCTTCTCCAAGGACTCGGAGATTGAGCCGGGAGGCCA
CTGGAGGCCCCAGGACTGCAAGCCTAGATGGAAGGTGGCAGTTCTCATCCCCTTCCGTAACCGC
CATGAACACCTCCCGATCTTTTTCCTGCACCTGATCCCGATGCTCCAGAAACAGAGGCTGGAAT
TTGCCTTTTATGTCATCGAACAGACCGGCACACAACCGTTCAATCGTGCCATGCTCTTTAACGT
GGGTTTCAAAGAGGCCATGAAGGACAGAGCCTGGGACTGTGTGATCTTCCACGACGTGGATCAT
CTTCCTGAGAACGATCGGAACTATTACGGATGCGGGGAGATGCCGCGGCACTTTGCAGCGAAGC
TGGACAAGTACATGTACATTCTTCCTTATAAGGAGTTCTTTGGTGGGGTGAGTGGCCTGACAGT
GGAGCAATTTAGGAAGATCAATGGCTTTCCCAATGCCTTCTGGGGATGGGGAGGAGAGGATGAC
GACCTTTGGAACAGAGTTCACTACTCTGGATACAATGTAACCCGGCCAGAGGGGGACTTGGGAA
AATATACATCTATTCCCCATCACCATCGAGGGGAAGTACAATTTTTAGGACGGTATAAATTACT
TCGCTATTCTAAGGAGCGTCAGTTCATTGATGGATTGAACAATTTATTATACACACCCAAAATA
CTGGTTGACAGGCTGTATACAAATATATCTGTAAACCTCATGCCGGAGTTAGCTCCAGTTGAAG
ACTATTAAAAAGAAGTCATTCCCGTGGTGGGGTAGACCACAGCACTGAATCATGAACTTGGCTT
GGAATGCACTCACCGTGGAAGTTAGAGATTGGTGTGTATCTCAGTGTCCCAGTCTGTAAAAAGA
ACCAGCAGTCCTTAATGTTTACAGCGTGGGCTCCATCTGTCACACTCCCCACTCTCCTCCCTGC
TGGGAGCACCTCCCATGGCGAGCACTGTCGAGATACAAACCCATTGCTTGGGATTGGAAGTGAA
GAAAACTCCCTACACAGAGAAGATTTTTTTTATACTGAAATCTATAATTTAATTCAAGAGAATG
CTTTTATTTCCGTTCAAACATATTTTGTACATATGTGATGTAAATTAAATATGTTCAAATTGTT
GGAAAATAAGATGTCATAATTTTGCATGTAATTGGTTATGCCTTCATTGGACTTTTATAGACAT
TTTTTTTATTTGCATGGGGGGAAAAAACTGTAAATTTATGTCGCCAGACAAAGGTTAAGCCTTG
TGTGAAATGAAGGGACTGTCAGCGACGGACAAAGATAATACCGTAACTGTTTCGTTGAACTGGT
GTTCAGCTTTAGCCTTCAGCCTCATGGGAAGAGGCACAGTCCTCTGAGGGCTTTGAAGGAAGGA
AGGAAGGACTCGAATAGCTTTTCTTCCTGCCAGGATTACCTGTTTTGTTTGTTTGTTTTTTTCA
CTTGCTTGCAGTCTCATCAGATCTTGCCAAGTCAGCAGCCATATTGTTTATGCATACTGCATGA
GTATTACCAAGAAAATCTTCAGAGTTGTAAAGTGACATGCTGTACAGGACCTCTTCGTGTTAAA
TGTCTCTATGTACCTCTGCTGTGTCAGGGATCTTGTGCCTCAAAAAAAAAATGTCCCCAAGGTT
GTGTTTATACACGGTCTATATTTTTTTCAATCTCATAATGAACAGCATTATTATTTCCACTTTA
GAAGAACCAAAAGAAGGTATCTTCTTTTAAAAACATTTTTTTTAAAGAATGAATTTATGGAAAA
TCCAGTAGTGCTTATACAGATGAATTATACTATTAGATGAGAAATTAGATGCTCTATTTTTATG
AAGATAAATGCTTAGATTAAAACAGACTTTAACTTTAATTCTCAAACGTACATAGTTCCCTTTC
ACATCAGCCAGTCACTTGAACTGTTTTTTTTTTCTTTTTTTCCGCTTTCAAGAAATCTCTGGTG
TTATTCAAATTTTTTTTTCACTACCAGTATAATTTAATGCCCCCCCCCCCCCCCGTCCCCAGTG
GAGCTGGGAATTGAATCTAGGGCCTGTAGACTTACCTTAAAATCATTATTGTATGTGTGGATGC
TGTGACTTCTGAACTAGGTCTCACAGCCTAACGCCAGGTCTGCTCATCCTCCTCACTTGGGTGA
GGCTTTTGACAACCAAAGAACAACAAAGCCCAAACAGTGTTCTGAAAATTATCAATTCTAAAGA
TTCTTGAAAAATAGCTTGTATTCTCATGTAAGATCTTATCTCCCATATTTAAACAAATTGAAAA
CATCGCCTATCTGTCAAGTGAACCCTCCCAAAGAGCAAAGAGTGAGAGAATTCTGAATGTGGGG
AAGTTTGTCCCCTTGTCTGACGTGAGAGCTTAGCTTGCAGTTGTCCTTGTCTGTCACAGTTTTA
ATGCTGATGGCCACAAGCCAAAGTAATTAGATCCTTACACCGGAGAAGACAGACACCCTATCTG
TTGTGACAGCAGTCTTTCCAGGTTCTTCTTAGACGTGCTTCTAAAATACTTACCTCCCAACTTT
TTTGGTTACTCAAAGTAGTGGGGGGGGGGGGAATCACAACCTGTGGAAATGAAGATTTTTGTAT
GCTATCAGTTATTCTCTGTCTCTTGTGGCTAATGAGGTGTTTAATTCGACGGAATGACAGTAAA
GTGTAATGTTAATGTTAAGGCTGGTGAGACAGGACTCTGGGTGTGTGGTGAGCCCAGCCCTGGT
CCCTCCTCCTGGTTCTGTGGAATGTGGTACCACGTGGATTCTTACTGGGGGAAACACACTTTAT
AAGGTGACAGGCTATCCACAGTCAGCACCTTTTGCATTGATATATAGTTCACAGCTTTAGGAAA
ATTCAGAACTGGTGAACTGCCTTACTCTCTTAGGGTAAGTCTGGCATTAACATGGCTGCGGGAG
TCGGATGTATTTCTGCTAAATCTTCATGCTGAATCTGCTGTGTCAGCTTGTGAGAACCGCCTTT
TCTAATTCAGACCTGGAATTATTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTGGAGC
TGAGGACTGAACCCAGGGCCTTGAGCTTGCTAGGCAAGAGCTCTACCACTGAGCTAAATCCTCA
ACCCCCTGGAATTATTTTCAGTAGTGAATAGTGATCTCTATATGTCACCACAAATGACAGTTTT
GCCCTGTTACCATAACCACAGTGAATCTCCTCCTTCTATATTAGCCCAAGCAGACAGTCTGATA
GAATCAAATGCACTTGGTGGCTTTGCACTGTCTGCCCACATCCGCTGCCTTGCCAACGGTGGTA
TTTAAACGTGGTTTTTGTTTGCTTTTGCCTGAACAAGTCAAATCGAGACAGTTGAAACTTACCT
GAGATTAGGAAGAATGTCCTCTGGTAACTTACCTGTCACTTGTCTTAGACTCGGAGCCAGTGTG
GCCACAGATGCTGGGAGGCCCTCGTGGCACTGGGGAAATGATCGATGCCTTTGAACTGAAGAAA
GAAAGCATGACTGACAGGCCGAAAGTTCCCACGTCCACTGTAACATTCTGTCTGATTTTTTAAT
GAAGATGTCATTTAATTATTTGCCAAAACTAGGGTTTTAATGAAGTGGCTTCCCCAGTCCCCTT
TTTATAGTTATTTTCTGGTGTAGACCCTTGAGGTGGCTCAGGGTATAAAGGTGCCTCTCCCAAG
CCTGACAACCTACGCTTGATCCCTGGGGTTCACACTGTAGAAGGAGAGGACTACCCTGGTACAT
TGTTCTCAGACTTCTGTATGTGTGCGGCTCGCGCTCACACACACACACACACACACACACACAC
GCGCGCGCGCAAGGCAAATTAAAAGGTATATAAAAGTTAAATTTCTGTTTTATAAAACGGTGTT
TAATAAGAAAATATTTATAAAATTTAAGTACAAAATTATCTATTAAAAATTCCTATTCCTGCCA
GTCAATGGTGGAGTTTGCCTTTAATCCAAGCTCTCTGGAAGCAAGGCAGGTTCTCTGAATTGGA
GGCCAGCCTGGCCTGTGGAGTGAGTTCCAAGACAGCTGGGGCGACACAGAGAAACTGTCTCAAA
AACAAAACCAAATCAAAACAAAAACTGCTATTCCAGTTGATACTGATAACCATTGTAAAAGAGA
GCAGAAATATCATCAATACAATATCGTCCCTTTGGGACTCCCTGGGGGGGAAGCAGATTGTATT
TGTGTCATTGTATCTGCCCTGTTTCTTTATAAATAACACTCTAGATTTCTTGCCTTGGGTTTGC
AGAGTTGTTGAGAAGCAAACTGTCGCCGTGTTTTTTGGAAGGTGGAAGTGTACTTAAGATTATT
TATTATGAAATGGAGTACTTCTATGTAAGTGCGTTGATGTAAACGCTAGTGATTTCTCGCTTTT
TTTTTTTGTCTTGTTTTGCTTCTCATGGAAATGTTTGTACTTTTTTTATCATTGTCTTTTATGA
AATACAATGTTCTAAAGAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097085 ⟹ XP_038953013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	12,233,350 - 12,286,917 (-)	NCBI
mRatBN7.2	18	11,958,382 - 12,011,917 (-)	NCBI

RefSeq Acc Id:

XM_039097087 ⟹ XP_038953015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	12,233,350 - 12,281,738 (-)	NCBI
mRatBN7.2	18	11,958,382 - 12,006,770 (-)	NCBI

RefSeq Acc Id:

XM_039097088 ⟹ XP_038953016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	12,233,350 - 12,274,703 (-)	NCBI
mRatBN7.2	18	11,958,382 - 11,999,744 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_113928	(Get FASTA)	NCBI Sequence Viewer
	XP_038953013	(Get FASTA)	NCBI Sequence Viewer
	XP_038953015	(Get FASTA)	NCBI Sequence Viewer
	XP_038953016	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC24515	(Get FASTA)	NCBI Sequence Viewer
	EDL76096	(Get FASTA)	NCBI Sequence Viewer
	EDL76097	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021764
	ENSRNOP00000082568
	ENSRNOP00000082568.1
GenBank Protein	O88419	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113928 ⟸ NM_031740

- UniProtKB:

O88419 (UniProtKB/Swiss-Prot), A6J2G4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSALKRMMRVSNRSLIAFIFFFSLSTSCLYFIYVAPGIANTYLFMVQARGIMLRENVKTIGHMI
RLYTNKNTTLNGTDYPEGNNTSDYLVQTTTYLPQNFTYSPHLPCPEKLPYMRGFLSVNVSEISF
DEVHQLFSKDSEIEPGGHWRPQDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY
VIEQTGTQPFNRAMLFNVGFKEAMKDRAWDCVIFHDVDHLPENDRNYYGCGEMPRHFAAKLDKY
MYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVHYSGYNVTRPEGDLGKYTS
IPHHHRGEVQFLGRYKLLRYSKERQFIDGLNNLLYTPKILVDRLYTNISVNLMPELAPVEDY

hide sequence

Ensembl Acc Id:

ENSRNOP00000021764 ⟸ ENSRNOT00000021764

Ensembl Acc Id:

ENSRNOP00000075106 ⟸ ENSRNOT00000091557

Ensembl Acc Id:

ENSRNOP00000068803 ⟸ ENSRNOT00000091696

RefSeq Acc Id:	XP_038953013 ⟸ XM_039097085
- Peptide Label:	isoform X1
- UniProtKB:	A0A0A0MXX9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953015 ⟸ XM_039097087
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038953016 ⟸ XM_039097088
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000082568 ⟸ ENSRNOT00000111678

Ensembl Acc Id:

ENSRNOP00000104176 ⟸ ENSRNOT00000138133

Protein Domains

Galactosyltransferase C-terminal Galactosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O88419-F1-model_v2	AlphaFold	O88419	1-382	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700655

Promoter ID:

EPDNEW_R11179

Type:

initiation region

Name:

B4galt6_1

Description:

beta-1,4-galactosyltransferase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	15,462,897 - 15,462,957	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:71046	AgrOrtholog
BioCyc Gene	G2FUF-8221	BioCyc
BioCyc Pathway	PWY-7836 [ganglio-series glycosphingolipids biosynthesis]	BioCyc
	PWY-7838 [globo-series glycosphingolipids biosynthesis]	BioCyc
	PWY-7839 [lacto-series glycosphingolipids biosynthesis]	BioCyc
	PWY-7841 [neolacto-series glycosphingolipids biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-7836	BioCyc
	PWY-7838	BioCyc
	PWY-7839	BioCyc
	PWY-7841	BioCyc
Ensembl Genes	ENSRNOG00000015895	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021764	ENTREZGENE
	ENSRNOT00000111678	ENTREZGENE
	ENSRNOT00000111678.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot
InterPro	Galactosyl_T	UniProtKB/Swiss-Prot
	Galactosyl_T_C	UniProtKB/Swiss-Prot
	Galactosyl_T_N	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
KEGG Report	rno:65196	UniProtKB/Swiss-Prot
NCBI Gene	65196	ENTREZGENE
PANTHER	BETA-1,4-GALACTOSYLTRANSFERASE 6	UniProtKB/Swiss-Prot
	PTHR19300	UniProtKB/Swiss-Prot
Pfam	Glyco_transf_7C	UniProtKB/Swiss-Prot
	Glyco_transf_7N	UniProtKB/Swiss-Prot
PhenoGen	B4galt6	PhenoGen
PRINTS	B14GALTRFASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015895	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniProt	A0A0A0MXX9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LMH1_RAT	UniProtKB/TrEMBL
	A6J2G4	ENTREZGENE, UniProtKB/TrEMBL
	B4GT6_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	B4galt6	beta-1,4-galactosyltransferase 6	B4galt6	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-07-09	B4galt6	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	382 amino acids; 44.7 kDa	70807

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways