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Gene: B3gat1 (beta-1,3-glucuronyltransferase 1) Rattus norvegicus

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Symbol:

B3gat1

Name:

beta-1,3-glucuronyltransferase 1

RGD ID:

70880

Description:

Enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Involved in cellular response to hypoxia. Located in Golgi membrane and endoplasmic reticulum membrane. Is active in Golgi apparatus. Biomarker of pulmonary fibrosis. Orthologous to human B3GAT1 (beta-1,3-glucuronyltransferase 1); PARTICIPATES IN chondroitin sulfate biosynthetic pathway; heparan sulfate biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P); galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1; glcAT-P; glcUAT-P; glucuronosyltransferase P; glucuronosyltransferase-P; Hnk-1; UDP-GlcUA:glycoprotein beta-1,3-glucuronyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CEACAM19 (CEA cell adhesion molecule 19)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	B3GAT1 (beta-1,3-glucuronyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	B3gat1 (beta-1,3-glucuronyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	b3gat1a (beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	b3gat1b (beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	GlcAT-I	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	GlcAT-I	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	glct-1	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	glct-2	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	glct-3	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	glct-4	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	glct-5	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	sqv-8	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sqv-8	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	GlcAT-S	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glct-6	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	abhd13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b3gat1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b3gat1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,362,791 - 33,390,446 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	33,363,048 - 33,390,443 (+)	Ensembl				GRCr8
mRatBN7.2	8	25,087,123 - 25,114,692 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,087,547 - 25,113,395 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	29,146,110 - 29,171,952 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,440,400 - 27,466,244 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,303,823 - 25,329,667 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,777,024 - 27,804,368 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,777,179 - 27,804,515 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	27,797,210 - 27,824,527 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	26,333,218 - 26,359,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	26,644,562 - 26,670,406 (+)	NCBI		Celera
RGSC_v3.1	8	26,333,217 - 26,359,068 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Familial Prostate Cancer (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

pulmonary fibrosis (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromodichloromethane (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

CGP 52608 (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper atom (EXP)

copper(0) (EXP)

deguelin (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

mercury dichloride (EXP)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

nickel sulfate (ISO)

paracetamol (ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (EXP,ISO)

zinc(0) (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IBA)

cellular response to hypoxia (IEP)

chondroitin sulfate proteoglycan biosynthetic process (IBA)

glycosaminoglycan biosynthetic process (IEA,ISO)

Cellular Component

endoplasmic reticulum membrane (IDA,IEA)

extracellular region (IEA)

Golgi apparatus (IDA)

Golgi lumen (TAS)

Golgi membrane (IBA,IDA,IEA)

membrane (IEA)

Molecular Function

galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (IBA,IDA,IEA,ISO)

metal ion binding (IEA)

protein binding (IPI,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

chondroitin sulfate biosynthetic pathway (IEA)

heparan sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Hypoxic regulation of β-1,3-glucuronyltransferase 1 expression in nucleus pulposus cells of the rat intervertebral disc: role of hypoxia-inducible factor proteins.	Gogate SS, etal., Arthritis Rheum. 2011 Jul;63(7):1950-60. doi: 10.1002/art.30342.
3.	Physical and functional association of glucuronyltransferases and sulfotransferase involved in HNK-1 biosynthesis.	Kizuka Y, etal., J Biol Chem. 2006 May 12;281(19):13644-13651. doi: 10.1074/jbc.M601453200. Epub 2006 Mar 16.
4.	Distinct transport and intracellular activities of two GlcAT-P isoforms.	Kizuka Y, etal., J Biol Chem. 2009 Apr 3;284(14):9247-56. doi: 10.1074/jbc.M807517200. Epub 2009 Jan 30.
5.	Gene Data Set	MGD Curation, June 12, 2002
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Purification and characterization of a glucuronyltransferase involved in the biosynthesis of the HNK-1 epitope on glycoproteins from rat brain.	Terayama K, etal., J Biol Chem 1998 Nov 13;273(46):30295-300.
12.	Cloning and functional expression of a novel glucuronyltransferase involved in the biosynthesis of the carbohydrate epitope HNK-1.	Terayama K, etal., Proc Natl Acad Sci U S A 1997 Jun 10;94(12):6093-8.
13.	Glycosyltransferases and glycosaminoglycans in bleomycin and transforming growth factor-β1-induced pulmonary fibrosis.	Venkatesan N, etal., Am J Respir Cell Mol Biol. 2014 Mar;50(3):583-94. doi: 10.1165/rcmb.2012-0226OC.

Additional References at PubMed

PMID:11784317	PMID:15232286	PMID:18582544	PMID:19147493	PMID:19961337	PMID:21056957	PMID:26253417

Genomics

Comparative Map Data

B3gat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,362,791 - 33,390,446 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	33,363,048 - 33,390,443 (+)	Ensembl				GRCr8
mRatBN7.2	8	25,087,123 - 25,114,692 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,087,547 - 25,113,395 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	29,146,110 - 29,171,952 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,440,400 - 27,466,244 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,303,823 - 25,329,667 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,777,024 - 27,804,368 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,777,179 - 27,804,515 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	27,797,210 - 27,824,527 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	26,333,218 - 26,359,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	26,644,562 - 26,670,406 (+)	NCBI		Celera
RGSC_v3.1	8	26,333,217 - 26,359,068 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

B3GAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	134,378,504 - 134,412,242 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	134,378,504 - 134,412,242 (-)	Ensembl			hg38	GRCh38
GRCh37	11	134,248,398 - 134,282,136 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	133,753,608 - 133,787,022 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	133,753,611 - 133,787,022	NCBI
Celera	11	131,420,912 - 131,454,041 (-)	NCBI		Celera
Cytogenetic Map	11	q25	NCBI
HuRef	11	130,203,109 - 130,236,321 (-)	NCBI		HuRef
CHM1_1	11	134,134,911 - 134,168,321 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	134,420,117 - 134,453,959 (-)	NCBI		T2T-CHM13v2.0

B3gat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	26,644,813 - 26,672,646 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	26,645,024 - 26,674,397 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	26,733,723 - 26,761,350 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	26,733,728 - 26,763,101 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	26,559,147 - 26,568,923 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	26,501,008 - 26,510,784 (+)	NCBI		MGSCv36	mm8
Celera	9	24,010,859 - 24,020,636 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	11.49	NCBI

B3gat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	35,294,434 - 35,321,851 (-)	Ensembl
ChiLan1.0	NW_004955412	35,294,434 - 35,321,873 (-)	NCBI	ChiLan1.0	ChiLan1.0

B3GAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	135,072,492 - 135,141,911 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	136,171,633 - 136,241,586 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	129,200,676 - 129,269,650 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	133,089,603 - 133,122,193 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	133,089,603 - 133,117,492 (-)	Ensembl			panPan2	panpan1.1

B3GAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	741,231 - 747,641 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	745,747 - 748,899 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	861,708 - 867,969 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	680,876 - 705,749 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	680,369 - 705,737 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	729,362 - 735,960 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	730,371 - 736,612 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	768,203 - 774,462 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

B3gat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	116,327,472 - 116,350,052 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936684	1,265,502 - 1,273,953 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936684	1,252,874 - 1,275,469 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B3GAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	60,995,277 - 61,020,103 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	60,995,280 - 61,020,300 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	67,615,955 - 67,640,910 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B3GAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	125,449,162 - 125,490,208 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	125,448,500 - 125,490,192 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	557,959 - 591,966 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B3gat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624812	9,013,354 - 9,039,966 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624812	9,013,676 - 9,039,935 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

B3gat1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	22,514,156 - 22,523,584 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in B3gat1
145 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	304
Count of miRNA genes:	182
Interacting mature miRNAs:	215
Transcripts:	ENSRNOT00000009825
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	11	64	150	49	43	26	14	26	5	228	98	3	139	81	76	17	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_054003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D88035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009825 ⟹ ENSRNOP00000009825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,363,048 - 33,390,443 (+)	Ensembl
mRatBN7.2 Ensembl	8	25,087,547 - 25,113,395 (+)	Ensembl
Rnor_6.0 Ensembl	8	27,777,179 - 27,804,515 (+)	Ensembl

RefSeq Acc Id:

NM_054003 ⟹ NP_446455

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,363,305 - 33,389,149 (+)	NCBI
mRatBN7.2	8	25,087,547 - 25,113,395 (+)	NCBI
Rnor_6.0	8	27,777,227 - 27,803,071 (+)	NCBI
Rnor_5.0	8	27,797,210 - 27,824,527 (+)	NCBI
RGSC_v3.4	8	26,333,218 - 26,359,068 (+)	RGD
Celera	8	26,644,562 - 26,670,406 (+)	RGD

Sequence:

show sequence

GCGCGCGCATCGCAGGGCAGCAGCCCTGGGTCTCTGGGGCCAGGGCATAGGACTGCCACCCGCT
ATGGACCGCGCCAGGGACGATATGGACTCGCTGCCGCAGGTATCAACCTCCGAAGGTTCCTGAC
CCTGCGCTGGACTACTTCCCCTTCGCAGACTCCCATCAGGCCGGACTCTGCAAACCTGCTGCCA
CAATGGGTAATGAGGAGCTGTGGGCGCAGCCAGCCTTGGAGATGCCGAAGAGAAGGGACATCCT
CGCGATTGTCCTCATTGTGCTTCCCTGGACACTGCTCATCACCGTCTGGCACCAGAGCAGCCTC
GCACCTCTGCTTGCTGTGCACAAGGATGAGGGAAGTGACCCCCGCCATGAGGCACCACCCGGTG
CGGACCCTAGGGAGTACTGCATGTCCGACCGTGACATCGTGGAGGTGGTGCGCACAGAGTACGT
GTACACGAGGCCGCCACCGTGGTCCGACACGCTGCCCACCATCCATGTGGTGACGCCCACCTAC
AGTAGACCGGTGCAGAAGGCAGAGCTGACGCGAATGGCCAACACGCTATTGCATGTGCCCAACC
TTCACTGGCTGGTGGTGGAGGATGCTCCACGTAGGACGCCCCTCACAGCGCGCCTGCTGCGCGA
CACTGGCCTCAACTATACACACCTGCACGTAGAGACACCACGCAACTACAAGCTGCGAGGTGAC
GCCCGAGACCCTCGCATCCCACGTGGCACCATGCAGCGCAATCTGGCCCTGCGCTGGTTGCGGG
AGACCTTCCCACGGAACTCCACTCAGCCGGGTGTAGTGTACTTCGCAGATGACGACAACACGTA
CAGTCTGGAGCTCTTTGAAGAGATGCGCAGCACAAGAAGGGTGTCCGTGTGGCCTGTGGCCTTT
GTTGGCGGCCTTCGGTATGAGGCCCCCCGGGTGAATGGGGCAGGGAAAGTGGTTGGCTGGAAGA
CAGTCTTCGACCCCCACCGGCCATTTGCAATAGACATGGCTGGATTTGCTGTCAACCTCCGGCT
CATCTTGCAACGAAGCCAGGCCTACTTTAAGCTACGTGGGGTAAAAGGAGGCTACCAGGAAAGC
AGTCTCCTTCGAGAACTTGTCACCCTCAATGATCTAGAGCCCAAGGCAGCAAACTGTACCAAGA
TCCTGGTCTGGCATACGCGAACAGAGAAGCCAGTGCTGGTGAATGAGGGGAAGAAGGGCTTCAC
TGACCCCTCGGTGGAGATCTGAAACTACACATGCAGGAATCACCTTCTCAGACCCTGATCTTGG
CTTCCATCCTCTCCCATGACTGACAGTGACTCTGAGGCAGACTCCTGAGGAATACCTATTATGT
ATACTGAAGGCTTCCAAGAGAGCCCAGCTTGACGCCAGGACAAAAGACAGAGAATTTAAGCACA
GAATCCCAGACCTGTGGTTCTCTACATCAACAAGGCCAGGGGCTTGAAAGACCCAAGTTCTGGG
GATTCCCGTTGCCAGCAAAGCCTGTGCTCAGCACACCTCCTTGGAAGCTTCCTGCATTGATGGG
GCTGTGTAAGCAAGGGGACCCTGCCTTCGAGTGATGCTGGGGTGAGGGAGGTCAGAAAACGCCA
CTATTGAGTGCAGCATGGCTGTCCATGGCTCCCTGCTCTTGGGCCCAGCATGACTACACAGCAT
GTGCCCAGCCAGGACATCCTGAAGACCAGAGAGCAGCCTGGGGCATGAAGATGCCCCAACACTT
GTCTTTCACACCTGCTCTTCCTCAGAGCTGCTCCCAAATCAGAAATACCTCTGGCTCTCCTCTG
GTTCGTGTTTACAGGGCATAAGGCTGTCTTGGATCCCACCTGGCACCCAGCCCTGCATTGGGGG
AGCCTGGGCCTACCTACAGCTCCCCTTGTACCTCAGGCTGTAGAAGAACCAAGCCCTTCCCCGT
GTCCTTCAAGCCTCCTGTGCCAGAATCAGTCAGGTGGTGGGCCTAGAGCCAGCACAGGTCATGG
ATTGACCTGGATTGAGAACCAAGTCACCCCACAGTCCACACTGCCTCTCCAATACCCCTGGGCT
GCAATGCCCCTTGCTGGGTTTGGACTGGGGAGGCAATTGCCC

hide sequence

RefSeq Acc Id:

XM_006242734 ⟹ XP_006242796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,363,273 - 33,390,446 (+)	NCBI
mRatBN7.2	8	25,087,506 - 25,114,692 (+)	NCBI
Rnor_6.0	8	27,777,190 - 27,804,368 (+)	NCBI
Rnor_5.0	8	27,797,210 - 27,824,527 (+)	NCBI

Sequence:

show sequence

CCGAGGGTACGGAATCGGAGAACACCCGGAGAGAGAAGCGCGCGCATCGCAGGGCAGCAGCCCT
GGGTCTCTGGGGCCAGGGCATAGGACTGCCACCCGCTATGGACCGCGCCAGGGACGATATGGAC
TCGCTGCCGCAGGTATCAACCTCCGAAGGTTCCTGACCCTGCGCTGGACTACTTCCCCTTCGCA
GACTCCCATCAGGCCGGACTCTGCAAACCTGCTGCCACAATGGGTGGGTGTGAGCGCTGGTAAT
GAGGAGCTGTGGGCGCAGCCAGCCTTGGAGATGCCGAAGAGAAGGGACATCCTCGCGATTGTCC
TCATTGTGCTTCCCTGGACACTGCTCATCACCGTCTGGCACCAGAGCAGCCTCGCACCTCTGCT
TGCTGTGCACAAGGATGAGGGAAGTGACCCCCGCCATGAGGCACCACCCGGTGCGGACCCTAGG
GAGTACTGCATGTCCGACCGTGACATCGTGGAGGTGGTGCGCACAGAGTACGTGTACACGAGGC
CGCCACCGTGGTCCGACACGCTGCCCACCATCCATGTGGTGACGCCCACCTACAGTAGACCGGT
GCAGAAGGCAGAGCTGACGCGAATGGCCAACACGCTATTGCATGTGCCCAACCTTCACTGGCTG
GTGGTGGAGGATGCTCCACGTAGGACGCCCCTCACAGCGCGCCTGCTGCGCGACACTGGCCTCA
ACTATACACACCTGCACGTAGAGACACCACGCAACTACAAGCTGCGAGGTGACGCCCGAGACCC
TCGCATCCCACGTGGCACCATGCAGCGCAATCTGGCCCTGCGCTGGTTGCGGGAGACCTTCCCA
CGGAACTCCACTCAGCCGGGTGTAGTGTACTTCGCAGATGACGACAACACGTACAGTCTGGAGC
TCTTTGAAGAGATGCGCAGCACAAGAAGGGTGTCCGTGTGGCCTGTGGCCTTTGTTGGCGGCCT
TCGGTATGAGGCCCCCCGGGTGAATGGGGCAGGGAAAGTGGTTGGCTGGAAGACAGTCTTCGAC
CCCCACCGGCCATTTGCAATAGACATGGCTGGATTTGCTGTCAACCTCCGGCTCATCTTGCAAC
GAAGCCAGGCCTACTTTAAGCTACGTGGGGTAAAAGGAGGCTACCAGGAAAGCAGTCTCCTTCG
AGAACTTGTCACCCTCAATGATCTAGAGCCCAAGGCAGCAAACTGTACCAAGATCCTGGTCTGG
CATACGCGAACAGAGAAGCCAGTGCTGGTGAATGAGGGGAAGAAGGGCTTCACTGACCCCTCGG
TGGAGATCTGAAACTACACATGCAGGAATCACCTTCTCAGACCCTGATCTTGGCTTCCATCCTC
TCCCATGACTGACAGTGACTCTGAGGCAGACTCCTGAGGAATACCTATTATGTATACTGAAGGC
TTCCAAGAGAGCCCAGCTTGACGCCAGGACAAAAGACAGAGAATTTAAGCACAGAATCCCAGAC
CTGTGGTTCTCTACATCAACAAGGCCAGGGGCTTGAAAGACCCAAGTTCTGGGGATTCCCGTTG
CCAGCAAAGCCTGTGCTCAGCACACCTCCTTGGAAGCTTCCTGCATTGATGGGGCTGTGTAAGC
AAGGGGACCCTGCCTTCGAGTGATGCTGGGGTGAGGGAGGTCAGAAAACGCCACTATTGAGTGC
AGCATGGCTGTCCATGGCTCCCTGCTCTTGGGCCCAGCATGACTACACAGCATGTGCCCAGCCA
GGACATCCTGAAGACCAGAGAGCAGCCTGGGGCATGAAGATGCCCCAACACTTGTCTTTCACAC
CTGCTCTTCCTCAGAGCTGCTCCCAAATCAGAAATACCTCTGGCTCTCCTCTGGTTCGTGTTTA
CAGGGCATAAGGCTGTCTTGGATCCCACCTGGCACCCAGCCCTGCATTGGGGGAGCCTGGGCCT
ACCTACAGCTCCCCTTGTACCTCAGGCTGTAGAAGAACCAAGCCCTTCCCCGTGTCCTTCAAGC
CTCCTGTGCCAGAATCAGTCAGGTGGTGGGCCTAGAGCCAGCACAGGTCATGGATTGACCTGGA
TTGAGAACCAAGTCACCCCACAGTCCACACTGCCTCTCCAATACCCCTGGGCTGCAATGCCCCT
TGCTGGGTTTGGACTGGGGAGGCAATTGCCCTCTTCCTGGAACCCCTGAGAATCACAGATCTCA
GGACTGGAGGTAACAGTAATAAACAGGCAGAGCTCTTCCTGAAAAGTATGAGGCCCAGCAATCC
CAGCCCTTTTCTGAGCCAATCCTATGAAGGGTGCATTAGCAGGAGCTCAAGGTCAAGAGCAGGA
AATGTCTAAACACTGAAAGGAAGGGAGACCTGAGCACATACTGCTTTGGAAGTCACTCTATCTT
ACACAAAACGGGAAAGCTTGCAAAGCCAGCCCGCCTCATGCCCACTGCCCCTTCTCCGCCCCAG
ACAGTACGCTCACGCTGTTATACCTACCCACCTGCCCGAGAGAAGCATCTGCCTGGGTATTCAG
CAGCCCAGAGGCCCCTGGTTCTGGCTGCACGGGGCCCTCTGGTGGTAACCTCACTCCAGCTCCT
ACAAGTTGGAAGCACAATTTTCCTCCCAAGAGGGGAAAAGGAAAGGGCGCGCGCCCACTGAAGA
AGCATTTATTTTTTAACTGCTAACAGCTCCCCCGCTCCATTAAAACTCACAGGACGGGCCCGAG
AGTCATTCAGAATCCACTCTTGGGTGGATGAGACTCAGTCCACACAGCTAACTTTCAGAGAATA
GCATCAGCTGCCCATTTTGAAATGGATTTAACTTCCCACAGTCTTCAGGAAACGACCTGATGGT
ATAAGACCCCGCAGTCACCCTGTAGGACATCTCCCCCGAACCATTCATACTTCTGGATATTGGT
TTACCCATTGGCATCAAATGAGGAGCACAGGGAATCTATCCAGTGGATGAATAAGTCTGGGCAC
CTTACGCTCATTCATAGAAACTGTTCGTGGATGCCAAGGTCAAACGGGCTGCCGAGGCCACCTT
TTTAGCCAAACACAGTGCTCTTTTTAGGAAATCAAAAATGAAAAAAACAAAATGGGGATTTTTA
TTTTTCACTTTTTGGCAGATGCTACTTCAGTTGTTTTCACATAACGTCCCCTCTTAGCTGCATG
TGTATTTATTTAAAATTACAACCCCGGTGGACTGCGGCCTTCATCACGGTCGGGAATGAGCTTG
TTGCAAATCAGAACCGGGTCCATGATGACAACTGGCTCTCCAAACCCAGGCTGTCCCCTGCTCC
CTTGCTGGAAAGGCCTACCACAGAGGAGTTAAGCCAGAGGTCCAGGAGCTCCGTGGGCAGAGGC
TGGTGTGAGGGTGGAGCCCAAGCTGCTGCGCCATCTGGTCTGTTTTTATTTAACTGTATTTAAT
TTGTTTTCAAAAAAATTAAAAGTCAAATATGGTTTTTAACGGTTGTAA

hide sequence

RefSeq Acc Id:

XM_039080710 ⟹ XP_038936638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,362,882 - 33,390,446 (+)	NCBI
mRatBN7.2	8	25,087,123 - 25,114,692 (+)	NCBI

RefSeq Acc Id:

XM_039080713 ⟹ XP_038936641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,362,882 - 33,390,446 (+)	NCBI
mRatBN7.2	8	25,087,123 - 25,114,692 (+)	NCBI

RefSeq Acc Id:

XM_063264785 ⟹ XP_063120855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,362,791 - 33,390,446 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446455	(Get FASTA)	NCBI Sequence Viewer
	XP_006242796	(Get FASTA)	NCBI Sequence Viewer
	XP_038936638	(Get FASTA)	NCBI Sequence Viewer
	XP_038936641	(Get FASTA)	NCBI Sequence Viewer
	XP_063120855	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA20551	(Get FASTA)	NCBI Sequence Viewer
	EDL83351	(Get FASTA)	NCBI Sequence Viewer
	EDL83352	(Get FASTA)	NCBI Sequence Viewer
	EDL83353	(Get FASTA)	NCBI Sequence Viewer
	EDL83354	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009825
	ENSRNOP00000009825.5
GenBank Protein	O35789	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446455 ⟸ NM_054003

- UniProtKB:

O35789 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGNEELWAQPALEMPKRRDILAIVLIVLPWTLLITVWHQSSLAPLLAVHKDEGSDPRHEAPPGA
DPREYCMSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNL
HWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRE
TFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKT
VFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKI
LVWHTRTEKPVLVNEGKKGFTDPSVEI

hide sequence

RefSeq Acc Id:	XP_006242796 ⟸ XM_006242734
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHF1 (UniProtKB/Swiss-Prot), O35789 (UniProtKB/Swiss-Prot), A6JYC4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPKRRDILAIVLIVLPWTLLITVWHQSSLAPLLAVHKDEGSDPRHEAPPGADPREYCMSDRDIV EVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTP LTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVY FADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMA GFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLV NEGKKGFTDPSVEI hide sequence

Ensembl Acc Id:

ENSRNOP00000009825 ⟸ ENSRNOT00000009825

RefSeq Acc Id:	XP_038936638 ⟸ XM_039080710
- Peptide Label:	isoform X1
- UniProtKB:	O35789 (UniProtKB/Swiss-Prot), A0A0H2UHF1 (UniProtKB/Swiss-Prot), A6JYC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936641 ⟸ XM_039080713
- Peptide Label:	isoform X1
- UniProtKB:	O35789 (UniProtKB/Swiss-Prot), A0A0H2UHF1 (UniProtKB/Swiss-Prot), A6JYC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120855 ⟸ XM_063264785
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35789-F1-model_v2	AlphaFold	O35789	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:70880	AgrOrtholog
BioCyc Gene	G2FUF-31313	BioCyc
BioCyc Pathway	PWY-6557 [glycosaminoglycan-protein linkage region biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-6557	BioCyc
Ensembl Genes	ENSRNOG00000007142	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009825	ENTREZGENE
	ENSRNOT00000009825.6	UniProtKB/Swiss-Prot
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot
InterPro	Glyco_trans_43	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
KEGG Report	rno:117108	UniProtKB/Swiss-Prot
NCBI Gene	117108	ENTREZGENE
PANTHER	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PTHR10896	UniProtKB/Swiss-Prot
Pfam	Glyco_transf_43	UniProtKB/Swiss-Prot
PhenoGen	B3gat1	PhenoGen
RatGTEx	ENSRNOG00000007142	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHF1	ENTREZGENE
	A6JYC4	ENTREZGENE, UniProtKB/TrEMBL
	B3GA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A0A0H2UHF1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-16	B3gat1	beta-1,3-glucuronyltransferase 1	B3gat1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-07-09	B3gat1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	on cell adhesion molecules, including neural cell adhesion molecule, myelin-associated glycoprotein, L1, P0, and telencephalin	70805

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways